Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036080.1

Orthogroup ID

OG0005264

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 531

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgcaccaaatgactccaccaatactccagaagaacttgcaatcagcttctatatacctgaccgaagactatgcagccaaaatatcagatttcagcttctggaatgaaggaactgcagcaaagacaagatcagctgacaaagagcttatggaagtcccatctgcaagtccagaaagcaatgtgtacagctttggtgtaatattgtttgaaatgttcaccggtagaattccatactccgtggaagagggttctcttgtggactgggcatcacactatctaagaggggagaaaccattgggagaaatggtggatcctatcttagaatcttaccaagaagaaaagctggaaaaactgtttcaagtgataacagattgtgtccatcctgacccgaaacaaagaccaaagatgacagagatcacagctaggttaaaagaaatcacagccatggagccagatcgagccacaccgaagttatcacctctttggtgggcagaacttgaaattctttcagaaggaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

173

Amino Acids

19.7

Weight (kDa)

4.74

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58540 AT5G58540 AT5G58540
fragaria_vesca	FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310
malus_domestica	MD03G1062400.v1.1 MD11G1066000.v1.1
prunus_persica	Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1
pyrus_communis	pycom03g05000 pycom11g05590
rosa_chinensis	RchiOBHm_Chr5g0070741
rosa_laevigata	RLG00000036155
rosa_multiflora	Rmu_sc0002944.1_g000040 Rmu_sc0036080.1_g000001 Rmu_sc0041274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010450
rosa_rugosa	Rorug05G0408300 Rorug05G0408400
rosa_samantha	Rh5AG463700 Rh5BG481600 Rh5CG505900 Rh5DG494100
rosa_wichuraiana	Rw5G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	305, 318
AcsI	RAATTY	2 cut(s)	225, 501
AfaI	GTAC	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	209, 359, 500
AluBI	AGCT	7 cut(s)	47, 96, 134, 145, 189, 343, 422
AluI	AGCT	7 cut(s)	47, 96, 134, 145, 189, 343, 422
AlwI	GGATC	2 cut(s)	305, 318
AlwNI	CAGNNNCTG	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	74, 116
ApoI	RAATTY	2 cut(s)	225, 501
AsiGI	ACCGGT	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	208, 468
BamHI	GGATCC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	86, 128
BccI	CCATC	2 cut(s)	166, 387
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	75, 117
BlsI	GCNGC	2 cut(s)	76, 118
BmiI	GGNNCC	2 cut(s)	312, 450
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	237, 444
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 291, 321
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	237, 444
BseGI	GGATG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	86, 128
BshTI	ACCGGT	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	128, 310, 414, 454
Bsp19I	CCATGG	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	312, 450
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	2 cut(s)	305, 318
BsrDI	GCAATG	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	237, 444
BssMI	GATC	4 cut(s)	128, 310, 414, 454
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	278, 319
BstDSI	CCRYGG	2 cut(s)	237, 444
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	4 cut(s)	131, 313, 417, 457
BstMBI	GATC	4 cut(s)	128, 310, 414, 454
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	86, 128
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtgI	CCRYGG	2 cut(s)	237, 444
BtsCI	GGATG	1 cut(s)	379
CaiI	CAGNNNCTG	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	184
CspAI	ACCGGT	1 cut(s)	218
CviAII	CATG	1 cut(s)	445
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	278, 319
DpnI	GATC	4 cut(s)	130, 312, 416, 456
DpnII	GATC	4 cut(s)	128, 310, 414, 454
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	444
EcoRI	GAATTC	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	1 cut(s)	448
FaiI	YATR	6 cut(s)	53, 55, 72, 149, 232, 446
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	75, 117
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	75, 117
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	2 cut(s)	75, 117
GsuI	CTGGAG	1 cut(s)	11
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	1 cut(s)	448
HinfI	GANTC	2 cut(s)	13, 323
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	208, 468
Hpy166II	GTNNAC	3 cut(s)	184, 216, 259
Hpy188I	TCNGA	2 cut(s)	88, 511
Hpy188III	TCNNGA	4 cut(s)	28, 100, 170, 383
Hpy8I	GTNNAC	3 cut(s)	184, 216, 259
HpyAV	CCTTC	2 cut(s)	101, 506
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4V	TGCA	5 cut(s)	4, 40, 74, 116, 164
HpyF3I	CTNAG	2 cut(s)	278, 319
Hsp92II	CATG	1 cut(s)	448
Kzo9I	GATC	4 cut(s)	128, 310, 414, 454
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	9 cut(s)	41, 71, 85, 183, 232, 247, 329, 396, 465
Lsp1109I	GCAGC	2 cut(s)	86, 128
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	423
MalI	GATC	4 cut(s)	130, 312, 416, 456
MboI	GATC	4 cut(s)	128, 310, 414, 454
MboII	GAAGA	4 cut(s)	43, 77, 254, 347
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	2 cut(s)	225, 501
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	3 cut(s)	238, 275, 489
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	4 cut(s)	128, 310, 414, 454
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	2 cut(s)	312, 450
PfeI	GAWTC	1 cut(s)	323
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	76, 118
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	312, 450
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	75, 117
Sau3AI	GATC	4 cut(s)	128, 310, 414, 454
SchI	GAGTC	1 cut(s)	7
SfaNI	GCATC	1 cut(s)	275
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	225, 501
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	457
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	225, 501
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseI	GCWGC	2 cut(s)	74, 116
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	226
XapI	RAATTY	2 cut(s)	225, 501
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.