Rw5G043160

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
75519130 .. 75523000
3871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043160.1

Sequence Viewer

Length: 2091 bp
ATGGATCGACGGTGGAGATTTGATCGGTTTGTGGCAGCCGTGGTGTTTGTGCTACTGTTTCATCATAATCTGAGCTTCTGTTGGTGTCTCAACAGTGAAGGTTTGGCTTTGTTGAGGTTTAGGGAGAGAGTGATTAGAGACCCTTACGGGGTTTTAGGGAATTGGAATGGTGGTGGAGAAGATGATGATCCTTGTTCTTGGTTTGGGGTTGAGTGCTCATCAGATGGGAAAGTAATCAGCTTGAATTTGAAAGATCTTTGTCTTGGAGGAACATTGGCTCCTGAACTAGGGAAGCTGGTGTACATAAAGTCCATAATTTTGCGGAATAATTCTTTTACTGGGAAAATTCCTAAAGAGATTGGAGACTTAATGGAGCTGGAGGTTTTGGACTTGGGATATAATAACTTTAGTGGATCATTTCCATCTGATTTCAGCAACAATCTGTCCCTCACTACCCTTTTACTTGACAATAACCAATTTCTTGGTTGTTTATCCCCTGAAGTCCATGAGCTTAAGATGGTTTCCGAATGCCAAACAGATGAGAGCCAACTAACAGATCCTGCTTTCGGGACATCATGCATGAGCAGATCTATCAGCTGGAACGCTGCCCAACCTGGAGATACAGCTTACCGCAGGTTGCAGCAGGTGGTAGATGAGCCGGAGGCATCCAGAATTGGAAAAGCTAAAGCAACTGACAGGGTTTCATCATCCATATCGGCTTCACCATCTCCATCACCATTTTCAGCTTCAATGCCACCATCTGCTTCACCATTTTCATCATCACCATCTTCAAATTCCCCTTCACTGTCACCATCATCAGATTCTCCTTCACCATCTCCCTCAAGCAGCTTTCTGACCCCTTCACCCTCGCCTTTGATGGCACCAACTCCAGCCTCTCCGGTCCCAGTAAATCCACCAACTATTATTTTGACACCACCAGAGTCTAGTCCATCACAAACTCCATCCCCTGCTTCAATTCCGGGGCAAGGGCTTAAACATAGTTCCAAGTCAAAGAGGCACATAGTTCTGATTTGTGCAGCCGTTTTTGGAGGTTCTTTATTGATTTTACTTTCAGTCATTGGCATTATGCTTGTCCGAAGCAGTAAAGTGGTTACAGTAAGACCCTGGACAACAGGGTTAAGTGGGCAGTTGCAGAAAGCATTTGTAACAGGTGTACCAAAACTCAACCGATCAGAACTTGTGGCTGCTTGTGAAGATTTCAGTAATATAATTGGATGCTTTTCGGATGGTAACATTTATAAGGGAACTCTTTCAAGTGGGGTTGAAATCGCTGTAACATGTATAACATCAACATCTGCTGGAGACTGGTCTAAACATCTGGAGGCTCAGTTCAGAAAGAAGATAGAAACATTATCCAAGGTGAACCACAAGAACTTTGTAAACCTAATTGGGTATTGTGAAGAAGAGAAACCATTTACAAGAATGATGGTTTTTGAATATGCTCCAAATGGAACACTTTTTGAGCATCTACATATAAAAGAAGCAGAACATTTGGACTGGGGAATGAGAGTACGAATAGCCATGGGTATGGCATACTGCCTAGAGTATATGCACCAAATGACTCCACCAATACTCCAGAAGAACTTGCAATCAGCTTCTATATACCTGACCGAAGACTATGCAGCCAAAATATCAGATTTCAGCTTCTGGAATGAAGGAACTGCAGCAAAGACAAGATCAGCTGACAAAGAGCTTATGGAAGTCCCATCTGCAAGTCCAGAAAGCAATGTGTACAGCTTTGGTGTAATATTGTTTGAAATGTTCACAGGTAGAATTCCATACTCCGTGGAAGAGGGTTCTCTTGTGGACTGGGCATCACACTTTCTAAGAGGGGAGAAACCATTGGGAGAAATGGTGGATCCTATCTTAGAATCTTACCAAGAAGAAAAGCTGGAAAAACTGTTTCAAGTGATAACAGATTGTGTCCATCCTGACCCGAAACAAAGACCAAAGATGACAGAGGTCACAGCTAGGTTAAAAGAAATCACAGCCATGGAGCCAGATCGAGCCACACCGAAGTTATCACCTCTTTGGTGGGCAGAACTTGAAATTCTTTCAGAAGGAAACTGA

Protein Analysis

696

Amino Acids

76.47

Weight (kDa)

5.42

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 73 2.6e-10 Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr PF07714 410 - 666 5.7e-27 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 411 - 663 4.5e-20 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
AarI CACCTGC 1 cut(s) 634
Acc36I ACCTGC 2 cut(s) 624, 634
AccB1I GGYRCC 1 cut(s) 880
AciI CCGC 2 cut(s) 322, 631
AclWI GGATC 6 cut(s) 12, 182, 421, 551, 1874, 1887
AcsI RAATTY 5 cut(s) 244, 345, 793, 1794, 2070
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 4 cut(s) 302, 1176, 1533, 1754
AfiI CCNNNNNNNGG 4 cut(s) 148, 287, 566, 986
AflII CTTAAG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 1298
AjnI CCWGG 2 cut(s) 613, 1124
AloI GAACNNNNNNTCC 4 cut(s) 262, 294, 1334, 1366
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 4 cut(s) 92, 132, 357, 1317
AlwI GGATC 6 cut(s) 12, 182, 421, 551, 1874, 1887
AlwNI CAGNNNCTG 2 cut(s) 560, 1668
ApeKI GCWGC 8 cut(s) 35, 605, 640, 846, 1037, 1205, 1643, 1685
ApoI RAATTY 5 cut(s) 244, 345, 793, 1794, 2070
Asp700I GAANNNNTTC 1 cut(s) 1270
AspS9I GGNCC 1 cut(s) 901
AsuC2I CCSGG 1 cut(s) 981
AsuHPI GGTGA 9 cut(s) 714, 726, 759, 774, 801, 822, 855, 1393, 2037
AvaII GGWCC 1 cut(s) 901
BaeI ACNNNNGTAYC 2 cut(s) 1158, 1191
BamHI GGATCC 1 cut(s) 1879
BanI GGYRCC 1 cut(s) 880
BarI GAAGNNNNNNTAC 2 cut(s) 284, 316
BbsI GAAGAC 1 cut(s) 1641
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 8 cut(s) 47, 592, 652, 858, 1049, 1192, 1655, 1697
BceAI ACGGC 2 cut(s) 23, 1025
BcgI CGANNNNNNTGC 2 cut(s) 1622, 1656
BciT130I CCWGG 2 cut(s) 615, 1126
BcnI CCSGG 1 cut(s) 981
BcoDI GTCTC 4 cut(s) 92, 132, 357, 1317
BfaI CTAG 4 cut(s) 287, 945, 1562, 1992
BfmI CTRYAG 1 cut(s) 1683
BfrI CTTAAG 1 cut(s) 512
BfuAI ACCTGC 2 cut(s) 624, 634
BglII AGATCT 2 cut(s) 253, 587
BisI GCNGC 8 cut(s) 36, 606, 641, 847, 1038, 1206, 1644, 1686
BlsI GCNGC 8 cut(s) 37, 607, 642, 848, 1039, 1207, 1645, 1687
Bme1390I CCNGG 3 cut(s) 615, 981, 1126
Bme18I GGWCC 1 cut(s) 901
BmgT120I GGNCC 1 cut(s) 901
BmiI GGNNCC 5 cut(s) 279, 882, 903, 1881, 2019
BmrFI CCNGG 3 cut(s) 615, 981, 1126
BmrI ACTGGG 4 cut(s) 348, 899, 1528, 1840
BmsI GCATC 4 cut(s) 674, 1226, 1495, 1844
BmuI ACTGGG 4 cut(s) 348, 899, 1528, 1840
BoxI GACNNNNGTC 1 cut(s) 1982
BpiI GAAGAC 1 cut(s) 1641
BpmI CTGGAG 6 cut(s) 398, 636, 873, 1341, 1361, 1580
BpuEI CTTGAG 1 cut(s) 826
BpuMI CCSGG 1 cut(s) 981
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 7 cut(s) 39, 980, 1124, 1377, 1542, 1806, 2013
BsaWI WCCGGW 1 cut(s) 898
BsaXI ACNNNNNCTCC 8 cut(s) 262, 292, 1334, 1364, 1578, 1608, 1860, 1890
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 287, 566, 986
Bse1I ACTGG 5 cut(s) 343, 905, 1331, 1523, 1835
Bse3DI GCAATG 1 cut(s) 1753
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 615, 1126
BseDI CCNNGG 7 cut(s) 39, 980, 1124, 1377, 1542, 1806, 2013
BseGI GGATG 6 cut(s) 665, 707, 962, 1241, 1252, 1948
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 4 cut(s) 148, 287, 566, 986
BseMI GCAATG 1 cut(s) 1753
BseMII CTCAG 2 cut(s) 62, 1361
BseNI ACTGG 5 cut(s) 343, 905, 1331, 1523, 1835
BseXI GCAGC 8 cut(s) 47, 592, 652, 858, 1049, 1192, 1655, 1697
BsgI GTGCAG 1 cut(s) 1056
BshNI GGYRCC 1 cut(s) 880
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 3 cut(s) 659, 899, 980
BslFI GGGAC 4 cut(s) 430, 583, 887, 1709
BslI CCNNNNNNNGG 4 cut(s) 148, 287, 566, 986
BsmAI GTCTC 4 cut(s) 92, 132, 357, 1317
BsmFI GGGAC 4 cut(s) 430, 583, 887, 1709
BsmI GAATGC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 218
Bsp1407I TGTACA 2 cut(s) 300, 1752
Bsp19I CCATGG 2 cut(s) 1542, 2013
BspACI CCGC 2 cut(s) 322, 631
BspCNI CTCAG 2 cut(s) 63, 1360
BspLI GGNNCC 5 cut(s) 279, 882, 903, 1881, 2019
BspMAI CTGCAG 1 cut(s) 1687
BspMI ACCTGC 2 cut(s) 624, 634
BspPI GGATC 6 cut(s) 12, 182, 421, 551, 1874, 1887
BspT107I GGYRCC 1 cut(s) 880
BspTI CTTAAG 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 1753
BsrGI TGTACA 2 cut(s) 300, 1752
BsrI ACTGG 5 cut(s) 343, 905, 1331, 1523, 1835
BssECI CCNNGG 7 cut(s) 39, 980, 1124, 1377, 1542, 1806, 2013
BssT1I CCWWGG 3 cut(s) 1377, 1542, 2013
Bst2UI CCWGG 2 cut(s) 615, 1126
Bst4CI ACNGT 6 cut(s) 12, 57, 95, 807, 1117, 1923
Bst6I CTCTTC 2 cut(s) 1419, 1806
BstAFI CTTAAG 1 cut(s) 512
BstAUI TGTACA 2 cut(s) 300, 1752
BstDEI CTNAG 4 cut(s) 71, 1347, 1847, 1888
BstDSI CCRYGG 4 cut(s) 39, 1542, 1806, 2013
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 6 cut(s) 665, 707, 962, 1241, 1252, 1948
BstMAI GTCTC 4 cut(s) 92, 132, 357, 1317
BstNI CCWGG 2 cut(s) 615, 1126
BstNSI RCATGY 1 cut(s) 1302
BstPAI GACNNNNGTC 1 cut(s) 1982
BstSCI CCNGG 3 cut(s) 613, 979, 1124
BstSFI CTRYAG 1 cut(s) 1683
BstV1I GCAGC 8 cut(s) 47, 592, 652, 858, 1049, 1192, 1655, 1697
BstV2I GAAGAC 1 cut(s) 1641
BstX2I RGATCY 4 cut(s) 253, 556, 587, 1879
BstXI CCANNNNNNTGG 2 cut(s) 482, 1549
BstYI RGATCY 4 cut(s) 253, 556, 587, 1879
BtgI CCRYGG 4 cut(s) 39, 1542, 1806, 2013
BtsCI GGATG 6 cut(s) 665, 707, 962, 1241, 1252, 1948
BtsIMutI CAGTG 2 cut(s) 100, 803
BveI ACCTGC 2 cut(s) 624, 634
CaiI CAGNNNCTG 2 cut(s) 560, 1668
Cfr13I GGNCC 1 cut(s) 901
Csp6I GTAC 4 cut(s) 301, 1175, 1532, 1753
CviAII CATG 6 cut(s) 506, 576, 580, 1299, 1543, 2014
CviQI GTAC 4 cut(s) 301, 1175, 1532, 1753
DdeI CTNAG 4 cut(s) 71, 1347, 1847, 1888
Eam1104I CTCTTC 2 cut(s) 1419, 1806
EarI CTCTTC 2 cut(s) 1419, 1806
Eco130I CCWWGG 3 cut(s) 1377, 1542, 2013
Eco31I GGTCTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 519
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 1794
EcoRII CCWGG 2 cut(s) 613, 1124
EcoT14I CCWWGG 3 cut(s) 1377, 1542, 2013
EcoT22I ATGCAT 1 cut(s) 581
ErhI CCWWGG 3 cut(s) 1377, 1542, 2013
FaeI CATG 6 cut(s) 509, 579, 583, 1302, 1546, 2017
FaqI GGGAC 4 cut(s) 430, 583, 887, 1709
FatI CATG 6 cut(s) 505, 575, 579, 1298, 1542, 2013
Fnu4HI GCNGC 8 cut(s) 36, 606, 641, 847, 1038, 1206, 1644, 1686
FokI GGATG 6 cut(s) 652, 694, 949, 1248, 1259, 1935
Fsp4HI GCNGC 8 cut(s) 36, 606, 641, 847, 1038, 1206, 1644, 1686
FspBI CTAG 4 cut(s) 287, 945, 1562, 1992
GluI GCNGC 8 cut(s) 36, 606, 641, 847, 1038, 1206, 1644, 1686
GsuI CTGGAG 6 cut(s) 398, 636, 873, 1341, 1361, 1580
HapII CCGG 3 cut(s) 659, 899, 980
Hin1II CATG 6 cut(s) 509, 579, 583, 1302, 1546, 2017
HinfI GANTC 4 cut(s) 821, 941, 1582, 1892
HpaII CCGG 3 cut(s) 659, 899, 980
HphI GGTGA 9 cut(s) 714, 726, 759, 774, 801, 822, 855, 1393, 2037
Hpy166II GTNNAC 7 cut(s) 301, 1175, 1384, 1402, 1753, 1785, 1828
Hpy188III TCNNGA 8 cut(s) 281, 568, 669, 1340, 1597, 1669, 1739, 1952
Hpy8I GTNNAC 7 cut(s) 301, 1175, 1384, 1402, 1753, 1785, 1828
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 6 cut(s) 92, 810, 837, 870, 1670, 2075
HpyCH4III ACNGT 6 cut(s) 12, 57, 95, 807, 1117, 1923
HpyCH4V TGCA 9 cut(s) 579, 640, 1037, 1153, 1573, 1609, 1643, 1685, 1733
HpyF3I CTNAG 4 cut(s) 71, 1347, 1847, 1888
Hsp92II CATG 6 cut(s) 509, 579, 583, 1302, 1546, 2017
LmnI GCTCC 4 cut(s) 283, 373, 1468, 2017
Lsp1109I GCAGC 8 cut(s) 47, 592, 652, 858, 1049, 1192, 1655, 1697
LweI GCATC 4 cut(s) 674, 1226, 1495, 1844
MaeI CTAG 4 cut(s) 287, 945, 1562, 1992
MaeIII GTNAC 6 cut(s) 807, 1111, 1165, 1250, 1294, 1984
MflI RGATCY 4 cut(s) 253, 556, 587, 1879
MhlI GDGCHC 1 cut(s) 218
MlyI GAGTC 2 cut(s) 950, 1576
Mph1103I ATGCAT 1 cut(s) 581
MroXI GAANNNNTTC 1 cut(s) 1270
MseI TTAA 5 cut(s) 368, 513, 993, 1139, 1997
MslI CAYNNNNRTG 2 cut(s) 1547, 2012
MspA1I CMGCKG 2 cut(s) 597, 1703
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 3 cut(s) 659, 899, 980
MspR9I CCNGG 3 cut(s) 615, 981, 1126
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 2 cut(s) 615, 1126
NciI CCSGG 1 cut(s) 981
NcoI CCATGG 2 cut(s) 1542, 2013
NlaIII CATG 6 cut(s) 509, 579, 583, 1302, 1546, 2017
NlaIV GGNNCC 5 cut(s) 279, 882, 903, 1881, 2019
NmuCI GTSAC 2 cut(s) 807, 1984
NsiI ATGCAT 1 cut(s) 581
NspI RCATGY 1 cut(s) 1302
PaqCI CACCTGC 1 cut(s) 634
PciI ACATGT 1 cut(s) 1298
PctI GAATGC 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 1270
PfeI GAWTC 2 cut(s) 821, 1892
PkrI GCNGC 8 cut(s) 37, 607, 642, 848, 1039, 1207, 1645, 1687
PleI GAGTC 2 cut(s) 949, 1576
PpsI GAGTC 2 cut(s) 949, 1576
PscI ACATGT 1 cut(s) 1298
PshAI GACNNNNGTC 1 cut(s) 1982
PsiI TTATAA 1 cut(s) 1260
Psp6I CCWGG 2 cut(s) 613, 1124
PspGI CCWGG 2 cut(s) 613, 1124
PspN4I GGNNCC 5 cut(s) 279, 882, 903, 1881, 2019
PspPI GGNCC 1 cut(s) 901
PstI CTGCAG 1 cut(s) 1687
PstNI CAGNNNCTG 2 cut(s) 560, 1668
PsuI RGATCY 4 cut(s) 253, 556, 587, 1879
PvuII CAGCTG 2 cut(s) 597, 1703
RsaI GTAC 4 cut(s) 302, 1176, 1533, 1754
RsaNI GTAC 4 cut(s) 301, 1175, 1532, 1753
RseI CAYNNNNRTG 2 cut(s) 1547, 2012
SaqAI TTAA 5 cut(s) 368, 513, 993, 1139, 1997
SatI GCNGC 8 cut(s) 36, 606, 641, 847, 1038, 1206, 1644, 1686
Sau96I GGNCC 1 cut(s) 901
SchI GAGTC 2 cut(s) 950, 1576
ScrFI CCNGG 3 cut(s) 615, 981, 1126
SduI GDGCHC 1 cut(s) 218
SfaNI GCATC 4 cut(s) 674, 1226, 1495, 1844
SfcI CTRYAG 1 cut(s) 1683
SinI GGWCC 1 cut(s) 901
SmiMI CAYNNNNRTG 2 cut(s) 1547, 2012
SmlI CTYRAG 2 cut(s) 512, 841
SmoI CTYRAG 2 cut(s) 512, 841
SsiI CCGC 2 cut(s) 322, 631
SspI AATATT 1 cut(s) 1770
SspMI CTAG 4 cut(s) 287, 945, 1562, 1992
StyD4I CCNGG 3 cut(s) 613, 979, 1124
StyI CCWWGG 3 cut(s) 1377, 1542, 2013
TaaI ACNGT 6 cut(s) 12, 57, 95, 807, 1117, 1923
TaqI TCGA 2 cut(s) 7, 2026
TaqII GACCGA 1 cut(s) 1646
TatI WGTACW 2 cut(s) 300, 1752
TfiI GAWTC 2 cut(s) 821, 1892
Tru1I TTAA 5 cut(s) 368, 513, 993, 1139, 1997
Tru9I TTAA 5 cut(s) 368, 513, 993, 1139, 1997
TscAI CASTG 2 cut(s) 100, 810
TseFI GTSAC 2 cut(s) 807, 1984
TseI GCWGC 8 cut(s) 35, 605, 640, 846, 1037, 1205, 1643, 1685
Tsp45I GTSAC 2 cut(s) 807, 1984
TspDTI ATGAA 4 cut(s) 50, 693, 765, 1689
TspGWI ACGGA 1 cut(s) 1795
TspRI CASTG 2 cut(s) 100, 810
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 901
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 5 cut(s) 244, 345, 793, 1794, 2070
XceI RCATGY 1 cut(s) 1302
XmnI GAANNNNTTC 1 cut(s) 1270
XspI CTAG 4 cut(s) 287, 945, 1562, 1992
Zsp2I ATGCAT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.