Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005264

Physical Location & Seq

Genomic Coordinates Reverse (-)

77542960 .. 77547503

Gene Structure 4544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG494100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGAATCGACGGTGGAGATTTGATCGGTTTGTGGCAGCCGTGGTGTTTGTGCTACTGTTTCATCATAATCTGAGCTTCTGTTGGTGTCTCAACAGTGAAGGTTTGGCTTTGTTGAGGTTTAGGGAGAGAGTTATTAGAGACCCTTATGGGGTTTTAGGGAATTGGAATGGTGGTGGTGGTGGTGGTGAAGAAGACGATGATCCTTGTTCTTGGTTTGGAGTTGAGTGCTCATCAGATGGGAAAGTCATCAGCTTGAATTTGAAAGATCTTTGTCTTGGAGGAACATTGGCTCCTGAACTAGGGAAGTTGGTTTACATAAAATCCATAATTTTGCGGAATAATTCTTTTACTGGGAAAATTCCTAGAGAGATTGGAGACTTAATGGAGCTGGAGGTTTTGGACTTGGGATATAATAACTTTAGTGGATCATTTCCATCTGACTTCAGCAACAATCTGTCCCTCACTACCCTTTTACTTGACAATAACCAATTTCTTGGTTGTTTATCCCCTGAAGTCCATGAGCTTAAGATGGTTTCCGAATGCCAAACAGATGAGAGCCAACTAACATATCCTGCTTTCGGGACATCATGCATGAGCAGATCTATCAGCTGGAACACTGCCCAACCTGGAGATACAGCTCACCGCAGGTTGCAGCAGGTGGTAGATGAGCCGGAGGCATCCAGAATTGGAAAAGCTAAAGCAATTGACAGGGTTTCATCATCCATATCGGCTTCACCATCTCCATCACCATTTTCAGCTTCAATGCCACCATCTGCTTCACCATTTTCATCATCACCATCTTCAAATTCCCCTTCACCGTCACCGTCACCATCATCAGATTCTCCTTCACCATCTCCCTCAAGCAGCTTTCTGACCCCTTCACCCTCGCCTTTGATAGCACCAACTCCAGCCTCTCCGGTCCCAGTAAATCCACCAACTATTATTTCGACACCACCAGAGTCTAGTCCATCACAAACTCCATCCCCTGCTTCAATTCCGGGGCAAGGGCTTAAACATAGTTCCAAGTCAAAGAGGCGCATAGTTCTGATTTGTGCAGCCGTTGTTGGAGGTTCTTTATTGATTTTACTTTCAGTCATTGGCATTATGCTTGTCCGAAGCAGTAAAGTGGTTACAGTAAGACCCTGGACAACAGGGTTAAGTGGGCAGTTGCAGAAAGCATTTGTAACAGGTGTACCAAAACTCAACCGATCAGAACTTGTGGCTGCTTGTGAAGATTTCAGTAATATAATTGGATGCTTTTCGGATGGTAACATTTATAAGGGAACTCTTTCAAGTGGGGTTGAAATCGCTGTAACATGTATAACATCAACATCTGCTGGAGACTGGTCTAAACATCTGGAGGCTCAGTTCAGAAAGAAGATAGAAACATTATCCAAGGTGAACCACAAGAACTTTGTAAACCTAATTGGGTATTGTGAAGAAGAGAAACCATTCACAAGAATGATGGTCTTTGAATATGCTCCAAATGGAACACTTTTTGAGCATCTACATAGTGAGTATACAATGAAATTTGTAGTATCTTTCACAGTAGTTTTTGTTCTTACAGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

524

Amino Acids

56.68

Weight (kDa)

6.52

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	30 - 77	8.8e-10	Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr	PF07714	415 - 506	2.9e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	417 - 508	6.6e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58540 AT5G58540 AT5G58540
fragaria_vesca	FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310 FvH4_3g39310
malus_domestica	MD03G1062400.v1.1 MD11G1066000.v1.1
prunus_persica	Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1 Prupe.6G052400_v2.0.a1
pyrus_communis	pycom03g05000 pycom11g05590
rosa_chinensis	RchiOBHm_Chr5g0070741
rosa_laevigata	RLG00000036155
rosa_multiflora	Rmu_sc0002944.1_g000040 Rmu_sc0036080.1_g000001 Rmu_sc0041274.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010450
rosa_rugosa	Rorug05G0408300 Rorug05G0408400
rosa_samantha	Rh5AG463700 Rh5BG481600 Rh5CG505900 Rh5DG494100
rosa_wichuraiana	Rw5G043160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1278
AarI	CACCTGC	1 cut(s)	646
Acc36I	ACCTGC	2 cut(s)	636, 646
AccI	GTMKAC	1 cut(s)	1520
AciI	CCGC	2 cut(s)	334, 643
AclWI	GGATC	2 cut(s)	194, 433
AcsI	RAATTY	4 cut(s)	256, 357, 805, 1529
AcuI	CTGAAG	2 cut(s)	427, 531
AfaI	GTAC	1 cut(s)	1194
AfiI	CCNNNNNNNGG	4 cut(s)	148, 299, 578, 1004
AflII	CTTAAG	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	1316
AgsI	TTSAA	8 cut(s)	256, 262, 762, 804, 993, 1293, 1304, 1475
AjnI	CCWGG	2 cut(s)	625, 1142
AjuI	GAANNNNNNNTTGG	2 cut(s)	928, 960
AloI	GAACNNNNNNTCC	4 cut(s)	274, 306, 1352, 1384
AluBI	AGCT	9 cut(s)	75, 252, 388, 523, 609, 638, 695, 758, 867
AluI	AGCT	9 cut(s)	75, 252, 388, 523, 609, 638, 695, 758, 867
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	4 cut(s)	92, 132, 369, 1335
AlwI	GGATC	2 cut(s)	194, 433
ApeKI	GCWGC	5 cut(s)	35, 652, 864, 1055, 1223
ApoI	RAATTY	4 cut(s)	256, 357, 805, 1529
Asp700I	GAANNNNTTC	2 cut(s)	1288, 1451
AspLEI	GCGC	1 cut(s)	1038
AspS9I	GGNCC	1 cut(s)	919
AsuC2I	CCSGG	1 cut(s)	999
AvaII	GGWCC	1 cut(s)	919
BaeI	ACNNNNGTAYC	2 cut(s)	1176, 1209
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	5 cut(s)	47, 664, 876, 1067, 1210
BceAI	ACGGC	2 cut(s)	23, 1043
BciT130I	CCWGG	2 cut(s)	627, 1144
BcnI	CCSGG	1 cut(s)	999
BcoDI	GTCTC	4 cut(s)	92, 132, 369, 1335
BfaI	CTAG	3 cut(s)	299, 363, 963
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	2 cut(s)	636, 646
BglII	AGATCT	2 cut(s)	265, 599
BisI	GCNGC	5 cut(s)	36, 653, 865, 1056, 1224
BlsI	GCNGC	5 cut(s)	37, 654, 866, 1057, 1225
Bme1390I	CCNGG	3 cut(s)	627, 999, 1144
Bme18I	GGWCC	1 cut(s)	919
BmgT120I	GGNCC	1 cut(s)	919
BmiI	GGNNCC	2 cut(s)	291, 921
BmrFI	CCNGG	3 cut(s)	627, 999, 1144
BmrI	ACTGGG	2 cut(s)	360, 917
BmsI	GCATC	3 cut(s)	686, 1244, 1513
BmuI	ACTGGG	2 cut(s)	360, 917
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	5 cut(s)	410, 648, 891, 1359, 1379
BpuEI	CTTGAG	1 cut(s)	844
BpuMI	CCSGG	1 cut(s)	999
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	39, 998, 1142, 1395
BsaWI	WCCGGW	1 cut(s)	916
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 1352, 1382
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 299, 578, 1004
Bse1I	ACTGG	3 cut(s)	355, 923, 1349
BseBI	CCWGG	2 cut(s)	627, 1144
BseDI	CCNNGG	4 cut(s)	39, 998, 1142, 1395
BseGI	GGATG	5 cut(s)	677, 719, 980, 1259, 1270
BseLI	CCNNNNNNNGG	4 cut(s)	148, 299, 578, 1004
BseMII	CTCAG	2 cut(s)	62, 1379
BseNI	ACTGG	3 cut(s)	355, 923, 1349
BseXI	GCAGC	5 cut(s)	47, 664, 876, 1067, 1210
BsgI	GTGCAG	1 cut(s)	1074
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	671, 917, 998
BslFI	GGGAC	3 cut(s)	442, 595, 905
BslI	CCNNNNNNNGG	4 cut(s)	148, 299, 578, 1004
BsmAI	GTCTC	4 cut(s)	92, 132, 369, 1335
BsmFI	GGGAC	3 cut(s)	442, 595, 905
BsmI	GAATGC	1 cut(s)	545
Bso31I	GGTCTC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
BspACI	CCGC	2 cut(s)	334, 643
BspCNI	CTCAG	2 cut(s)	63, 1378
BspLI	GGNNCC	2 cut(s)	291, 921
BspMI	ACCTGC	2 cut(s)	636, 646
BspPI	GGATC	2 cut(s)	194, 433
BspTI	CTTAAG	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	3 cut(s)	355, 923, 1349
BssECI	CCNNGG	4 cut(s)	39, 998, 1142, 1395
BssMI	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
BssNAI	GTATAC	1 cut(s)	1521
BssT1I	CCWWGG	1 cut(s)	1395
Bst1107I	GTATAC	1 cut(s)	1521
Bst2UI	CCWGG	2 cut(s)	627, 1144
Bst4CI	ACNGT	8 cut(s)	12, 57, 95, 819, 825, 1135, 1549, 1567
Bst6I	CTCTTC	1 cut(s)	1437
BstAFI	CTTAAG	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	71, 1365
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	5 cut(s)	677, 719, 980, 1259, 1270
BstHHI	GCGC	1 cut(s)	1038
BstKTI	GATC	6 cut(s)	25, 202, 268, 428, 602, 1211
BstMAI	GTCTC	4 cut(s)	92, 132, 369, 1335
BstMBI	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
BstNI	CCWGG	2 cut(s)	627, 1144
BstNSI	RCATGY	1 cut(s)	1320
BstSCI	CCNGG	3 cut(s)	625, 997, 1142
BstV1I	GCAGC	5 cut(s)	47, 664, 876, 1067, 1210
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	265, 599
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	2 cut(s)	265, 599
BstZ17I	GTATAC	1 cut(s)	1521
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	677, 719, 980, 1259, 1270
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	100, 615
BveI	ACCTGC	2 cut(s)	636, 646
CfoI	GCGC	1 cut(s)	1038
Cfr13I	GGNCC	1 cut(s)	919
Csp6I	GTAC	1 cut(s)	1193
CviAII	CATG	4 cut(s)	518, 588, 592, 1317
CviQI	GTAC	1 cut(s)	1193
DdeI	CTNAG	2 cut(s)	71, 1365
DpnI	GATC	6 cut(s)	24, 201, 267, 427, 601, 1210
DpnII	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
Eam1104I	CTCTTC	1 cut(s)	1437
EarI	CTCTTC	1 cut(s)	1437
Eco130I	CCWWGG	1 cut(s)	1395
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	919
Eco57I	CTGAAG	2 cut(s)	427, 531
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	625, 1142
EcoT14I	CCWWGG	1 cut(s)	1395
EcoT22I	ATGCAT	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	1395
FaeI	CATG	4 cut(s)	521, 591, 595, 1320
FaqI	GGGAC	3 cut(s)	442, 595, 905
FatI	CATG	4 cut(s)	517, 587, 591, 1316
FblI	GTMKAC	1 cut(s)	1520
Fnu4HI	GCNGC	5 cut(s)	36, 653, 865, 1056, 1224
FokI	GGATG	5 cut(s)	664, 706, 967, 1266, 1277
Fsp4HI	GCNGC	5 cut(s)	36, 653, 865, 1056, 1224
FspBI	CTAG	3 cut(s)	299, 363, 963
GlaI	GCGC	1 cut(s)	1037
GluI	GCNGC	5 cut(s)	36, 653, 865, 1056, 1224
GsuI	CTGGAG	5 cut(s)	410, 648, 891, 1359, 1379
HapII	CCGG	3 cut(s)	671, 917, 998
HhaI	GCGC	1 cut(s)	1038
Hin1II	CATG	4 cut(s)	521, 591, 595, 1320
Hin6I	GCGC	1 cut(s)	1036
HinP1I	GCGC	1 cut(s)	1036
HinfI	GANTC	3 cut(s)	4, 839, 959
HpaII	CCGG	3 cut(s)	671, 917, 998
Hpy166II	GTNNAC	5 cut(s)	313, 1193, 1402, 1420, 1521
Hpy188III	TCNNGA	4 cut(s)	293, 580, 681, 1358
Hpy8I	GTNNAC	5 cut(s)	313, 1193, 1402, 1420, 1521
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	4 cut(s)	92, 822, 855, 888
HpyCH4III	ACNGT	8 cut(s)	12, 57, 95, 819, 825, 1135, 1549, 1567
HpyCH4V	TGCA	4 cut(s)	591, 652, 1055, 1171
HpyF3I	CTNAG	2 cut(s)	71, 1365
Hsp92II	CATG	4 cut(s)	521, 591, 595, 1320
HspAI	GCGC	1 cut(s)	1036
Kzo9I	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
LmnI	GCTCC	3 cut(s)	295, 385, 1486
Lsp1109I	GCAGC	5 cut(s)	47, 664, 876, 1067, 1210
LweI	GCATC	3 cut(s)	686, 1244, 1513
MaeI	CTAG	3 cut(s)	299, 363, 963
MaeIII	GTNAC	6 cut(s)	819, 825, 1129, 1183, 1268, 1312
MalI	GATC	6 cut(s)	24, 201, 267, 427, 601, 1210
MboI	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
MboII	GAAGA	7 cut(s)	200, 203, 792, 1244, 1390, 1451, 1454
MfeI	CAATTG	1 cut(s)	702
MflI	RGATCY	2 cut(s)	265, 599
MhlI	GDGCHC	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	968
MmeI	TCCRAC	1 cut(s)	1045
Mph1103I	ATGCAT	1 cut(s)	593
MroXI	GAANNNNTTC	2 cut(s)	1288, 1451
MseI	TTAA	5 cut(s)	380, 525, 1011, 1157, 1573
MslI	CAYNNNNRTG	1 cut(s)	1460
MspA1I	CMGCKG	1 cut(s)	609
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	3 cut(s)	671, 917, 998
MspR9I	CCNGG	3 cut(s)	627, 999, 1144
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	2 cut(s)	627, 1144
NciI	CCSGG	1 cut(s)	999
NdeII	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
NlaIII	CATG	4 cut(s)	521, 591, 595, 1320
NlaIV	GGNNCC	2 cut(s)	291, 921
NmuCI	GTSAC	2 cut(s)	819, 825
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	1 cut(s)	1320
PaqCI	CACCTGC	1 cut(s)	646
PciI	ACATGT	1 cut(s)	1316
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	2 cut(s)	1288, 1451
PfeI	GAWTC	2 cut(s)	4, 839
PkrI	GCNGC	5 cut(s)	37, 654, 866, 1057, 1225
PleI	GAGTC	1 cut(s)	967
PpsI	GAGTC	1 cut(s)	967
PscI	ACATGT	1 cut(s)	1316
PsiI	TTATAA	1 cut(s)	1278
Psp6I	CCWGG	2 cut(s)	625, 1142
PspGI	CCWGG	2 cut(s)	625, 1142
PspN4I	GGNNCC	2 cut(s)	291, 921
PspPI	GGNCC	1 cut(s)	919
PsrI	GAACNNNNNNTAC	2 cut(s)	1542, 1574
PsuI	RGATCY	2 cut(s)	265, 599
PvuII	CAGCTG	1 cut(s)	609
RsaI	GTAC	1 cut(s)	1194
RsaNI	GTAC	1 cut(s)	1193
RseI	CAYNNNNRTG	1 cut(s)	1460
SaqAI	TTAA	5 cut(s)	380, 525, 1011, 1157, 1573
SatI	GCNGC	5 cut(s)	36, 653, 865, 1056, 1224
Sau3AI	GATC	6 cut(s)	22, 199, 265, 425, 599, 1208
Sau96I	GGNCC	1 cut(s)	919
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	3 cut(s)	627, 999, 1144
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	3 cut(s)	686, 1244, 1513
SinI	GGWCC	1 cut(s)	919
SmiMI	CAYNNNNRTG	1 cut(s)	1460
SmlI	CTYRAG	2 cut(s)	524, 859
SmoI	CTYRAG	2 cut(s)	524, 859
SsiI	CCGC	2 cut(s)	334, 643
SspMI	CTAG	3 cut(s)	299, 363, 963
StyD4I	CCNGG	3 cut(s)	625, 997, 1142
StyI	CCWWGG	1 cut(s)	1395
TaaI	ACNGT	8 cut(s)	12, 57, 95, 819, 825, 1135, 1549, 1567
TaqI	TCGA	2 cut(s)	7, 947
TfiI	GAWTC	2 cut(s)	4, 839
Tru1I	TTAA	5 cut(s)	380, 525, 1011, 1157, 1573
Tru9I	TTAA	5 cut(s)	380, 525, 1011, 1157, 1573
TscAI	CASTG	2 cut(s)	100, 622
TseFI	GTSAC	2 cut(s)	819, 825
TseI	GCWGC	5 cut(s)	35, 652, 864, 1055, 1223
Tsp45I	GTSAC	2 cut(s)	819, 825
TspDTI	ATGAA	5 cut(s)	17, 50, 705, 777, 1541
TspRI	CASTG	2 cut(s)	100, 622
Vha464I	CTTAAG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	919
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	4 cut(s)	256, 357, 805, 1529
XceI	RCATGY	1 cut(s)	1320
XmiI	GTMKAC	1 cut(s)	1520
XmnI	GAANNNNTTC	2 cut(s)	1288, 1451
XspI	CTAG	3 cut(s)	299, 363, 963
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.