Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005264

Physical Location & Seq

Genomic Coordinates Reverse (-)

70267332 .. 70271595

Gene Structure 4264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG505900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGAGCTGGAGGTTTTGGACTTGGGATATAATAACTTTAGTGGATCATTTCCATCTGATTTCAGCAACAATCTGTCCCTCACTACCCTTTTACTTGACAATAACCAATTTCTTGGTTGTTTATCCCCTGAAGTCCATGAGCTTAAGATGGTTTCCGAATGCCAAACAGATGAGAGCCAACTAACAGATCCTGCTTTCGGGACATCATGCATGAGCAGATCTATCAGCTGGAACGCTGCCCAACCTGGAGATACAGCTTACCGCAGGTTGCAGCAGGTGGTAGATGAGCCGGAGGCATCCAGAATTGGAAAAGCTAAAGCAACTGACAGGGTTTCATCATCCATATCGGCTTCACCATCTCCATCACCATTTTCAGCTTCAATGCCACCATCTGCTTCACCATTTTCATCATCACCATCTTCAAATTCCCCTTCACCGTCACCATCATCAGATTCTCCTTCACCATCTCCCTCAAGCAGCTTTCTGACCCCTTCACCCTCGCCTTTGATAGCACCAACTCCAGCCTCTCCGGTCCCAGTAAATCCACCAACTATTATTTTGACACCACCAGAGTCTAGTCCATCACAAACTCCATCCCCTGCTTCAATTCCGGGGCAAGGGCTTAAACATAATTCCAAGTCAAAGAGGCACATAGTTCTGATTTGTGCAGCCGTTTTTGGAGGTTCTTTATTGATTTTACTTTCAGTCATTGGCATTATGCTTGTCCGAAGCAGTAAAGTGGTTACAGTAAGACCCTGGACAACAGGGTTAAGTGGGCAGTTGCAGAAAGCATTTGTAACAGGTGTACCAAAACTCAACCGATCAGAACTTGTGGCTGCTTGTGAAGATTTCAGTAATATAATTGGATGCTTTTCGGATGGTAACATTTATAAGGGAACTCTTTCAAGTGGGGTTGAAATCGCTGTAACATGTATAACATCAACATCTGCTGGAGACTGGTCTAAACATCTGGAGGCTCAGTTCAGAAAGAAGATAGAAACATTATCCAAGGTGAACCACAAGAACTTTGTAAACCTAATTGGGTATTGTGAAGAAGAGAAACCATTCACAAGAATGATGGTTTTTGAATATGCTCCAAATGGAACACTTTTTGAGCATCTACATATAAAAGAAGCAGAACATTTGGACTGGGGAATGAGAGTACGAATAGCCATGGGTATGGCATACTGCCTAGAGTATATGCACCAAATGACTCCACCAATACTCCAGAAGAACTTGCAATCAGCTTCTATATACCTGACTGAAGACTATGCAGCCAAAATATCAGATTTCAGCTTCTGGAATGAAGGAACTGCAGCAAAGACAAGATCAGCTGACAAAGAGCTTATGGAAGTCCCATCTGCAAGTCCAGAAAGCAATGTGTACAGCTTTGGTGTAATATTGTTTGAAATGTTCACCGGTAGAATTCCATACTCCGTGGAAGAGGGTTCTCTTGTGGACTGGGCATCACACTATCTAAGAGGGGAGAAACCATTGGGAGAAATGGTGGATCCTATCTTAGAATCTTACCAAGAAGAAGAGCTGGAAAAACTGTTTCAAGTGATAACAGATTGTGTCCATCCTGACCCGAAACAAAGACCAAAGATGACAGAGATCACAGCGAGGTTAAAAGAAATCACAGCCATGGAGCCAGATCGAGCCACACCGAAGTTATCACCTCTTTGGTGGGCAGAACTTGAAATTCTTTCAGAAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

573

Amino Acids

62.62

Weight (kDa)

5.16

Isoelectric Point (pI)

67.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	286 - 543	1.7e-27	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	288 - 540	2.6e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58540 AT5G58540 AT5G58540
fragaria_vesca	FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310
malus_domestica	MD03G1062400.v1.1 MD11G1066000.v1.1
prunus_persica	Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1
pyrus_communis	pycom03g05000 pycom11g05590
rosa_chinensis	RchiOBHm_Chr5g0070741
rosa_laevigata	RLG00000036155
rosa_multiflora	Rmu_sc0002944.1_g000040 Rmu_sc0036080.1_g000001 Rmu_sc0041274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010450
rosa_rugosa	Rorug05G0408300 Rorug05G0408400
rosa_samantha	Rh5AG463700 Rh5BG481600 Rh5CG505900 Rh5DG494100
rosa_wichuraiana	Rw5G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	891
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	2 cut(s)	255, 265
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	4 cut(s)	52, 182, 1505, 1518
AcsI	RAATTY	3 cut(s)	424, 1425, 1701
AcuI	CTGAAG	2 cut(s)	150, 1284
AfaI	GTAC	3 cut(s)	807, 1164, 1385
AfiI	CCNNNNNNNGG	2 cut(s)	197, 617
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	929
AgeI	ACCGGT	1 cut(s)	1418
AgsI	TTSAA	9 cut(s)	381, 423, 606, 906, 917, 1088, 1409, 1559, 1700
AjnI	CCWGG	2 cut(s)	244, 755
AloI	GAACNNNNNNTCC	2 cut(s)	965, 997
Alw26I	GTCTC	1 cut(s)	948
AlwI	GGATC	4 cut(s)	52, 182, 1505, 1518
AlwNI	CAGNNNCTG	2 cut(s)	191, 1299
ApeKI	GCWGC	7 cut(s)	236, 271, 477, 668, 836, 1274, 1316
ApoI	RAATTY	3 cut(s)	424, 1425, 1701
AsiGI	ACCGGT	1 cut(s)	1418
Asp700I	GAANNNNTTC	2 cut(s)	901, 1064
AspS9I	GGNCC	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	532
BaeI	ACNNNNGTAYC	2 cut(s)	789, 822
BamHI	GGATCC	1 cut(s)	1510
BbsI	GAAGAC	1 cut(s)	1272
BbvI	GCAGC	7 cut(s)	223, 283, 489, 680, 823, 1286, 1328
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	2 cut(s)	246, 757
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	948
BfaI	CTAG	2 cut(s)	576, 1193
BfmI	CTRYAG	1 cut(s)	1314
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	255, 265
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	7 cut(s)	237, 272, 478, 669, 837, 1275, 1317
BlsI	GCNGC	7 cut(s)	238, 273, 479, 670, 838, 1276, 1318
Bme1390I	CCNGG	3 cut(s)	246, 612, 757
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	3 cut(s)	534, 1512, 1650
BmrFI	CCNGG	3 cut(s)	246, 612, 757
BmrI	ACTGGG	3 cut(s)	530, 1159, 1471
BmsI	GCATC	4 cut(s)	305, 857, 1126, 1475
BmuI	ACTGGG	3 cut(s)	530, 1159, 1471
BpiI	GAAGAC	1 cut(s)	1272
BpmI	CTGGAG	6 cut(s)	29, 267, 504, 972, 992, 1211
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	6 cut(s)	611, 755, 1008, 1173, 1437, 1644
BsaWI	WCCGGW	2 cut(s)	529, 1418
BsaXI	ACNNNNNCTCC	6 cut(s)	965, 995, 1209, 1239, 1491, 1521
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 617
Bse118I	RCCGGY	1 cut(s)	1418
Bse1I	ACTGG	4 cut(s)	536, 962, 1154, 1466
Bse3DI	GCAATG	1 cut(s)	1384
BseBI	CCWGG	2 cut(s)	246, 757
BseDI	CCNNGG	6 cut(s)	611, 755, 1008, 1173, 1437, 1644
BseGI	GGATG	6 cut(s)	296, 338, 593, 872, 883, 1579
BseLI	CCNNNNNNNGG	2 cut(s)	197, 617
BseMI	GCAATG	1 cut(s)	1384
BseMII	CTCAG	1 cut(s)	992
BseNI	ACTGG	4 cut(s)	536, 962, 1154, 1466
BseXI	GCAGC	7 cut(s)	223, 283, 489, 680, 823, 1286, 1328
BsgI	GTGCAG	1 cut(s)	687
BshTI	ACCGGT	1 cut(s)	1418
BsiSI	CCGG	4 cut(s)	290, 530, 611, 1419
BslFI	GGGAC	4 cut(s)	61, 214, 518, 1340
BslI	CCNNNNNNNGG	2 cut(s)	197, 617
BsmAI	GTCTC	1 cut(s)	948
BsmFI	GGGAC	4 cut(s)	61, 214, 518, 1340
BsmI	GAATGC	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	1383
Bsp143I	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
Bsp19I	CCATGG	2 cut(s)	1173, 1644
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	991
BspLI	GGNNCC	3 cut(s)	534, 1512, 1650
BspMAI	CTGCAG	1 cut(s)	1318
BspMI	ACCTGC	2 cut(s)	255, 265
BspPI	GGATC	4 cut(s)	52, 182, 1505, 1518
BspQI	GCTCTTC	1 cut(s)	1533
BspTI	CTTAAG	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	1384
BsrFI	RCCGGY	1 cut(s)	1418
BsrGI	TGTACA	1 cut(s)	1383
BsrI	ACTGG	4 cut(s)	536, 962, 1154, 1466
BssAI	RCCGGY	1 cut(s)	1418
BssECI	CCNNGG	6 cut(s)	611, 755, 1008, 1173, 1437, 1644
BssMI	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
BssT1I	CCWWGG	3 cut(s)	1008, 1173, 1644
Bst2UI	CCWGG	2 cut(s)	246, 757
Bst4CI	ACNGT	3 cut(s)	438, 748, 1554
Bst6I	CTCTTC	3 cut(s)	1050, 1437, 1533
BstAFI	CTTAAG	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	1383
BstDEI	CTNAG	3 cut(s)	978, 1478, 1519
BstDSI	CCRYGG	3 cut(s)	1173, 1437, 1644
BstF5I	GGATG	6 cut(s)	296, 338, 593, 872, 883, 1579
BstKTI	GATC	8 cut(s)	47, 190, 221, 824, 1331, 1513, 1617, 1657
BstMAI	GTCTC	1 cut(s)	948
BstMBI	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
BstNI	CCWGG	2 cut(s)	246, 757
BstNSI	RCATGY	1 cut(s)	933
BstSCI	CCNGG	3 cut(s)	244, 610, 755
BstSFI	CTRYAG	1 cut(s)	1314
BstV1I	GCAGC	7 cut(s)	223, 283, 489, 680, 823, 1286, 1328
BstV2I	GAAGAC	1 cut(s)	1272
BstX2I	RGATCY	3 cut(s)	187, 218, 1510
BstXI	CCANNNNNNTGG	2 cut(s)	113, 1180
BstYI	RGATCY	3 cut(s)	187, 218, 1510
BtgI	CCRYGG	3 cut(s)	1173, 1437, 1644
BtsCI	GGATG	6 cut(s)	296, 338, 593, 872, 883, 1579
BveI	ACCTGC	2 cut(s)	255, 265
CaiI	CAGNNNCTG	2 cut(s)	191, 1299
Cfr10I	RCCGGY	1 cut(s)	1418
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	3 cut(s)	806, 1163, 1384
CspAI	ACCGGT	1 cut(s)	1418
CviAII	CATG	6 cut(s)	137, 207, 211, 930, 1174, 1645
CviQI	GTAC	3 cut(s)	806, 1163, 1384
DdeI	CTNAG	3 cut(s)	978, 1478, 1519
DpnI	GATC	8 cut(s)	46, 189, 220, 823, 1330, 1512, 1616, 1656
DpnII	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
Eam1104I	CTCTTC	3 cut(s)	1050, 1437, 1533
EarI	CTCTTC	3 cut(s)	1050, 1437, 1533
Eco130I	CCWWGG	3 cut(s)	1008, 1173, 1644
Eco47I	GGWCC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	150, 1284
EcoRI	GAATTC	1 cut(s)	1425
EcoRII	CCWGG	2 cut(s)	244, 755
EcoT14I	CCWWGG	3 cut(s)	1008, 1173, 1644
EcoT22I	ATGCAT	1 cut(s)	212
ErhI	CCWWGG	3 cut(s)	1008, 1173, 1644
FaeI	CATG	6 cut(s)	140, 210, 214, 933, 1177, 1648
FaqI	GGGAC	4 cut(s)	61, 214, 518, 1340
FatI	CATG	6 cut(s)	136, 206, 210, 929, 1173, 1644
Fnu4HI	GCNGC	7 cut(s)	237, 272, 478, 669, 837, 1275, 1317
FokI	GGATG	6 cut(s)	283, 325, 580, 879, 890, 1566
Fsp4HI	GCNGC	7 cut(s)	237, 272, 478, 669, 837, 1275, 1317
FspBI	CTAG	2 cut(s)	576, 1193
GluI	GCNGC	7 cut(s)	237, 272, 478, 669, 837, 1275, 1317
GsuI	CTGGAG	6 cut(s)	29, 267, 504, 972, 992, 1211
HapII	CCGG	4 cut(s)	290, 530, 611, 1419
Hin1II	CATG	6 cut(s)	140, 210, 214, 933, 1177, 1648
HinfI	GANTC	4 cut(s)	452, 572, 1213, 1523
HpaII	CCGG	4 cut(s)	290, 530, 611, 1419
Hpy166II	GTNNAC	6 cut(s)	806, 1015, 1033, 1384, 1416, 1459
Hpy188III	TCNNGA	7 cut(s)	199, 300, 971, 1228, 1300, 1370, 1583
Hpy8I	GTNNAC	6 cut(s)	806, 1015, 1033, 1384, 1416, 1459
HpyAV	CCTTC	5 cut(s)	441, 468, 501, 1301, 1706
HpyCH4III	ACNGT	3 cut(s)	438, 748, 1554
HpyCH4V	TGCA	9 cut(s)	210, 271, 668, 784, 1204, 1240, 1274, 1316, 1364
HpyF3I	CTNAG	3 cut(s)	978, 1478, 1519
Hsp92II	CATG	6 cut(s)	140, 210, 214, 933, 1177, 1648
Kzo9I	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
LguI	GCTCTTC	1 cut(s)	1533
LmnI	GCTCC	3 cut(s)	4, 1099, 1648
Lsp1109I	GCAGC	7 cut(s)	223, 283, 489, 680, 823, 1286, 1328
LweI	GCATC	4 cut(s)	305, 857, 1126, 1475
MaeI	CTAG	2 cut(s)	576, 1193
MaeIII	GTNAC	5 cut(s)	438, 742, 796, 881, 925
MalI	GATC	8 cut(s)	46, 189, 220, 823, 1330, 1512, 1616, 1656
MboI	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
MflI	RGATCY	3 cut(s)	187, 218, 1510
MluCI	AATT	9 cut(s)	107, 303, 424, 606, 631, 861, 1038, 1425, 1701
MlyI	GAGTC	2 cut(s)	581, 1207
Mph1103I	ATGCAT	1 cut(s)	212
MroXI	GAANNNNTTC	2 cut(s)	901, 1064
MseI	TTAA	4 cut(s)	144, 624, 770, 1628
MslI	CAYNNNNRTG	3 cut(s)	1073, 1178, 1643
MspA1I	CMGCKG	2 cut(s)	228, 1334
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	4 cut(s)	290, 530, 611, 1419
MspR9I	CCNGG	3 cut(s)	246, 612, 757
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	2 cut(s)	246, 757
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	2 cut(s)	1173, 1644
NdeII	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
NlaIII	CATG	6 cut(s)	140, 210, 214, 933, 1177, 1648
NlaIV	GGNNCC	3 cut(s)	534, 1512, 1650
NmuCI	GTSAC	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	212
NspI	RCATGY	1 cut(s)	933
PaqCI	CACCTGC	1 cut(s)	265
PciI	ACATGT	1 cut(s)	929
PciSI	GCTCTTC	1 cut(s)	1533
PctI	GAATGC	1 cut(s)	164
PdmI	GAANNNNTTC	2 cut(s)	901, 1064
PfeI	GAWTC	2 cut(s)	452, 1523
PinAI	ACCGGT	1 cut(s)	1418
PkrI	GCNGC	7 cut(s)	238, 273, 479, 670, 838, 1276, 1318
PleI	GAGTC	2 cut(s)	580, 1207
PpsI	GAGTC	2 cut(s)	580, 1207
PscI	ACATGT	1 cut(s)	929
PsiI	TTATAA	1 cut(s)	891
Psp6I	CCWGG	2 cut(s)	244, 755
PspGI	CCWGG	2 cut(s)	244, 755
PspN4I	GGNNCC	3 cut(s)	534, 1512, 1650
PspPI	GGNCC	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	1318
PstNI	CAGNNNCTG	2 cut(s)	191, 1299
PsuI	RGATCY	3 cut(s)	187, 218, 1510
PvuII	CAGCTG	2 cut(s)	228, 1334
RsaI	GTAC	3 cut(s)	807, 1164, 1385
RsaNI	GTAC	3 cut(s)	806, 1163, 1384
RseI	CAYNNNNRTG	3 cut(s)	1073, 1178, 1643
SapI	GCTCTTC	1 cut(s)	1533
SaqAI	TTAA	4 cut(s)	144, 624, 770, 1628
SatI	GCNGC	7 cut(s)	237, 272, 478, 669, 837, 1275, 1317
Sau3AI	GATC	8 cut(s)	44, 187, 218, 821, 1328, 1510, 1614, 1654
Sau96I	GGNCC	1 cut(s)	532
SchI	GAGTC	2 cut(s)	581, 1207
ScrFI	CCNGG	3 cut(s)	246, 612, 757
SfaNI	GCATC	4 cut(s)	305, 857, 1126, 1475
SfcI	CTRYAG	1 cut(s)	1314
SinI	GGWCC	1 cut(s)	532
SmiMI	CAYNNNNRTG	3 cut(s)	1073, 1178, 1643
SmlI	CTYRAG	2 cut(s)	143, 472
SmoI	CTYRAG	2 cut(s)	143, 472
Sse9I	AATT	9 cut(s)	107, 303, 424, 606, 631, 861, 1038, 1425, 1701
SsiI	CCGC	1 cut(s)	262
SspI	AATATT	1 cut(s)	1401
SspMI	CTAG	2 cut(s)	576, 1193
StyD4I	CCNGG	3 cut(s)	244, 610, 755
StyI	CCWWGG	3 cut(s)	1008, 1173, 1644
TaaI	ACNGT	3 cut(s)	438, 748, 1554
TaqI	TCGA	1 cut(s)	1657
TasI	AATT	9 cut(s)	107, 303, 424, 606, 631, 861, 1038, 1425, 1701
TatI	WGTACW	1 cut(s)	1383
TfiI	GAWTC	2 cut(s)	452, 1523
Tru1I	TTAA	4 cut(s)	144, 624, 770, 1628
Tru9I	TTAA	4 cut(s)	144, 624, 770, 1628
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	7 cut(s)	236, 271, 477, 668, 836, 1274, 1316
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	3 cut(s)	324, 396, 1320
TspGWI	ACGGA	1 cut(s)	1426
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	3 cut(s)	424, 1425, 1701
XceI	RCATGY	1 cut(s)	933
XmnI	GAANNNNTTC	2 cut(s)	901, 1064
XspI	CTAG	2 cut(s)	576, 1193
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.