Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041274.1

Orthogroup ID

OG0005264

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1685

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041274.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 896 bp

atggtttccgaatgccaaacagatgagagccaactaacagatcctgctttcaggacatcatgcatgagcagatctatcagctggaacactgcccaacctggagatacagcttaccgcaggttgcagcaggtggtagatgagccggaggcatccagaattggaaaagctaaagcaactgacagggtttcatcatccatatcggcttcaccatctccatcaccattttcagcttcaatgccaccatctgcttcaccattttcatcatcaccatcttcaaattccccttcaccgtcaccatcatcagattctccttcaccatctccctcaagcagctttctgaccccttcaccctcgcctttgatagcaccaactccagcctctccagtcccagtaaatccaccaactattatttcgacaccaccagagtctagtccatcacaaactccatcccctgcttcaattccggggcaagggcttaaacatagttccaagtcaaagaggcgcatagttctgatttgtgcagccgttattggaggttctttattgattttactttcagtcattggcattatgcttgtccgaagcagtaaagtggttacagtaagaccctggacaacagggttaagtgggcagttgcagaaagcatttgtaacaggtgtaccaaaactcaaccgatcagaacttgtggctgcttgtgaagatttcagtaatataattggatgcttttcggatggtaacatttataagggaactctttcaagtggggttgaaatcgctgtaacatgtataacatcaacatctgctggagactggtctaaacatctggaggctcagttcagaaagaagatagaaacattatccaaggtgaaccacaagaactttgtaaacctaattgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

299

Amino Acids

31.27

Weight (kDa)

9.22

Isoelectric Point (pI)

86.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58540 AT5G58540 AT5G58540
fragaria_vesca	FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310
malus_domestica	MD03G1062400.v1.1 MD11G1066000.v1.1
prunus_persica	Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1
pyrus_communis	pycom03g05000 pycom11g05590
rosa_chinensis	RchiOBHm_Chr5g0070741
rosa_laevigata	RLG00000036155
rosa_multiflora	Rmu_sc0002944.1_g000040 Rmu_sc0036080.1_g000001 Rmu_sc0041274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010450
rosa_rugosa	Rorug05G0408300 Rorug05G0408400
rosa_samantha	Rh5AG463700 Rh5BG481600 Rh5CG505900 Rh5DG494100
rosa_wichuraiana	Rw5G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
AarI	CACCTGC	1 cut(s)	118
Acc36I	ACCTGC	2 cut(s)	108, 118
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	1 cut(s)	660
AfiI	CCNNNNNNNGG	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	782
AgsI	TTSAA	5 cut(s)	234, 276, 459, 759, 770
AjnI	CCWGG	2 cut(s)	97, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AloI	GAACNNNNNNTCC	2 cut(s)	818, 850
AluBI	AGCT	5 cut(s)	81, 110, 167, 230, 333
AluI	AGCT	5 cut(s)	81, 110, 167, 230, 333
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	44
ApeKI	GCWGC	4 cut(s)	124, 330, 521, 689
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	754
AspLEI	GCGC	1 cut(s)	504
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	9 cut(s)	198, 210, 243, 258, 279, 285, 306, 339, 877
BaeI	ACNNNNGTAYC	2 cut(s)	642, 675
BbvI	GCAGC	4 cut(s)	136, 342, 533, 676
BccI	CCATC	9 cut(s)	217, 223, 250, 277, 304, 325, 442, 454, 725
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	2 cut(s)	99, 610
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	1 cut(s)	429
BfuAI	ACCTGC	2 cut(s)	108, 118
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	4 cut(s)	125, 331, 522, 690
BlsI	GCNGC	4 cut(s)	126, 332, 523, 691
Bme1390I	CCNGG	3 cut(s)	99, 465, 610
BmrFI	CCNGG	3 cut(s)	99, 465, 610
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	158, 710
BmuI	ACTGGG	1 cut(s)	383
BpmI	CTGGAG	5 cut(s)	120, 357, 366, 825, 845
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	465
BsaJI	CCNNGG	3 cut(s)	464, 608, 861
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	3 cut(s)	383, 389, 815
BseBI	CCWGG	2 cut(s)	99, 610
BseDI	CCNNGG	3 cut(s)	464, 608, 861
BseGI	GGATG	5 cut(s)	149, 191, 446, 725, 736
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	845
BseNI	ACTGG	3 cut(s)	383, 389, 815
BseXI	GCAGC	4 cut(s)	136, 342, 533, 676
BsgI	GTGCAG	1 cut(s)	540
BsiSI	CCGG	2 cut(s)	143, 464
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	801
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	40, 71, 674
BspACI	CCGC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	844
BspMI	ACCTGC	2 cut(s)	108, 118
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	383, 389, 815
BssECI	CCNNGG	3 cut(s)	464, 608, 861
BssMI	GATC	3 cut(s)	40, 71, 674
BssT1I	CCWWGG	1 cut(s)	861
Bst2UI	CCWGG	2 cut(s)	99, 610
Bst4CI	ACNGT	2 cut(s)	291, 601
BstDEI	CTNAG	1 cut(s)	831
BstF5I	GGATG	5 cut(s)	149, 191, 446, 725, 736
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	3 cut(s)	43, 74, 677
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	3 cut(s)	40, 71, 674
BstNI	CCWGG	2 cut(s)	99, 610
BstNSI	RCATGY	1 cut(s)	786
BstSCI	CCNGG	3 cut(s)	97, 463, 608
BstV1I	GCAGC	4 cut(s)	136, 342, 533, 676
BstX2I	RGATCY	2 cut(s)	40, 71
BstYI	RGATCY	2 cut(s)	40, 71
BtsCI	GGATG	5 cut(s)	149, 191, 446, 725, 736
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	2 cut(s)	108, 118
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	3 cut(s)	60, 64, 783
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	1 cut(s)	831
DpnI	GATC	3 cut(s)	42, 73, 676
DpnII	GATC	3 cut(s)	40, 71, 674
Eco130I	CCWWGG	1 cut(s)	861
EcoRII	CCWGG	2 cut(s)	97, 608
EcoT14I	CCWWGG	1 cut(s)	861
EcoT22I	ATGCAT	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	3 cut(s)	63, 67, 786
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	3 cut(s)	59, 63, 782
Fnu4HI	GCNGC	4 cut(s)	125, 331, 522, 690
FokI	GGATG	5 cut(s)	136, 178, 433, 732, 743
Fsp4HI	GCNGC	4 cut(s)	125, 331, 522, 690
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	4 cut(s)	125, 331, 522, 690
GsuI	CTGGAG	5 cut(s)	120, 357, 366, 825, 845
HapII	CCGG	2 cut(s)	143, 464
HhaI	GCGC	1 cut(s)	504
Hin1II	CATG	3 cut(s)	63, 67, 786
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	305, 425
HpaII	CCGG	2 cut(s)	143, 464
HphI	GGTGA	9 cut(s)	198, 210, 243, 258, 279, 285, 306, 339, 877
Hpy166II	GTNNAC	3 cut(s)	659, 868, 886
Hpy188I	TCNGA	8 cut(s)	10, 304, 339, 513, 581, 679, 730, 839
Hpy188III	TCNNGA	3 cut(s)	52, 153, 824
Hpy8I	GTNNAC	3 cut(s)	659, 868, 886
HpyAV	CCTTC	3 cut(s)	294, 321, 354
HpyCH4III	ACNGT	2 cut(s)	291, 601
HpyCH4V	TGCA	4 cut(s)	63, 124, 521, 637
HpyF3I	CTNAG	1 cut(s)	831
Hsp92II	CATG	3 cut(s)	63, 67, 786
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	40, 71, 674
Lsp1109I	GCAGC	4 cut(s)	136, 342, 533, 676
LweI	GCATC	2 cut(s)	158, 710
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	5 cut(s)	291, 595, 649, 734, 778
MalI	GATC	3 cut(s)	42, 73, 676
MboI	GATC	3 cut(s)	40, 71, 674
MboII	GAAGA	3 cut(s)	264, 710, 856
MflI	RGATCY	2 cut(s)	40, 71
MluCI	AATT	5 cut(s)	156, 277, 459, 714, 891
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	7 cut(s)	139, 334, 361, 388, 492, 527, 820
Mph1103I	ATGCAT	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	754
MseI	TTAA	2 cut(s)	477, 623
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	2 cut(s)	143, 464
MspR9I	CCNGG	3 cut(s)	99, 465, 610
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	2 cut(s)	99, 610
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	3 cut(s)	40, 71, 674
NlaIII	CATG	3 cut(s)	63, 67, 786
NmuCI	GTSAC	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	786
PaqCI	CACCTGC	1 cut(s)	118
PciI	ACATGT	1 cut(s)	782
PctI	GAATGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	754
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	126, 332, 523, 691
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PscI	ACATGT	1 cut(s)	782
PsiI	TTATAA	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	97, 608
PspGI	CCWGG	2 cut(s)	97, 608
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	40, 71
PvuII	CAGCTG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SaqAI	TTAA	2 cut(s)	477, 623
SatI	GCNGC	4 cut(s)	125, 331, 522, 690
Sau3AI	GATC	3 cut(s)	40, 71, 674
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	99, 465, 610
SfaNI	GCATC	2 cut(s)	158, 710
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	5 cut(s)	156, 277, 459, 714, 891
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	97, 463, 608
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	2 cut(s)	291, 601
TaqI	TCGA	1 cut(s)	413
TasI	AATT	5 cut(s)	156, 277, 459, 714, 891
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	477, 623
Tru9I	TTAA	2 cut(s)	477, 623
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	291
TseI	GCWGC	4 cut(s)	124, 330, 521, 689
Tsp45I	GTSAC	1 cut(s)	291
TspDTI	ATGAA	2 cut(s)	177, 249
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	786
XmnI	GAANNNNTTC	1 cut(s)	754
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.