FvH4_3g39310

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
33461880 .. 33466228
4349 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39310.t4

Sequence Viewer

Length: 2040 bp
ATGAATGGACTGTGGAGATTTGATCGGTTTGTGGTGTTTGTGTTGATACTGTTTCAGTATAATCTGAGCTTCTGTTGGTGTCTCAACAGTGAAGGTTTGGCTTTGTTGAGGTTTAGGGAGAGAGTGGTTAGAGACCCTTATGGGGTTTTGAGGAATTGGAATGGTGGAGAAGATGATGGTCCTTGTTCTTGGTTTGGGGTTGAGTGCTCATCAGATGGGAAAGTCATCAGCTTGAATTTGAAAGATCTTTGTCTTGGAGGAACATTGGCCCCTGAACTAGGGAAGCTGGCTTACATAAAATCTATTATTCTGCGCAATAATTCTTTTTCTGGGAAAATTCCTAAAGAGTTTGGAGACTTAATGGAGCTGGAGGTTTTGGACTTGGGATACAATAACTTTAGTGGAACCTTGCCATCTGATTTCAGCAACCATCTGTCCCTCACTACCCTTTTACTTGATAATAACCAATTTCTTGGTTGTTTATCTCCTGAAGTCCATGAGCTTAAGATGGTTTCTGAATGTCAAACAGATGAGAGCCAACTAACAGATCCTGCTTTCGGGACATCATGCATGAGCAGATCTATCAGCTGGAACACTGTTCAATCTGGAGATGCAGCTCACCGGAGGTTGCAAGAGGTGGTAGATGAACCCGAGCCATCAAAAAATGGAAAAGCTAAAGCAACTGGCAGGGCTTCACCTTCCATATCTGTTTCACCATCTTTATCACCATTTTCAGCTGCAATGCCACCATCTGATTCACCATCTTCAAATTCCCCTTCACCATCCCCATCATCAGATTCTCCTTCACCATCTCCCTCAAGCAGCTTTCTGACCCCTTCACCCTCTCCAGTCCCAGCAAATCCACCAATTATTATTTCGACACCACCAGAGTCTAGTACATCAAAAGCTCCATCCCCTGCTTCAGTTCCAGCGCAAGGGGTTAAAAATAGTTCCAAGTCAAAGAGTCGCGTAGTTCTGATCTGTGCAGTTGTAGTTGGAGGGTCTATATTCATTTTACTTTCAGTCATTGGCATTATGCTTTTCCGGAGCAGTAAAGTTGTTACAGTAAGACCGTGGGCAACAGGGTTGAGTGGGCAGTTGCAGAAAGCATTTGTAACAGGTGTACCAAAGCTAAACCGATCAGAACTTGTGGCTGCTTGTGAAGATTTCAGTAATATAATTGGATGCTTTTCAGATGGTAACATATATAAGGGAACTCTTTCAAGTGGGGTTGAAATAGCTGTAACATGCATTACATCAACCTCTGCTGGAGACTGGTCTAAACATCTGGAGGCTCAGTTCAGAAAGAAGATAGAAACATTATCCAAGGTGAACCATAAGAATTTTGTAAACCTTATTGGGTATTGTGAAGAAGAGAAACCATTCACAAGAATGATGGTTTTTGAATATGCTCCAAATGGAACACTCTTTGAGCATCTACATATAAAAGAAGCGGAACACTTGGACTGGGGTATGAGAGTACGAGTAGCCATGGGTATGGCATACTGTCTAGAGTATATGCACCAAATGACTCCACCAATATTCCAGAAGAACTTGCAATCAGCTTCTATATACCTGACCGAAGACTATGCAGCCAAAATATCAGATTTCAGCTTCTGGAATGAAGGAACTGCAGCAAAGAAGAGATCAGCTGACAAAGAGCTTATGGAAATCCCACCTGCTAGTCCAGAAAGTGATGTGTACAGCTTTGGGGTAGTATTGTTTGAAATGTTCACTGGTAGAATTCCATACTCTGTGGAAGAGGGTTCTCTTGTGGACTGGGCATCACACTATCTCAGAGGGGAGAAACCCTTGGCAGAAATGGTGGATCCTATTTTAGAAACTTACCAAGAAGAAGAACTAGGAAAACTGTTTCAAGTGATATCAGATTGTGTCCATCCTGACCCGAAACAAAGACCAAAGATGACAGAGATCACAGCCAGGTTAAAAGAAATCACAGCCATGGAACCGGATCGAGCAACACCAAAGTTATCACCTCTTTGGTGGGCAGAACTTGAAATTCTTTCTGAAGGAAACTGA

Protein Analysis

680

Amino Acids

74.68

Weight (kDa)

5.34

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 10 - 47 1.4e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 76 - 134 6.7e-06 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 370 - 626 6.1e-28 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 371 - 623 2.4e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1687
Acc16I TGCGCA 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 1687
AccII CGCG 1 cut(s) 969
AccIII TCCGGA 1 cut(s) 1044
AciI CCGC 1 cut(s) 1454
AclWI GGATC 4 cut(s) 542, 1823, 1836, 1980
AcsI RAATTY 6 cut(s) 235, 336, 769, 1342, 1743, 2019
AcuI CTGAAG 2 cut(s) 510, 906
AfaI GTAC 4 cut(s) 898, 1125, 1482, 1703
AfiI CCNNNNNNNGG 4 cut(s) 142, 278, 557, 935
AflII CTTAAG 1 cut(s) 503
AjnI CCWGG 1 cut(s) 1940
AjuI GAANNNNNNNTTGG 2 cut(s) 859, 891
AloI GAACNNNNNNTCC 2 cut(s) 1283, 1315
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 4 cut(s) 86, 126, 348, 1266
AlwI GGATC 4 cut(s) 542, 1823, 1836, 1980
AlwNI CAGNNNCTG 2 cut(s) 551, 1617
Ama87I CYCGRG 1 cut(s) 650
Aor13HI TCCGGA 1 cut(s) 1044
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 6 cut(s) 614, 737, 822, 1154, 1592, 1634
ApoI RAATTY 6 cut(s) 235, 336, 769, 1342, 1743, 2019
Asp700I GAANNNNTTC 2 cut(s) 1219, 1382
AspLEI GCGC 2 cut(s) 315, 934
AspS9I GGNCC 2 cut(s) 179, 268
AvaI CYCGRG 1 cut(s) 650
AvaII GGWCC 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 1107, 1140
BamHI GGATCC 1 cut(s) 1828
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 1 cut(s) 1590
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 6 cut(s) 626, 724, 834, 1141, 1604, 1646
BcgI CGANNNNNNTGC 2 cut(s) 1571, 1605
BciT130I CCWGG 1 cut(s) 1942
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 4 cut(s) 86, 126, 348, 1266
BfaI CTAG 5 cut(s) 278, 894, 1511, 1683, 1862
BfmI CTRYAG 1 cut(s) 1632
BfrI CTTAAG 1 cut(s) 503
BfuAI ACCTGC 1 cut(s) 1687
BfuI GTATCC 1 cut(s) 380
BglII AGATCT 2 cut(s) 244, 578
BisI GCNGC 6 cut(s) 615, 738, 823, 1155, 1593, 1635
BlsI GCNGC 6 cut(s) 616, 739, 824, 1156, 1594, 1636
Bme1390I CCNGG 1 cut(s) 1942
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 179, 268
BmiI GGNNCC 4 cut(s) 270, 406, 1830, 1968
BmrFI CCNGG 1 cut(s) 1942
BmrI ACTGGG 2 cut(s) 1477, 1789
BmsI GCATC 4 cut(s) 601, 1175, 1444, 1793
BmuI ACTGGG 2 cut(s) 1477, 1789
BpiI GAAGAC 1 cut(s) 1590
BpmI CTGGAG 5 cut(s) 389, 627, 831, 1290, 1310
BpuEI CTTGAG 1 cut(s) 802
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 1073, 1326, 1491, 1812, 1962
BsaWI WCCGGW 3 cut(s) 621, 1044, 1969
BsaXI ACNNNNNCTCC 2 cut(s) 1283, 1313
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 278, 557, 935
Bse1I ACTGG 6 cut(s) 688, 848, 1280, 1472, 1741, 1784
Bse3DI GCAATG 1 cut(s) 747
BseAI TCCGGA 1 cut(s) 1044
BseBI CCWGG 1 cut(s) 1942
BseDI CCNNGG 5 cut(s) 1073, 1326, 1491, 1812, 1962
BseGI GGATG 4 cut(s) 782, 911, 1190, 1897
BseLI CCNNNNNNNGG 4 cut(s) 142, 278, 557, 935
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 3 cut(s) 56, 1310, 1810
BseNI ACTGG 6 cut(s) 688, 848, 1280, 1472, 1741, 1784
BseXI GCAGC 6 cut(s) 626, 724, 834, 1141, 1604, 1646
BseYI CCCAGC 1 cut(s) 853
BsgI GTGCAG 1 cut(s) 1005
Bsh1236I CGCG 1 cut(s) 969
BshFI GGCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 3 cut(s) 622, 1045, 1970
BslFI GGGAC 3 cut(s) 421, 574, 836
BslI CCNNNNNNNGG 4 cut(s) 142, 278, 557, 935
BsmAI GTCTC 4 cut(s) 86, 126, 348, 1266
BsmFI GGGAC 3 cut(s) 421, 574, 836
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 1044
Bsp1407I TGTACA 1 cut(s) 1701
Bsp19I CCATGG 2 cut(s) 1491, 1962
BspACI CCGC 1 cut(s) 1454
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 3 cut(s) 57, 1309, 1809
BspEI TCCGGA 1 cut(s) 1044
BspFNI CGCG 1 cut(s) 969
BspLI GGNNCC 4 cut(s) 270, 406, 1830, 1968
BspMAI CTGCAG 1 cut(s) 1636
BspMI ACCTGC 1 cut(s) 1687
BspPI GGATC 4 cut(s) 542, 1823, 1836, 1980
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 1701
BsrI ACTGG 6 cut(s) 688, 848, 1280, 1472, 1741, 1784
BssECI CCNNGG 5 cut(s) 1073, 1326, 1491, 1812, 1962
BssT1I CCWWGG 4 cut(s) 1326, 1491, 1812, 1962
Bst2UI CCWGG 1 cut(s) 1942
Bst4CI ACNGT 8 cut(s) 12, 51, 89, 598, 1066, 1074, 1508, 1872
Bst6I CTCTTC 3 cut(s) 1368, 1637, 1755
BstAFI CTTAAG 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 1701
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 3 cut(s) 65, 1296, 1796
BstDSI CCRYGG 3 cut(s) 1073, 1491, 1962
BstENI CCTNNNNNAGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 782, 911, 1190, 1897
BstFNI CGCG 1 cut(s) 969
BstHHI GCGC 2 cut(s) 315, 934
BstMAI GTCTC 4 cut(s) 86, 126, 348, 1266
BstNI CCWGG 1 cut(s) 1942
BstNSI RCATGY 1 cut(s) 1251
BstSCI CCNGG 1 cut(s) 1940
BstSFI CTRYAG 1 cut(s) 1632
BstUI CGCG 1 cut(s) 969
BstV1I GCAGC 6 cut(s) 626, 724, 834, 1141, 1604, 1646
BstV2I GAAGAC 1 cut(s) 1590
BstX2I RGATCY 4 cut(s) 244, 547, 578, 1828
BstXI CCANNNNNNTGG 2 cut(s) 473, 1498
BstYI RGATCY 4 cut(s) 244, 547, 578, 1828
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 3 cut(s) 1073, 1491, 1962
BtsCI GGATG 4 cut(s) 782, 911, 1190, 1897
BtsIMutI CAGTG 3 cut(s) 94, 594, 1734
BveI ACCTGC 1 cut(s) 1687
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 2 cut(s) 551, 1617
CfoI GCGC 2 cut(s) 315, 934
Cfr13I GGNCC 2 cut(s) 179, 268
Csp6I GTAC 4 cut(s) 897, 1124, 1481, 1702
CviAII CATG 6 cut(s) 497, 567, 571, 1248, 1492, 1963
CviQI GTAC 4 cut(s) 897, 1124, 1481, 1702
DdeI CTNAG 3 cut(s) 65, 1296, 1796
Eam1104I CTCTTC 3 cut(s) 1368, 1637, 1755
EarI CTCTTC 3 cut(s) 1368, 1637, 1755
Eco130I CCWWGG 4 cut(s) 1326, 1491, 1812, 1962
Eco31I GGTCTC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 1884
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 2 cut(s) 510, 906
Eco88I CYCGRG 1 cut(s) 650
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 1743
EcoRII CCWGG 1 cut(s) 1940
EcoRV GATATC 1 cut(s) 1884
EcoT14I CCWWGG 4 cut(s) 1326, 1491, 1812, 1962
EcoT22I ATGCAT 2 cut(s) 572, 1253
ErhI CCWWGG 4 cut(s) 1326, 1491, 1812, 1962
FaeI CATG 6 cut(s) 500, 570, 574, 1251, 1495, 1966
FaqI GGGAC 3 cut(s) 421, 574, 836
FatI CATG 6 cut(s) 496, 566, 570, 1247, 1491, 1962
Fnu4HI GCNGC 6 cut(s) 615, 738, 823, 1155, 1593, 1635
FokI GGATG 4 cut(s) 769, 898, 1197, 1884
Fsp4HI GCNGC 6 cut(s) 615, 738, 823, 1155, 1593, 1635
FspBI CTAG 5 cut(s) 278, 894, 1511, 1683, 1862
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 2 cut(s) 314, 933
GluI GCNGC 6 cut(s) 615, 738, 823, 1155, 1593, 1635
GsaI CCCAGC 1 cut(s) 857
GsuI CTGGAG 5 cut(s) 389, 627, 831, 1290, 1310
HaeIII GGCC 1 cut(s) 269
HapII CCGG 3 cut(s) 622, 1045, 1970
HhaI GCGC 2 cut(s) 315, 934
Hin1II CATG 6 cut(s) 500, 570, 574, 1251, 1495, 1966
Hin6I GCGC 2 cut(s) 313, 932
HinP1I GCGC 2 cut(s) 313, 932
HinfI GANTC 5 cut(s) 755, 797, 890, 964, 1531
HpaII CCGG 3 cut(s) 622, 1045, 1970
Hpy166II GTNNAC 6 cut(s) 1124, 1333, 1351, 1702, 1734, 1777
Hpy8I GTNNAC 6 cut(s) 1124, 1333, 1351, 1702, 1734, 1777
HpyAV CCTTC 7 cut(s) 86, 708, 786, 813, 846, 1619, 2024
HpyCH4III ACNGT 8 cut(s) 12, 51, 89, 598, 1066, 1074, 1508, 1872
HpyF3I CTNAG 3 cut(s) 65, 1296, 1796
Hsp92II CATG 6 cut(s) 500, 570, 574, 1251, 1495, 1966
HspAI GCGC 2 cut(s) 313, 932
Kpn2I TCCGGA 1 cut(s) 1044
LmnI GCTCC 4 cut(s) 364, 913, 1047, 1417
Lsp1109I GCAGC 6 cut(s) 626, 724, 834, 1141, 1604, 1646
LweI GCATC 4 cut(s) 601, 1175, 1444, 1793
MaeI CTAG 5 cut(s) 278, 894, 1511, 1683, 1862
MaeIII GTNAC 4 cut(s) 1060, 1114, 1199, 1243
MflI RGATCY 4 cut(s) 244, 547, 578, 1828
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 3 cut(s) 899, 973, 1525
MmeI TCCRAC 1 cut(s) 976
Mph1103I ATGCAT 2 cut(s) 572, 1253
MroI TCCGGA 1 cut(s) 1044
MroXI GAANNNNTTC 2 cut(s) 1219, 1382
MseI TTAA 4 cut(s) 359, 504, 942, 1946
MslI CAYNNNNRTG 3 cut(s) 1391, 1496, 1961
MspA1I CMGCKG 3 cut(s) 588, 737, 1652
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 3 cut(s) 622, 1045, 1970
MspR9I CCNGG 1 cut(s) 1942
MvaI CCWGG 1 cut(s) 1942
MvnI CGCG 1 cut(s) 969
NcoI CCATGG 2 cut(s) 1491, 1962
NlaIII CATG 6 cut(s) 500, 570, 574, 1251, 1495, 1966
NlaIV GGNNCC 4 cut(s) 270, 406, 1830, 1968
NsbI TGCGCA 1 cut(s) 314
NsiI ATGCAT 2 cut(s) 572, 1253
NspI RCATGY 1 cut(s) 1251
PaqCI CACCTGC 1 cut(s) 1687
PdmI GAANNNNTTC 2 cut(s) 1219, 1382
PfeI GAWTC 2 cut(s) 755, 797
PkrI GCNGC 6 cut(s) 616, 739, 824, 1156, 1594, 1636
PleI GAGTC 3 cut(s) 898, 972, 1525
PpsI GAGTC 3 cut(s) 898, 972, 1525
Psp6I CCWGG 1 cut(s) 1940
PspFI CCCAGC 1 cut(s) 853
PspGI CCWGG 1 cut(s) 1940
PspN4I GGNNCC 4 cut(s) 270, 406, 1830, 1968
PspPI GGNCC 2 cut(s) 179, 268
PstI CTGCAG 1 cut(s) 1636
PstNI CAGNNNCTG 2 cut(s) 551, 1617
PsuI RGATCY 4 cut(s) 244, 547, 578, 1828
PvuII CAGCTG 3 cut(s) 588, 737, 1652
RsaI GTAC 4 cut(s) 898, 1125, 1482, 1703
RsaNI GTAC 4 cut(s) 897, 1124, 1481, 1702
RseI CAYNNNNRTG 3 cut(s) 1391, 1496, 1961
SaqAI TTAA 4 cut(s) 359, 504, 942, 1946
SatI GCNGC 6 cut(s) 615, 738, 823, 1155, 1593, 1635
Sau96I GGNCC 2 cut(s) 179, 268
SchI GAGTC 3 cut(s) 899, 973, 1525
ScrFI CCNGG 1 cut(s) 1942
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 4 cut(s) 601, 1175, 1444, 1793
SfcI CTRYAG 1 cut(s) 1632
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 3 cut(s) 1391, 1496, 1961
SmlI CTYRAG 2 cut(s) 503, 817
SmoI CTYRAG 2 cut(s) 503, 817
SsiI CCGC 1 cut(s) 1454
SspI AATATT 1 cut(s) 1542
SspMI CTAG 5 cut(s) 278, 894, 1511, 1683, 1862
StyD4I CCNGG 1 cut(s) 1940
StyI CCWWGG 4 cut(s) 1326, 1491, 1812, 1962
TaaI ACNGT 8 cut(s) 12, 51, 89, 598, 1066, 1074, 1508, 1872
TaqI TCGA 2 cut(s) 878, 1975
TaqII GACCGA 1 cut(s) 1595
TatI WGTACW 2 cut(s) 896, 1701
TfiI GAWTC 2 cut(s) 755, 797
Tru1I TTAA 4 cut(s) 359, 504, 942, 1946
Tru9I TTAA 4 cut(s) 359, 504, 942, 1946
TscAI CASTG 3 cut(s) 94, 601, 1741
TseI GCWGC 6 cut(s) 614, 737, 822, 1154, 1592, 1634
TspDTI ATGAA 4 cut(s) 17, 660, 1000, 1638
TspRI CASTG 3 cut(s) 94, 601, 1741
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 6 cut(s) 235, 336, 769, 1342, 1743, 2019
XbaI TCTAGA 1 cut(s) 1510
XceI RCATGY 1 cut(s) 1251
XmnI GAANNNNTTC 2 cut(s) 1219, 1382
XspI CTAG 5 cut(s) 278, 894, 1511, 1683, 1862
Zsp2I ATGCAT 2 cut(s) 572, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.