RchiOBHm_Chr5g0070741

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
76551914 .. 76555861
3948 bp
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UTR
Exon/CDS
Intron
PRQ34593

Sequence Viewer

Length: 2097 bp
ATGAATCGACGGTGGAGATTTGATCGGTTTGTGGCAGCCGTGGTGTTTGTGCTACTGTTTCATCATAATCTGAGCTTTTGTTGGTGTCTCAACAGTGAAGGTTTGGCTTTGTTGAGGTTTAGGGAGAGAGTGATTAGAGACCCTTACGGGGTTTTAGGGAATTGGAATGGTGGTGGCGGTGGAGAAGATGATGATCCTTGTTCTTGGTTTGGGGTTGAGTGCTCATCAGATGGGAAAGTCATCAGCTTGAATTTGAAAGATCTTTGTCTTGGAGGAACATTGGCTCCTGAACTAGGGAAGCTGGTGTACATAAAGTCCATAATTTTGCGGAATAATTCTTTTACTGGGAAAATTCCTAAAGAGATTGGAGACTTAATGGAGCTGGAGGTTTTGGACTTGGGATATAATAACTTTAGTGGATCATTTCCATCTGATTTCAGCAACAATCTATCCCTCACTACCCTTTTACTTGACAATAACCAATTTCTTGGTTGTTTATCCCCTGAAGTCCATGAGCTTAAGATGGTTTCCGAATGCCAAACAGATGAGAGCCAACTAACAGATCCTGCTTTCGGGACATCATGCATGAGCAGATCTATCAGCTGGAACACTGCCCAACCTGGAGATACAGCTTACCGCAGGTTGCAGCAGGTGGTAGATGAGCCAGAGGCATCCAGAATTGGAAAAGCTAAAGCAACTGACAGGGTTTCATCATCCATATCGGCTTCACCATCTCCATCACCATTTTCAGCTTCAATGCCACCATCTGCTTCACCATTTTCATCATCACCATCTTCAAATTCCCCTTCACCGTCACCATCATCAGATTCTCCTTCACCATCTCCCTCAAGCAGCTTTCTGACCCCTTCACCCTCGCCTTTGATAGCACCAACTCCAGCCTCTCCCGTCCCAGTAAATCCACCAACTATTATTTCGACACCACCAGAGTCTAGTCCATCTCAAACTCCATCCCCTGCTTCAATTCCGGGGCAAGGGCTTAAACATAGTTCCAAGTCAAAGAGGCGCATAGTTCTGATTTGTGCAGCCGTTTTTGGAGGTTCTTTATTGATTTTACTTTCAGTCATTGGCATTATGCTTGTCCGAAGCAGTAAAGTGGTTACAGTAAGACCCTGGACAACAGGGTTAAGTGGGCAGTTGCAGAAAGCATTTGTAACAGGTGTACCAAAACTCAACCGATCAGAACTTGTGGCTGCTTGTGAAGATTTCAGTAATATAATTGGATGCTTTTCGGATGGTAACATTTATAAGGGAACTCTTTCAAGTGGGGTTGAAATCGCTGTAACATGTATAACATCAACATCTGCTGGAGACTGGTCTAAACATCTGGAGGCTCAGTTCAGAAAGAAGATAGAAACATTATCCAAGGTGAACCACAAGAACTTTGTAAACCTAATTGGGTATTGTGAAGAAGAGAAACCATTCACAAGAATGATGGTTTTTGAATATGCTCCAAATGGAACACTTTTTGAGCATCTACATATAAAAGAAGCAGAACACTTGGACTGGGGAATGAGAGTACGAGTAGCCATGGGTATGGCATACTGTCTAGAGTATATGCACCAAATGACTCCACCAATACTCCAGAAGAACTTGCAATCAGCTTCTATATACCTGACCGAAGACTATGCAGCCAAAATATCAGATTTCAGCTTCTGGAATGAAGGAACTGCAGCAAAGACAAGATCAGCTGACAAAGAGCTTATGGAAGTCCCATCTGCAAGTCCAGAAAGCAATGTCTACAGCTTTGGTGTAATATTGTTTGAAATGTTCACCGGTAGAATTCCATACTCCGTGGAAGAGGGTTCTCTTGTGGACTGGGCATCACACTATCTAAGAGGGGAGAAACCATTGGGAGAAATGGTGGATCCTATCTTAGAATCTTACCAAGAAGAAGAGCTGGAAAAACTGTTTCAAGTGGTAACAGATTGTGTCCATCCTGACCCGAAACAAAGACCAAAGATGACAGAGATCACAGCTAGGTTAAAAGAAATCACAGCCATGGAGCCAGATCGAGCCACACCGAAGTTATCACCTCTTTGGTGGGCAGAACTTGAAATTCTTTCAGAAGGAAACTGA

Protein Analysis

698

Amino Acids

76.58

Weight (kDa)

5.38

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 75 8e-10 Leucine rich repeat N-terminal domain
PK_Tyr_Ser-Thr PF07714 412 - 668 5.5e-27 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 413 - 665 1.3e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1266
AarI CACCTGC 1 cut(s) 640
Acc36I ACCTGC 2 cut(s) 630, 640
AccI GTMKAC 1 cut(s) 1758
AciI CCGC 3 cut(s) 177, 328, 637
AclWI GGATC 5 cut(s) 188, 427, 557, 1880, 1893
AcsI RAATTY 5 cut(s) 250, 351, 799, 1800, 2076
AcuI CTGAAG 1 cut(s) 525
AfaI GTAC 3 cut(s) 308, 1182, 1539
AfiI CCNNNNNNNGG 4 cut(s) 148, 293, 572, 992
AflII CTTAAG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 1304
AgeI ACCGGT 1 cut(s) 1793
AjnI CCWGG 2 cut(s) 619, 1130
AjuI GAANNNNNNNTTGG 2 cut(s) 916, 948
AloI GAACNNNNNNTCC 4 cut(s) 268, 300, 1340, 1372
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 4 cut(s) 92, 132, 363, 1323
AlwI GGATC 5 cut(s) 188, 427, 557, 1880, 1893
AlwNI CAGNNNCTG 2 cut(s) 566, 1674
ApeKI GCWGC 7 cut(s) 35, 646, 852, 1043, 1211, 1649, 1691
ApoI RAATTY 5 cut(s) 250, 351, 799, 1800, 2076
AsiGI ACCGGT 1 cut(s) 1793
Asp700I GAANNNNTTC 2 cut(s) 1276, 1439
AspLEI GCGC 1 cut(s) 1026
AsuC2I CCSGG 1 cut(s) 987
BaeI ACNNNNGTAYC 2 cut(s) 1164, 1197
BamHI GGATCC 1 cut(s) 1885
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BbsI GAAGAC 1 cut(s) 1647
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 7 cut(s) 47, 658, 864, 1055, 1198, 1661, 1703
BceAI ACGGC 2 cut(s) 23, 1031
BcgI CGANNNNNNTGC 2 cut(s) 1628, 1662
BciT130I CCWGG 2 cut(s) 621, 1132
BcnI CCSGG 1 cut(s) 987
BcoDI GTCTC 4 cut(s) 92, 132, 363, 1323
BfaI CTAG 4 cut(s) 293, 951, 1568, 1998
BfmI CTRYAG 2 cut(s) 1689, 1759
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 2 cut(s) 630, 640
BglII AGATCT 2 cut(s) 259, 593
BisI GCNGC 7 cut(s) 36, 647, 853, 1044, 1212, 1650, 1692
BlsI GCNGC 7 cut(s) 37, 648, 854, 1045, 1213, 1651, 1693
Bme1390I CCNGG 3 cut(s) 621, 987, 1132
BmiI GGNNCC 3 cut(s) 285, 1887, 2025
BmrFI CCNGG 3 cut(s) 621, 987, 1132
BmrI ACTGGG 4 cut(s) 354, 905, 1534, 1846
BmsI GCATC 4 cut(s) 680, 1232, 1501, 1850
BmuI ACTGGG 4 cut(s) 354, 905, 1534, 1846
BpiI GAAGAC 1 cut(s) 1647
BpmI CTGGAG 6 cut(s) 404, 642, 879, 1347, 1367, 1586
BpuEI CTTGAG 1 cut(s) 832
BpuMI CCSGG 1 cut(s) 987
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 7 cut(s) 39, 986, 1130, 1383, 1548, 1812, 2019
BsaWI WCCGGW 1 cut(s) 1793
BsaXI ACNNNNNCTCC 8 cut(s) 268, 298, 1340, 1370, 1584, 1614, 1866, 1896
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 293, 572, 992
Bse118I RCCGGY 1 cut(s) 1793
Bse1I ACTGG 5 cut(s) 349, 911, 1337, 1529, 1841
Bse3DI GCAATG 1 cut(s) 1759
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 621, 1132
BseDI CCNNGG 7 cut(s) 39, 986, 1130, 1383, 1548, 1812, 2019
BseGI GGATG 6 cut(s) 671, 713, 968, 1247, 1258, 1954
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 4 cut(s) 148, 293, 572, 992
BseMI GCAATG 1 cut(s) 1759
BseMII CTCAG 2 cut(s) 62, 1367
BseNI ACTGG 5 cut(s) 349, 911, 1337, 1529, 1841
BseXI GCAGC 7 cut(s) 47, 658, 864, 1055, 1198, 1661, 1703
BsgI GTGCAG 1 cut(s) 1062
BshTI ACCGGT 1 cut(s) 1793
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 986, 1794
BslFI GGGAC 3 cut(s) 589, 893, 1715
BslI CCNNNNNNNGG 4 cut(s) 148, 293, 572, 992
BsmAI GTCTC 4 cut(s) 92, 132, 363, 1323
BsmFI GGGAC 3 cut(s) 589, 893, 1715
BsmI GAATGC 1 cut(s) 539
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 224
Bsp1407I TGTACA 1 cut(s) 306
Bsp19I CCATGG 2 cut(s) 1548, 2019
BspACI CCGC 3 cut(s) 177, 328, 637
BspCNI CTCAG 2 cut(s) 63, 1366
BspLI GGNNCC 3 cut(s) 285, 1887, 2025
BspMAI CTGCAG 1 cut(s) 1693
BspMI ACCTGC 2 cut(s) 630, 640
BspPI GGATC 5 cut(s) 188, 427, 557, 1880, 1893
BspQI GCTCTTC 1 cut(s) 1908
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 1759
BsrFI RCCGGY 1 cut(s) 1793
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 5 cut(s) 349, 911, 1337, 1529, 1841
BssAI RCCGGY 1 cut(s) 1793
BssECI CCNNGG 7 cut(s) 39, 986, 1130, 1383, 1548, 1812, 2019
BssT1I CCWWGG 3 cut(s) 1383, 1548, 2019
Bst2UI CCWGG 2 cut(s) 621, 1132
Bst4CI ACNGT 7 cut(s) 12, 57, 95, 813, 1123, 1565, 1929
Bst6I CTCTTC 3 cut(s) 1425, 1812, 1908
BstAFI CTTAAG 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 71, 1353, 1853, 1894
BstDSI CCRYGG 4 cut(s) 39, 1548, 1812, 2019
BstENI CCTNNNNNAGG 1 cut(s) 291
BstF5I GGATG 6 cut(s) 671, 713, 968, 1247, 1258, 1954
BstHHI GCGC 1 cut(s) 1026
BstMAI GTCTC 4 cut(s) 92, 132, 363, 1323
BstNI CCWGG 2 cut(s) 621, 1132
BstNSI RCATGY 1 cut(s) 1308
BstSCI CCNGG 3 cut(s) 619, 985, 1130
BstSFI CTRYAG 2 cut(s) 1689, 1759
BstV1I GCAGC 7 cut(s) 47, 658, 864, 1055, 1198, 1661, 1703
BstV2I GAAGAC 1 cut(s) 1647
BstX2I RGATCY 4 cut(s) 259, 562, 593, 1885
BstXI CCANNNNNNTGG 2 cut(s) 488, 1555
BstYI RGATCY 4 cut(s) 259, 562, 593, 1885
BtgI CCRYGG 4 cut(s) 39, 1548, 1812, 2019
BtsCI GGATG 6 cut(s) 671, 713, 968, 1247, 1258, 1954
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 100, 609
BveI ACCTGC 2 cut(s) 630, 640
CaiI CAGNNNCTG 2 cut(s) 566, 1674
CfoI GCGC 1 cut(s) 1026
Cfr10I RCCGGY 1 cut(s) 1793
Csp6I GTAC 3 cut(s) 307, 1181, 1538
CspAI ACCGGT 1 cut(s) 1793
CviAII CATG 6 cut(s) 512, 582, 586, 1305, 1549, 2020
CviQI GTAC 3 cut(s) 307, 1181, 1538
DdeI CTNAG 4 cut(s) 71, 1353, 1853, 1894
Eam1104I CTCTTC 3 cut(s) 1425, 1812, 1908
EarI CTCTTC 3 cut(s) 1425, 1812, 1908
Eco130I CCWWGG 3 cut(s) 1383, 1548, 2019
Eco31I GGTCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 525
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 1800
EcoRII CCWGG 2 cut(s) 619, 1130
EcoT14I CCWWGG 3 cut(s) 1383, 1548, 2019
EcoT22I ATGCAT 1 cut(s) 587
ErhI CCWWGG 3 cut(s) 1383, 1548, 2019
FaeI CATG 6 cut(s) 515, 585, 589, 1308, 1552, 2023
FaqI GGGAC 3 cut(s) 589, 893, 1715
FatI CATG 6 cut(s) 511, 581, 585, 1304, 1548, 2019
FblI GTMKAC 1 cut(s) 1758
Fnu4HI GCNGC 7 cut(s) 36, 647, 853, 1044, 1212, 1650, 1692
FokI GGATG 6 cut(s) 658, 700, 955, 1254, 1265, 1941
Fsp4HI GCNGC 7 cut(s) 36, 647, 853, 1044, 1212, 1650, 1692
FspBI CTAG 4 cut(s) 293, 951, 1568, 1998
GlaI GCGC 1 cut(s) 1025
GluI GCNGC 7 cut(s) 36, 647, 853, 1044, 1212, 1650, 1692
GsuI CTGGAG 6 cut(s) 404, 642, 879, 1347, 1367, 1586
HapII CCGG 2 cut(s) 986, 1794
HhaI GCGC 1 cut(s) 1026
Hin1II CATG 6 cut(s) 515, 585, 589, 1308, 1552, 2023
Hin6I GCGC 1 cut(s) 1024
HinP1I GCGC 1 cut(s) 1024
HinfI GANTC 5 cut(s) 4, 827, 947, 1588, 1898
HpaII CCGG 2 cut(s) 986, 1794
Hpy166II GTNNAC 7 cut(s) 307, 1181, 1390, 1408, 1759, 1791, 1834
Hpy188III TCNNGA 9 cut(s) 287, 574, 675, 1346, 1568, 1603, 1675, 1745, 1958
Hpy8I GTNNAC 7 cut(s) 307, 1181, 1390, 1408, 1759, 1791, 1834
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 6 cut(s) 92, 816, 843, 876, 1676, 2081
HpyCH4III ACNGT 7 cut(s) 12, 57, 95, 813, 1123, 1565, 1929
HpyCH4V TGCA 9 cut(s) 585, 646, 1043, 1159, 1579, 1615, 1649, 1691, 1739
HpyF3I CTNAG 4 cut(s) 71, 1353, 1853, 1894
Hsp92II CATG 6 cut(s) 515, 585, 589, 1308, 1552, 2023
HspAI GCGC 1 cut(s) 1024
LguI GCTCTTC 1 cut(s) 1908
LmnI GCTCC 4 cut(s) 289, 379, 1474, 2023
Lsp1109I GCAGC 7 cut(s) 47, 658, 864, 1055, 1198, 1661, 1703
LweI GCATC 4 cut(s) 680, 1232, 1501, 1850
MaeI CTAG 4 cut(s) 293, 951, 1568, 1998
MaeIII GTNAC 6 cut(s) 813, 1117, 1171, 1256, 1300, 1939
MflI RGATCY 4 cut(s) 259, 562, 593, 1885
MhlI GDGCHC 1 cut(s) 224
MlyI GAGTC 2 cut(s) 956, 1582
Mph1103I ATGCAT 1 cut(s) 587
MroXI GAANNNNTTC 2 cut(s) 1276, 1439
MseI TTAA 5 cut(s) 374, 519, 999, 1145, 2003
MslI CAYNNNNRTG 3 cut(s) 1448, 1553, 2018
MspA1I CMGCKG 2 cut(s) 603, 1709
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 2 cut(s) 986, 1794
MspR9I CCNGG 3 cut(s) 621, 987, 1132
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 2 cut(s) 621, 1132
NciI CCSGG 1 cut(s) 987
NcoI CCATGG 2 cut(s) 1548, 2019
NlaIII CATG 6 cut(s) 515, 585, 589, 1308, 1552, 2023
NlaIV GGNNCC 3 cut(s) 285, 1887, 2025
NmuCI GTSAC 1 cut(s) 813
NsiI ATGCAT 1 cut(s) 587
NspI RCATGY 1 cut(s) 1308
PaqCI CACCTGC 1 cut(s) 640
PciI ACATGT 1 cut(s) 1304
PciSI GCTCTTC 1 cut(s) 1908
PctI GAATGC 1 cut(s) 539
PdmI GAANNNNTTC 2 cut(s) 1276, 1439
PfeI GAWTC 3 cut(s) 4, 827, 1898
PinAI ACCGGT 1 cut(s) 1793
PkrI GCNGC 7 cut(s) 37, 648, 854, 1045, 1213, 1651, 1693
PleI GAGTC 2 cut(s) 955, 1582
PpsI GAGTC 2 cut(s) 955, 1582
PscI ACATGT 1 cut(s) 1304
PsiI TTATAA 1 cut(s) 1266
Psp6I CCWGG 2 cut(s) 619, 1130
PspGI CCWGG 2 cut(s) 619, 1130
PspN4I GGNNCC 3 cut(s) 285, 1887, 2025
PstI CTGCAG 1 cut(s) 1693
PstNI CAGNNNCTG 2 cut(s) 566, 1674
PsuI RGATCY 4 cut(s) 259, 562, 593, 1885
PvuII CAGCTG 2 cut(s) 603, 1709
RsaI GTAC 3 cut(s) 308, 1182, 1539
RsaNI GTAC 3 cut(s) 307, 1181, 1538
RseI CAYNNNNRTG 3 cut(s) 1448, 1553, 2018
SapI GCTCTTC 1 cut(s) 1908
SaqAI TTAA 5 cut(s) 374, 519, 999, 1145, 2003
SatI GCNGC 7 cut(s) 36, 647, 853, 1044, 1212, 1650, 1692
SchI GAGTC 2 cut(s) 956, 1582
ScrFI CCNGG 3 cut(s) 621, 987, 1132
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 4 cut(s) 680, 1232, 1501, 1850
SfcI CTRYAG 2 cut(s) 1689, 1759
SmiMI CAYNNNNRTG 3 cut(s) 1448, 1553, 2018
SmlI CTYRAG 2 cut(s) 518, 847
SmoI CTYRAG 2 cut(s) 518, 847
SsiI CCGC 3 cut(s) 177, 328, 637
SspI AATATT 1 cut(s) 1776
SspMI CTAG 4 cut(s) 293, 951, 1568, 1998
StyD4I CCNGG 3 cut(s) 619, 985, 1130
StyI CCWWGG 3 cut(s) 1383, 1548, 2019
TaaI ACNGT 7 cut(s) 12, 57, 95, 813, 1123, 1565, 1929
TaqI TCGA 3 cut(s) 7, 935, 2032
TaqII GACCGA 1 cut(s) 1652
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 3 cut(s) 4, 827, 1898
Tru1I TTAA 5 cut(s) 374, 519, 999, 1145, 2003
Tru9I TTAA 5 cut(s) 374, 519, 999, 1145, 2003
TscAI CASTG 2 cut(s) 100, 616
TseFI GTSAC 1 cut(s) 813
TseI GCWGC 7 cut(s) 35, 646, 852, 1043, 1211, 1649, 1691
Tsp45I GTSAC 1 cut(s) 813
TspDTI ATGAA 5 cut(s) 17, 50, 699, 771, 1695
TspGWI ACGGA 1 cut(s) 1801
TspRI CASTG 2 cut(s) 100, 616
Vha464I CTTAAG 1 cut(s) 518
XagI CCTNNNNNAGG 1 cut(s) 291
XapI RAATTY 5 cut(s) 250, 351, 799, 1800, 2076
XbaI TCTAGA 1 cut(s) 1567
XceI RCATGY 1 cut(s) 1308
XmiI GTMKAC 1 cut(s) 1758
XmnI GAANNNNTTC 2 cut(s) 1276, 1439
XspI CTAG 4 cut(s) 293, 951, 1568, 1998
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.