Rorug05G0408400

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
56394717 .. 56396247
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0408400.1

Sequence Viewer

Length: 384 bp
ATGAGCCAGCCAAAACCGATAATGGCTTATCAGAGATCGAACCGAGGCGAGCAGGAGTGGAGGGTCGGGAGTGTCGATAAAAACCAGATGGATGTATTGATCCATATCCGGGGATCTCCTTCCCAGCTTCAGGAATTGTTTCAAGGTTCACCAGGGGGTTATTATGGAACAACAAGATCAATTGGAGGAAACAATTGTTCGTTGTGTGAACCTGACTATTCTAGAAGCTCGGGAGTGCAATTGAGAGAACTAGAAAGCGAATCAAAGGATCCAAAGATCAGAAAAGCACACCAAACGCAATCTTGTGGTGGCTGTTGCATAATCTTCTCTCCGTTGGTAAAGCTACTGGATTGCTTATCCTTGGTGTTAAATTGTTGCTTTTGA

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

8.13

Isoelectric Point (pI)

61.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 94, 121, 263, 276
AcuI CTGAAG 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 109, 130
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 127, 228, 343
AluI AGCT 3 cut(s) 127, 228, 343
AlwI GGATC 4 cut(s) 94, 121, 263, 276
Ama87I CYCGRG 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 138
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 229
BamHI GGATCC 1 cut(s) 268
BccI CCATC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 110
BfaI CTAG 2 cut(s) 222, 251
Bme1390I CCNGG 2 cut(s) 110, 153
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 110, 153
BpuMI CCSGG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 104
BsaJI CCNNGG 4 cut(s) 43, 109, 152, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 130
Bse1I ACTGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 104
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 4 cut(s) 43, 109, 152, 360
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 109, 130
BseNI ACTGG 1 cut(s) 351
BseYI CCCAGC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 109, 130
BsoBI CYCGRG 1 cut(s) 229
Bsp143I GATC 6 cut(s) 35, 99, 113, 176, 268, 276
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 4 cut(s) 94, 121, 263, 276
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 4 cut(s) 43, 109, 152, 360
BssMI GATC 6 cut(s) 35, 99, 113, 176, 268, 276
BssT1I CCWWGG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 8, 50
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 6 cut(s) 38, 102, 116, 179, 271, 279
BstMBI GATC 6 cut(s) 35, 99, 113, 176, 268, 276
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 108, 151
BstX2I RGATCY 2 cut(s) 113, 268
BstYI RGATCY 2 cut(s) 113, 268
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 8, 50
CviJI RGCY 7 cut(s) 6, 10, 26, 127, 228, 312, 343
CviKI_1 RGCY 7 cut(s) 6, 10, 26, 127, 228, 312, 343
DpnI GATC 6 cut(s) 37, 101, 115, 178, 270, 278
DpnII GATC 6 cut(s) 35, 99, 113, 176, 268, 276
Eco130I CCWWGG 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaiI YATR 3 cut(s) 105, 165, 320
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 222, 251
GsaI CCCAGC 1 cut(s) 127
HapII CCGG 1 cut(s) 109
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 149, 209
Hpy188I TCNGA 2 cut(s) 33, 281
Hpy188III TCNNGA 4 cut(s) 67, 131, 222, 231
Hpy8I GTNNAC 2 cut(s) 149, 209
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 238, 318
Kzo9I GATC 6 cut(s) 35, 99, 113, 176, 268, 276
MaeI CTAG 2 cut(s) 222, 251
MalI GATC 6 cut(s) 37, 101, 115, 178, 270, 278
MboI GATC 6 cut(s) 35, 99, 113, 176, 268, 276
MboII GAAGA 1 cut(s) 316
MfeI CAATTG 3 cut(s) 180, 193, 239
MflI RGATCY 2 cut(s) 113, 268
MluCI AATT 5 cut(s) 134, 180, 193, 239, 370
MnlI CCTC 3 cut(s) 38, 54, 179
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 1 cut(s) 368
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 2 cut(s) 110, 153
MunI CAATTG 3 cut(s) 180, 193, 239
MvaI CCWGG 1 cut(s) 153
NciI CCSGG 1 cut(s) 110
NdeII GATC 6 cut(s) 35, 99, 113, 176, 268, 276
NlaIV GGNNCC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 270
PsuI RGATCY 2 cut(s) 113, 268
SaqAI TTAA 1 cut(s) 368
Sau3AI GATC 6 cut(s) 35, 99, 113, 176, 268, 276
ScrFI CCNGG 2 cut(s) 110, 153
SetI ASST 5 cut(s) 129, 148, 214, 230, 345
Sse9I AATT 5 cut(s) 134, 180, 193, 239, 370
SspMI CTAG 2 cut(s) 222, 251
StyD4I CCNGG 2 cut(s) 108, 151
StyI CCWWGG 1 cut(s) 360
TaqI TCGA 2 cut(s) 38, 75
TasI AATT 5 cut(s) 134, 180, 193, 239, 370
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TspGWI ACGGA 1 cut(s) 321
XbaI TCTAGA 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 2 cut(s) 222, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.