Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008129

Physical Location & Seq

Genomic Coordinates Reverse (-)

72805699 .. 72806100

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGAACCACCGTAATCGCTACTATTTCACCAACAAAACTACCTTCGACGGAAGCACCACCGAACATGGTTCCGCCGGTTTCACCTTGGCACTATCCGATTCCATACCTCTTAGGTGGCCTATTGATGATGGCTATTCTTGTTGTTTGTGCTCTCTTGATCTTGGATTGCTCGTTTTGGAAGAGACACGGAGGAGGCAGCAATGCCAACAGAGATTTAGAGCCAGGTGGGGAGTCTGTGAAGGTGTTTAAAGACAAGGTTTTGGTTATAATGGCCGGAAATGAGAACCCTACTTACTTGGCCACCCCGATTCCAGTTTGCCTTACTAAAAGTACTAGTTTTGAAGAGGAATTAGAGAAGATAGAGGGAGATGATAAGGAAGAGAACTGTGAGAAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006521 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0006868 GO:0008150 GO:0009987 GO:0010565 GO:0010585 GO:0015711 GO:0015804 GO:0015849 GO:0016020 GO:0016021 GO:0019222 GO:0031224 GO:0031323 GO:0032879 GO:0032890 GO:0032940 GO:0033238 GO:0034762 GO:0034765 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044070 GO:0044424 GO:0044425 GO:0044464 GO:0046717 GO:0046903 GO:0046942 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051179 GO:0051234 GO:0051952 GO:0051955 GO:0062012 GO:0065007 GO:0071702 GO:0071705 GO:0080090 GO:0080143 GO:1903789 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.54

Weight (kDa)

5.0

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008129)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37350
rosa_chinensis	RchiOBHm_Chr4g0410191 RchiOBHm_Chr5g0067181 RchiOBHm_Chr7g0208061
rosa_laevigata	RLG00000003257 RLG00000008449
rosa_multiflora	Rmu_co8475945.1_g000001 Rmu_sc0000365.1_g000018
rosa_roxburghii	Rroxscaffold_3G00250830 Rroxscaffold_5G00354970
rosa_rugosa	Rorug05G0382500 Rorug07G0101100
rosa_samantha	Rh4CG171300 Rh5AG442300 Rh5BG459200 Rh5CG481400 Rh5DG474300 Rh7AG234700 Rh7BG230700 Rh7CG250400 Rh7DG241200
rosa_wichuraiana	Rw4G013250 Rw5G041320 Rw7G020060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	2 cut(s)	273, 300
AfaI	GTAC	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	344
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	223
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	3 cut(s)	118, 273, 300
ApeKI	GCWGC	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	21, 75
BalI	TGGCCA	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	3 cut(s)	120, 275, 302
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	77, 276
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	120, 275, 302
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	120, 275, 302
BspLI	GGNNCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	13, 389
Bst6I	CTCTTC	3 cut(s)	176, 339, 375
BstDEI	CTNAG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	120, 275, 302
Cfr10I	RCCGGY	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	5 cut(s)	120, 134, 223, 275, 302
CviKI_1	RGCY	5 cut(s)	120, 134, 223, 275, 302
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DraI	TTTAAA	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	273, 300
Eam1104I	CTCTTC	3 cut(s)	176, 339, 375
EarI	CTCTTC	3 cut(s)	176, 339, 375
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	1 cut(s)	70
FaiI	YATR	3 cut(s)	68, 106, 269
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	120, 275, 302
HapII	CCGG	2 cut(s)	77, 276
Hin1II	CATG	1 cut(s)	70
HinfI	GANTC	3 cut(s)	100, 233, 310
HpaII	CCGG	2 cut(s)	77, 276
HphI	GGTGA	2 cut(s)	21, 75
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	54, 235
HpyCH4III	ACNGT	2 cut(s)	13, 389
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	5 cut(s)	90, 210, 237, 289, 327
Lsp1109I	GCAGC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	336
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	4 cut(s)	193, 356, 370, 392
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	119, 185, 188, 340, 358
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	2 cut(s)	77, 276
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	100, 310
PkrI	GCNGC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	72
PsrI	GAACNNNNNNTAC	2 cut(s)	278, 310
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	46, 88, 111, 118, 229, 246, 261
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	13, 389
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	350
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	100, 310
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseI	GCWGC	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	65, 204
XspI	CTAG	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.