Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

74995095 .. 74995730

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG474300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTTGTCTTTCCCCCCAAGCTCACATTCCTCACCTGCTTTCCCTCTAAACAAAACATAGATCTCCCACTACTCCAAAAAATGAGAACCACCGTAATCGCTACTATTTCACCAACAAAACTACCTTCGACGGAAGCACCACCGAACATGGTTCCGCCGGTTTCACCTTGGCACTATCCGATTCCATACCTCTTAGGTGGCCTATTGATGATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGATTGCTCGTTTTGGAAGAGACACGGAGGAGGCAGCAATGCCAACAGAGATTTAGAGCCAGGTGGGGAGTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACCCTACTTACTTGGCCACCCCGATTCCAGTTTGCCTTACTAAAAGTACTAGTTTTGAAGAGGAATTAGAGAAGATAGAGGGAGATGATAAGGAAGAGAACTGTGAGAAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.64

Weight (kDa)

5.41

Isoelectric Point (pI)

61.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AciI	CCGC	1 cut(s)	155
AcoI	YGGCCR	2 cut(s)	354, 381
AfaI	GTAC	1 cut(s)	415
AgsI	TTSAA	1 cut(s)	425
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	259
AoxI	GGCC	3 cut(s)	199, 354, 381
ApeKI	GCWGC	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	25, 102, 156
BalI	TGGCCA	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	259
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	291
BshFI	GGCC	3 cut(s)	201, 356, 383
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	158, 357
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	201, 356, 383
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	61, 240
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	201, 356, 383
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	61, 240
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	94, 470
Bst6I	CTCTTC	3 cut(s)	257, 420, 456
BstDEI	CTNAG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	64, 243
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	61, 240
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	201, 356, 383
BveI	ACCTGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	22, 201, 215, 304, 356, 383
CviKI_1	RGCY	6 cut(s)	22, 201, 215, 304, 356, 383
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	2 cut(s)	63, 242
DpnII	GATC	2 cut(s)	61, 240
DraI	TTTAAA	1 cut(s)	331
EaeI	YGGCCR	2 cut(s)	354, 381
Eam1104I	CTCTTC	3 cut(s)	257, 420, 456
EarI	CTCTTC	3 cut(s)	257, 420, 456
EciI	GGCGGA	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	151
FaiI	YATR	4 cut(s)	59, 149, 187, 350
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	280
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	201, 356, 383
HapII	CCGG	2 cut(s)	158, 357
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	3 cut(s)	181, 314, 391
HpaII	CCGG	2 cut(s)	158, 357
HphI	GGTGA	3 cut(s)	25, 102, 156
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	135, 316
HpyCH4III	ACNGT	2 cut(s)	94, 470
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	61, 240
LpnPI	CCDG	6 cut(s)	49, 171, 291, 318, 370, 408
Lsp1109I	GCAGC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	417
MalI	GATC	2 cut(s)	63, 242
MboI	GATC	2 cut(s)	61, 240
MboII	GAAGA	4 cut(s)	274, 437, 451, 473
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	1 cut(s)	431
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	41, 55, 200, 266, 269, 421, 439
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	2 cut(s)	158, 357
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
NdeII	GATC	2 cut(s)	61, 240
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	181, 391
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	153
PsrI	GAACNNNNNNTAC	2 cut(s)	359, 391
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	61, 240
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	9 cut(s)	24, 38, 127, 169, 192, 199, 310, 327, 342
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	94, 470
TaqI	TCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	431
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	181, 391
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	1 cut(s)	279
TspGWI	ACGGA	2 cut(s)	146, 285
XspI	CTAG	1 cut(s)	417
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.