Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005264

Physical Location & Seq

Genomic Coordinates Reverse (-)

76560484 .. 76564747

Gene Structure 4264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG481600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGGATCGACGGTGGAGATTTGATCGGTTTGTGGCAGCCGTGGTGTTTGTGCTACTGTTTCATCATAATCTGAGCTTCTGTTGGTGTCTCAACAGTGAAGGTTTGGCTTTGTTGAGGTTTAGGGAGAGAGTGATTAGAGACCCTTATGGGGTTTTAGGGAATTGGAATGGTGGTGGTGGTGGAGAAGATGATGATCCTTGTTCTTGGTTTGGGGTTGAGTGCTCATCAGATGGGAAAGTAATCAGCTTGAATTTGAAAAATCTTTGTCTTGGAGGAACATTGGCTCCTGAACTAGGGAAGCTGGTTTACATAAAATCCATAATTTTGCGGAATAATTCTTTTACTGGGAAAATTCCTAAAGAGATTGGAGACTTAATGGAGCTGGAGGTTTTGGACTTGGGATATAATAACTTTAGTGGATCATTTCCATCTGATTTCAGCAACAATCTGTCCCTCACTACCCTTTTACTTGACAATAACCAATTTCTTGGTTGTTTATCCCCTGAAGTCCATGAGCTTAAGATGGTTTCCGAATGCCAAACAGATGAGAGCCAACTAACAGATCCTGCTTTCGGGACATCATGCATGAGCAGATCTATCAGCTGGAACGCTGCCCAACCTGGAGATACAGCTTACCGCAGGTTGCAGCAGGTGGTAGATGAGCCGGAGGCATCCAGAATTGGAAAAGCTAAAGCAACTGACAGGGTTTCATCATCCATATCGGCTTCACCATCTCCATCACCATTTTCAGCTTCAATGCCACCATCTGCTTCACCATTTTCATCATCACCATCTTCAAATTCCCCTTCACCGTCACCATCATCAGATTCTCCTTCACCATCTCCCTCAAGCAGCTTTCTGACCCCTTCACCCTCGCCTTTGATAGCACCAACTCCAGCCTCTCCGGTCCCAGTAAATCCACCAACTATTATTTTGACACCACCAGAGTCTAGTCCATCACAAACTCCATCCCCTGCTTCAATTCCGGGGCAAGGGCTTAAACATAATTCCAAGTCAAAGAGGCACATAGTTCTGATTTGTGCAGCCGTTTTTGGAGGTTCTTTATTGATTTTACTTTCAGTCATTGGCATTATGCTTGTCCGAAGCAGTAAAGTGGTTACAGTAAGACCCTGGACAACAGGGTTAAGTGGGCAGTTGCAGAAAGCATTTGTAACAGGTGTACCAAAACTCAACCGATCAGAACTTGTGGCTGCTTGTGAAGATTTCAGTAATATAATTGGATGCTTTTCGGATGGTAACATTTATAAGGGAACTCTTTCAAGTGGGGTTGAAATCGCTGTAACATGTATAACATCAACATCTGCTGGAGACTGGTCTAAACATCTGGAGGCTCAGTTCAGAAAGAAGATAGAAACATTATCCAAGGTGAACCACAAGAACTTTGTAAACCTAATTGGGTATTGTGAAGAAGAGAAACCATTCACAAGAATGATGGTTTTTGAATATGCTCCAAATGGAACACTTTTTGAGCATCTACATAGTGAGTATACAATGAAATTTGTAGTATCTTTCACAGTAGTTTTTGCTCTTACAGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

520

Amino Acids

56.27

Weight (kDa)

6.33

Isoelectric Point (pI)

64.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 75	5.5e-10	Leucine rich repeat N-terminal domain
LRR_8	PF13855	105 - 162	9.1e-06	Leucine rich repeat
PK_Tyr_Ser-Thr	PF07714	411 - 502	2.1e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	413 - 504	6.7e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58540 AT5G58540 AT5G58540
fragaria_vesca	FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310
malus_domestica	MD03G1062400.v1.1 MD11G1066000.v1.1
prunus_persica	Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1
pyrus_communis	pycom03g05000 pycom11g05590
rosa_chinensis	RchiOBHm_Chr5g0070741
rosa_laevigata	RLG00000036155
rosa_multiflora	Rmu_sc0002944.1_g000040 Rmu_sc0036080.1_g000001 Rmu_sc0041274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010450
rosa_rugosa	Rorug05G0408300 Rorug05G0408400
rosa_samantha	Rh5AG463700 Rh5BG481600 Rh5CG505900 Rh5DG494100
rosa_wichuraiana	Rw5G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1266
AarI	CACCTGC	1 cut(s)	640
Acc36I	ACCTGC	2 cut(s)	630, 640
AccI	GTMKAC	1 cut(s)	1508
AciI	CCGC	2 cut(s)	328, 637
AclWI	GGATC	4 cut(s)	12, 188, 427, 557
AcsI	RAATTY	4 cut(s)	250, 351, 799, 1517
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	1 cut(s)	1182
AfiI	CCNNNNNNNGG	4 cut(s)	148, 293, 572, 992
AflII	CTTAAG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	1304
AgsI	TTSAA	8 cut(s)	250, 256, 756, 798, 981, 1281, 1292, 1463
AjnI	CCWGG	2 cut(s)	619, 1130
AloI	GAACNNNNNNTCC	4 cut(s)	268, 300, 1340, 1372
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	4 cut(s)	92, 132, 363, 1323
AlwI	GGATC	4 cut(s)	12, 188, 427, 557
AlwNI	CAGNNNCTG	1 cut(s)	566
ApeKI	GCWGC	6 cut(s)	35, 611, 646, 852, 1043, 1211
ApoI	RAATTY	4 cut(s)	250, 351, 799, 1517
Asp700I	GAANNNNTTC	2 cut(s)	1276, 1439
AspS9I	GGNCC	1 cut(s)	907
AsuC2I	CCSGG	1 cut(s)	987
AsuHPI	GGTGA	9 cut(s)	720, 732, 765, 780, 801, 807, 828, 861, 1399
AvaII	GGWCC	1 cut(s)	907
BaeI	ACNNNNGTAYC	2 cut(s)	1164, 1197
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	6 cut(s)	47, 598, 658, 864, 1055, 1198
BceAI	ACGGC	2 cut(s)	23, 1031
BciT130I	CCWGG	2 cut(s)	621, 1132
BcnI	CCSGG	1 cut(s)	987
BcoDI	GTCTC	4 cut(s)	92, 132, 363, 1323
BfaI	CTAG	2 cut(s)	293, 951
BfrI	CTTAAG	1 cut(s)	518
BfuAI	ACCTGC	2 cut(s)	630, 640
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	6 cut(s)	36, 612, 647, 853, 1044, 1212
BlsI	GCNGC	6 cut(s)	37, 613, 648, 854, 1045, 1213
Bme1390I	CCNGG	3 cut(s)	621, 987, 1132
Bme18I	GGWCC	1 cut(s)	907
BmgT120I	GGNCC	1 cut(s)	907
BmiI	GGNNCC	2 cut(s)	285, 909
BmrFI	CCNGG	3 cut(s)	621, 987, 1132
BmrI	ACTGGG	2 cut(s)	354, 905
BmsI	GCATC	3 cut(s)	680, 1232, 1501
BmuI	ACTGGG	2 cut(s)	354, 905
BpmI	CTGGAG	5 cut(s)	404, 642, 879, 1347, 1367
BpuEI	CTTGAG	1 cut(s)	832
BpuMI	CCSGG	1 cut(s)	987
BsaBI	GATNNNNATC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	39, 986, 1130, 1383
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	4 cut(s)	268, 298, 1340, 1370
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 293, 572, 992
Bse1I	ACTGG	3 cut(s)	349, 911, 1337
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	621, 1132
BseDI	CCNNGG	4 cut(s)	39, 986, 1130, 1383
BseGI	GGATG	5 cut(s)	671, 713, 968, 1247, 1258
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	148, 293, 572, 992
BseMII	CTCAG	2 cut(s)	62, 1367
BseNI	ACTGG	3 cut(s)	349, 911, 1337
BseXI	GCAGC	6 cut(s)	47, 598, 658, 864, 1055, 1198
BsgI	GTGCAG	1 cut(s)	1062
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	3 cut(s)	665, 905, 986
BslFI	GGGAC	3 cut(s)	436, 589, 893
BslI	CCNNNNNNNGG	4 cut(s)	148, 293, 572, 992
BsmAI	GTCTC	4 cut(s)	92, 132, 363, 1323
BsmFI	GGGAC	3 cut(s)	436, 589, 893
BsmI	GAATGC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
BspACI	CCGC	2 cut(s)	328, 637
BspCNI	CTCAG	2 cut(s)	63, 1366
BspLI	GGNNCC	2 cut(s)	285, 909
BspMI	ACCTGC	2 cut(s)	630, 640
BspPI	GGATC	4 cut(s)	12, 188, 427, 557
BspTI	CTTAAG	1 cut(s)	518
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	349, 911, 1337
BssECI	CCNNGG	4 cut(s)	39, 986, 1130, 1383
BssMI	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
BssNAI	GTATAC	1 cut(s)	1509
BssT1I	CCWWGG	1 cut(s)	1383
Bst1107I	GTATAC	1 cut(s)	1509
Bst2UI	CCWGG	2 cut(s)	621, 1132
Bst4CI	ACNGT	7 cut(s)	12, 57, 95, 813, 1123, 1537, 1555
Bst6I	CTCTTC	1 cut(s)	1425
BstAFI	CTTAAG	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	71, 1353
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	5 cut(s)	671, 713, 968, 1247, 1258
BstKTI	GATC	7 cut(s)	7, 25, 196, 422, 565, 596, 1199
BstMAI	GTCTC	4 cut(s)	92, 132, 363, 1323
BstMBI	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
BstNI	CCWGG	2 cut(s)	621, 1132
BstNSI	RCATGY	1 cut(s)	1308
BstSCI	CCNGG	3 cut(s)	619, 985, 1130
BstV1I	GCAGC	6 cut(s)	47, 598, 658, 864, 1055, 1198
BstX2I	RGATCY	2 cut(s)	562, 593
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstYI	RGATCY	2 cut(s)	562, 593
BstZ17I	GTATAC	1 cut(s)	1509
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	671, 713, 968, 1247, 1258
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	2 cut(s)	630, 640
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr13I	GGNCC	1 cut(s)	907
Csp6I	GTAC	1 cut(s)	1181
CviAII	CATG	4 cut(s)	512, 582, 586, 1305
CviQI	GTAC	1 cut(s)	1181
DdeI	CTNAG	2 cut(s)	71, 1353
DpnI	GATC	7 cut(s)	6, 24, 195, 421, 564, 595, 1198
DpnII	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
Eam1104I	CTCTTC	1 cut(s)	1425
EarI	CTCTTC	1 cut(s)	1425
Eco130I	CCWWGG	1 cut(s)	1383
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	907
Eco57I	CTGAAG	1 cut(s)	525
EcoNI	CCTNNNNNAGG	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	619, 1130
EcoT14I	CCWWGG	1 cut(s)	1383
EcoT22I	ATGCAT	1 cut(s)	587
ErhI	CCWWGG	1 cut(s)	1383
FaeI	CATG	4 cut(s)	515, 585, 589, 1308
FaqI	GGGAC	3 cut(s)	436, 589, 893
FatI	CATG	4 cut(s)	511, 581, 585, 1304
FblI	GTMKAC	1 cut(s)	1508
Fnu4HI	GCNGC	6 cut(s)	36, 612, 647, 853, 1044, 1212
FokI	GGATG	5 cut(s)	658, 700, 955, 1254, 1265
Fsp4HI	GCNGC	6 cut(s)	36, 612, 647, 853, 1044, 1212
FspBI	CTAG	2 cut(s)	293, 951
GluI	GCNGC	6 cut(s)	36, 612, 647, 853, 1044, 1212
GsuI	CTGGAG	5 cut(s)	404, 642, 879, 1347, 1367
HapII	CCGG	3 cut(s)	665, 905, 986
Hin1II	CATG	4 cut(s)	515, 585, 589, 1308
HinfI	GANTC	2 cut(s)	827, 947
HpaII	CCGG	3 cut(s)	665, 905, 986
HphI	GGTGA	9 cut(s)	720, 732, 765, 780, 801, 807, 828, 861, 1399
Hpy166II	GTNNAC	5 cut(s)	307, 1181, 1390, 1408, 1509
Hpy188III	TCNNGA	4 cut(s)	287, 574, 675, 1346
Hpy8I	GTNNAC	5 cut(s)	307, 1181, 1390, 1408, 1509
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	92, 816, 843, 876
HpyCH4III	ACNGT	7 cut(s)	12, 57, 95, 813, 1123, 1537, 1555
HpyCH4V	TGCA	4 cut(s)	585, 646, 1043, 1159
HpyF3I	CTNAG	2 cut(s)	71, 1353
Hsp92II	CATG	4 cut(s)	515, 585, 589, 1308
Kzo9I	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
LmnI	GCTCC	3 cut(s)	289, 379, 1474
Lsp1109I	GCAGC	6 cut(s)	47, 598, 658, 864, 1055, 1198
LweI	GCATC	3 cut(s)	680, 1232, 1501
MaeI	CTAG	2 cut(s)	293, 951
MaeIII	GTNAC	5 cut(s)	813, 1117, 1171, 1256, 1300
MalI	GATC	7 cut(s)	6, 24, 195, 421, 564, 595, 1198
MboI	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
MboII	GAAGA	6 cut(s)	197, 786, 1232, 1378, 1439, 1442
MflI	RGATCY	2 cut(s)	562, 593
MhlI	GDGCHC	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	956
Mph1103I	ATGCAT	1 cut(s)	587
MroXI	GAANNNNTTC	2 cut(s)	1276, 1439
MseI	TTAA	5 cut(s)	374, 519, 999, 1145, 1561
MslI	CAYNNNNRTG	1 cut(s)	1448
MspA1I	CMGCKG	1 cut(s)	603
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	3 cut(s)	665, 905, 986
MspR9I	CCNGG	3 cut(s)	621, 987, 1132
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	2 cut(s)	621, 1132
NciI	CCSGG	1 cut(s)	987
NdeII	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
NlaIII	CATG	4 cut(s)	515, 585, 589, 1308
NlaIV	GGNNCC	2 cut(s)	285, 909
NmuCI	GTSAC	1 cut(s)	813
NsiI	ATGCAT	1 cut(s)	587
NspI	RCATGY	1 cut(s)	1308
PaqCI	CACCTGC	1 cut(s)	640
PciI	ACATGT	1 cut(s)	1304
PctI	GAATGC	1 cut(s)	539
PdmI	GAANNNNTTC	2 cut(s)	1276, 1439
PfeI	GAWTC	1 cut(s)	827
PkrI	GCNGC	6 cut(s)	37, 613, 648, 854, 1045, 1213
PleI	GAGTC	1 cut(s)	955
PpsI	GAGTC	1 cut(s)	955
PscI	ACATGT	1 cut(s)	1304
PsiI	TTATAA	1 cut(s)	1266
Psp6I	CCWGG	2 cut(s)	619, 1130
PspGI	CCWGG	2 cut(s)	619, 1130
PspN4I	GGNNCC	2 cut(s)	285, 909
PspPI	GGNCC	1 cut(s)	907
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	2 cut(s)	562, 593
PvuII	CAGCTG	1 cut(s)	603
RsaI	GTAC	1 cut(s)	1182
RsaNI	GTAC	1 cut(s)	1181
RseI	CAYNNNNRTG	1 cut(s)	1448
SaqAI	TTAA	5 cut(s)	374, 519, 999, 1145, 1561
SatI	GCNGC	6 cut(s)	36, 612, 647, 853, 1044, 1212
Sau3AI	GATC	7 cut(s)	4, 22, 193, 419, 562, 593, 1196
Sau96I	GGNCC	1 cut(s)	907
SchI	GAGTC	1 cut(s)	956
ScrFI	CCNGG	3 cut(s)	621, 987, 1132
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	3 cut(s)	680, 1232, 1501
SinI	GGWCC	1 cut(s)	907
SmiMI	CAYNNNNRTG	1 cut(s)	1448
SmlI	CTYRAG	2 cut(s)	518, 847
SmoI	CTYRAG	2 cut(s)	518, 847
SsiI	CCGC	2 cut(s)	328, 637
SspMI	CTAG	2 cut(s)	293, 951
StyD4I	CCNGG	3 cut(s)	619, 985, 1130
StyI	CCWWGG	1 cut(s)	1383
TaaI	ACNGT	7 cut(s)	12, 57, 95, 813, 1123, 1537, 1555
TaqI	TCGA	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	827
Tru1I	TTAA	5 cut(s)	374, 519, 999, 1145, 1561
Tru9I	TTAA	5 cut(s)	374, 519, 999, 1145, 1561
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	813
TseI	GCWGC	6 cut(s)	35, 611, 646, 852, 1043, 1211
Tsp45I	GTSAC	1 cut(s)	813
TspDTI	ATGAA	4 cut(s)	50, 699, 771, 1529
TspRI	CASTG	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	907
XagI	CCTNNNNNAGG	1 cut(s)	291
XapI	RAATTY	4 cut(s)	250, 351, 799, 1517
XceI	RCATGY	1 cut(s)	1308
XmiI	GTMKAC	1 cut(s)	1508
XmnI	GAANNNNTTC	2 cut(s)	1276, 1439
XspI	CTAG	2 cut(s)	293, 951
Zsp2I	ATGCAT	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.