Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010972

Physical Location & Seq

Genomic Coordinates Forward (+)

33717524 .. 33721945

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGATGGGCTCCGAGAACCACCAGGACCATCAGTACGGTGGCTCGAAAGACGAGATGGAGAGTCTCGTCCTCGACGACACGCCGTTGAACAACGGCGGTGCCACTAAATCGTCGTCGTATGCCAATTACCGCAGCGCCATGTCGTCGCTCTCCGACACGCACCACCCGCTCGCGTCCCCAATCGACGCCGCTACTGCGGCGGATTCCGATCCCCTTCTGACGGCTCCACTGCCGTTCCGAGATCTCCGAAACCCTAACGGCGCCGACTCGTACGTCGACCAGCCGTCCTACGCCGACGTGGTGTTCAGTCCGTTGGACGGCGAGACGATCGGCGAAATCAACGGCGTCGAGAGCCCGAGCAAGAGCTCCGACCATTCCAGCTCGTACTCGCTTTCGCGATCTCCGTCGTCGAGCTCGGACTATATCAAAATCACGGTGTCGAATCCTCAGAAGGAGCAGGAGTCCACGAATTCTGTTATTCCCGGAGGAAACACTTACGTCACGTATCTGATCACGACGAGGACGAACATTCCCGAGTTCGGCGGATCGGAATTCGGCGTCCGGCGGCGGTTTCGGGACGTGGTGACGTTATCGGACCGGCTGGCGGAGGCGTACAGAGGGTTCTTCATTCCGCCGCGGCCGGATAAGAACGTTGTGGAGAGCCAGGTGATGCAGAAGCAAGAGTTTGTTGAGCAGAGAAGAGTGGCATTGGAGAAGTACTTGAGGCGGTTAGCGGCTCACCCTGTGATTAAGAAGAGTGATGAGTTGAAGGTGTTTCTGCAAGTTCAGGGGAGGTTTCCGCTGCCGATGACTACTGATGTTGCTTCTAGAATGCTGGATGGGGCGGCTAAGCTGCCGAAGCAGTTGTTTGGTGAGAGTGCCCCGGTGGCTCCACACGAGGTGGTTCAGCCGGCGAAAGGTGGGAGGGACTTGCTGAGGCTGTTTAAGGAGCTGAAGCAGTCAGTGGCTAATGACTGGGGAGGTTCGAAGCCGCTGGTGGGGGAGGAGGATAAGGAGTTTATGGAAAAGAAAGACCACATGCAGGAGCTCGAGCAACAACTCAGCAATGCATCACAGCAGGCTGAATCACTTGTAAAAGCTCAACAAGACATGGGAGAGACTATGGGAGAGTTAGGACTAGCATTTATAAAACTGACCAAATTTGAGAATGAGGAGGCCTTGTTCAACTCTCAAAGAATACGAGCTGCTGACATGAAGAATGTAGCAACTGCTGCTGTAAAAGCCAGCCGATACTATCGAGAATTGAACTCTCAGACTGTCAAACATTTGGATACATTCCATGAGTATCTTGGGCTAATGTTATCCGTCAATGGTGCATTCTCGGATCGATCTAGTGCTTTATTGACAGTTCAGACTCTTCTATCAGAATTGGATTCATTGCAGTCAAGGGCTGAAAGACTTGAAGTTGCATCAAACAAAATATTTGGTGGTGACAAATCAAGGACTCGCAAACTAGAGGAGTTAAATGAAACCATAAGAGCTACCGAGGATGCGAAGAATGTAGCAATCAGAGAATATGAAAGAATTAAGGAAAACAACAGAAGTGAACTTGAAAGGCTTGACAGCGAGAGGCATGCCGACTTCTTGAACATGTTGAAGGGGTTTGTGCATAATCAGGTGGGATATGCCGAGAAAATAGCAAACGTGTGGTCCAAGGTCGCCGAGGAGACTAGTTCGTACGCAAGAGAGAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

573

Amino Acids

63.74

Weight (kDa)

5.52

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	179 - 262	4.1e-18	PX domain
Vps5	PF09325	330 - 562	1.9e-20	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07120 AT5G07120 AT5G07120 AT5G58440
fragaria_vesca	FvH4_3g39770
malus_domestica	MD03G1056600.v1.1 MD11G1058400.v1.1
prunus_persica	Prupe.6G048200_v2.0.a1
pyrus_communis	pycom11g04840
rosa_chinensis	RchiOBHm_Chr5g0071651
rosa_laevigata	RLG00000036238
rosa_multiflora	Rmu_sc0002060.1_g000020 Rmu_sc0005745.1_g000035 Rmu_sc0006567.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009520
rosa_rugosa	Rorug05G0414000
rosa_samantha	Rh5BG489500 Rh5CG513300 Rh5DG500300
rosa_wichuraiana	Rw5G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1148
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	98, 260
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	3 cut(s)	173, 397, 637
AclI	AACGTT	1 cut(s)	651
AclWI	GGATC	3 cut(s)	203, 553, 1353
AcoI	YGGCCR	1 cut(s)	638
AcsI	RAATTY	3 cut(s)	469, 551, 1160
AcuI	CTGAAG	1 cut(s)	974
AcyI	GRCGYC	4 cut(s)	186, 261, 345, 558
AdeI	CACNNNGTG	2 cut(s)	745, 901
AfaI	GTAC	6 cut(s)	35, 272, 386, 614, 719, 1700
AfiI	CCNNNNNNNGG	7 cut(s)	220, 317, 539, 604, 917, 998, 1042
AflIII	ACRYGT	2 cut(s)	1611, 1665
AgsI	TTSAA	8 cut(s)	88, 769, 1186, 1267, 1424, 1574, 1609, 1618
AhdI	GACNNNNNGTC	1 cut(s)	283
AhlI	ACTAGT	1 cut(s)	1691
AjiI	CACGTC	2 cut(s)	298, 580
AjnI	CCWGG	2 cut(s)	21, 663
AloI	GAACNNNNNNTCC	2 cut(s)	1166, 1198
Alw21I	GWGCWC	4 cut(s)	368, 416, 1050, 1715
Alw26I	GTCTC	4 cut(s)	68, 317, 1112, 1682
AlwI	GGATC	3 cut(s)	203, 553, 1353
Ama87I	CYCGRG	3 cut(s)	355, 533, 1049
AoxI	GGCC	2 cut(s)	638, 1176
ApeKI	GCWGC	5 cut(s)	132, 802, 853, 1205, 1232
ApoI	RAATTY	3 cut(s)	469, 551, 1160
ArsI	GACNNNNNNTTYG	2 cut(s)	1655, 1687
AspLEI	GCGC	2 cut(s)	137, 263
AspS9I	GGNCC	3 cut(s)	25, 595, 1671
AsuC2I	CCSGG	2 cut(s)	483, 884
AsuHPI	GGTGA	5 cut(s)	595, 679, 731, 884, 1463
AsuII	TTCGAA	1 cut(s)	986
AvaI	CYCGRG	3 cut(s)	355, 533, 1049
AvaII	GGWCC	3 cut(s)	25, 595, 1671
BaeGI	GKGCMC	1 cut(s)	883
BanI	GGYRCC	2 cut(s)	98, 260
BanII	GRGCYC	6 cut(s)	11, 356, 368, 416, 1050, 1715
BauI	CACGAG	1 cut(s)	896
Bbv12I	GWGCWC	4 cut(s)	368, 416, 1050, 1715
BbvCI	CCTCAGC	1 cut(s)	935
BbvI	GCAGC	5 cut(s)	144, 789, 840, 1192, 1219
BccI	CCATC	3 cut(s)	36, 49, 833
BceAI	ACGGC	8 cut(s)	67, 109, 217, 237, 268, 274, 334, 358
BcgI	CGANNNNNNTGC	2 cut(s)	1577, 1611
BciT130I	CCWGG	2 cut(s)	23, 665
BciVI	GTATCC	1 cut(s)	1285
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	2 cut(s)	483, 884
BcoDI	GTCTC	4 cut(s)	68, 317, 1112, 1682
BcuI	ACTAGT	1 cut(s)	1691
BfaI	CTAG	5 cut(s)	828, 1139, 1353, 1475, 1692
BfoI	RGCGCY	2 cut(s)	138, 264
BfuI	GTATCC	1 cut(s)	1285
BglI	GCCNNNNNGGC	1 cut(s)	887
BglII	AGATCT	1 cut(s)	241
BlpI	GCTNAGC	1 cut(s)	849
BmcAI	AGTACT	1 cut(s)	719
Bme1390I	CCNGG	4 cut(s)	23, 483, 665, 884
Bme18I	GGWCC	3 cut(s)	25, 595, 1671
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	3 cut(s)	355, 533, 1049
BmgBI	CACGTC	2 cut(s)	298, 580
BmgT120I	GGNCC	3 cut(s)	25, 595, 1671
BmiI	GGNNCC	5 cut(s)	10, 100, 225, 262, 891
BmrFI	CCNGG	4 cut(s)	23, 483, 665, 884
BmrI	ACTGGG	1 cut(s)	985
BmsI	GCATC	4 cut(s)	660, 1079, 1439, 1501
BmuI	ACTGGG	1 cut(s)	985
Bpu10I	CCTNAGC	1 cut(s)	935
Bpu1102I	GCTNAGC	1 cut(s)	849
Bpu14I	TTCGAA	1 cut(s)	986
BpuEI	CTTGAG	1 cut(s)	742
BpuMI	CCSGG	2 cut(s)	483, 884
Bsa29I	ATCGAT	1 cut(s)	1348
BsaAI	YACGTR	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	4 cut(s)	186, 261, 345, 558
BsaJI	CCNNGG	5 cut(s)	635, 882, 1506, 1674, 1683
BsaXI	ACNNNNNCTCC	4 cut(s)	446, 476, 1166, 1196
Bsc4I	CCNNNNNNNGG	7 cut(s)	220, 317, 539, 604, 917, 998, 1042
Bse118I	RCCGGY	2 cut(s)	597, 910
Bse1I	ACTGG	1 cut(s)	980
Bse3DI	GCAATG	2 cut(s)	1072, 1397
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	23, 665
BseCI	ATCGAT	1 cut(s)	1348
BseDI	CCNNGG	5 cut(s)	635, 882, 1506, 1674, 1683
BseGI	GGATG	2 cut(s)	844, 1516
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	7 cut(s)	220, 317, 539, 604, 917, 998, 1042
BseMI	GCAATG	2 cut(s)	1072, 1397
BseMII	CTCAG	4 cut(s)	461, 926, 1075, 1286
BseNI	ACTGG	1 cut(s)	980
BseRI	GAGGAG	4 cut(s)	1019, 1187, 1493, 1700
BseSI	GKGCMC	1 cut(s)	883
BseX3I	CGGCCG	1 cut(s)	638
BseXI	GCAGC	5 cut(s)	144, 789, 840, 1192, 1219
Bsh1236I	CGCG	3 cut(s)	173, 397, 637
Bsh1285I	CGRYCG	2 cut(s)	330, 641
BshFI	GGCC	2 cut(s)	640, 1178
BshNI	GGYRCC	2 cut(s)	98, 260
BshVI	ATCGAT	1 cut(s)	1348
BsiEI	CGRYCG	2 cut(s)	330, 641
BsiHKAI	GWGCWC	4 cut(s)	368, 416, 1050, 1715
BsiHKCI	CYCGRG	3 cut(s)	355, 533, 1049
BsiSI	CCGG	6 cut(s)	483, 562, 598, 641, 884, 911
BsiWI	CGTACG	2 cut(s)	270, 1698
BslFI	GGGAC	3 cut(s)	160, 590, 941
BslI	CCNNNNNNNGG	7 cut(s)	220, 317, 539, 604, 917, 998, 1042
BsmAI	GTCTC	4 cut(s)	68, 317, 1112, 1682
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	3 cut(s)	160, 590, 941
BsmI	GAATGC	2 cut(s)	837, 1337
BsnI	GGCC	2 cut(s)	640, 1178
BsoBI	CYCGRG	3 cut(s)	355, 533, 1049
Bsp119I	TTCGAA	1 cut(s)	986
Bsp1286I	GDGCHC	7 cut(s)	11, 356, 368, 416, 883, 1050, 1715
Bsp143I	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
Bsp1720I	GCTNAGC	1 cut(s)	849
Bsp68I	TCGCGA	1 cut(s)	397
BspANI	GGCC	2 cut(s)	640, 1178
BspCNI	CTCAG	4 cut(s)	460, 927, 1074, 1285
BspDI	ATCGAT	1 cut(s)	1348
BspFNI	CGCG	3 cut(s)	173, 397, 637
BspLI	GGNNCC	5 cut(s)	10, 100, 225, 262, 891
BspPI	GGATC	3 cut(s)	203, 553, 1353
BspT104I	TTCGAA	1 cut(s)	986
BspT107I	GGYRCC	2 cut(s)	98, 260
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	1072, 1397
BsrFI	RCCGGY	2 cut(s)	597, 910
BsrI	ACTGG	1 cut(s)	980
BssAI	RCCGGY	2 cut(s)	597, 910
BssECI	CCNNGG	5 cut(s)	635, 882, 1506, 1674, 1683
BssMI	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
BssNI	GRCGYC	4 cut(s)	186, 261, 345, 558
BssSI	CACGAG	1 cut(s)	896
BssT1I	CCWWGG	1 cut(s)	1674
Bst2BI	CACGAG	1 cut(s)	896
Bst2UI	CCWGG	2 cut(s)	23, 665
Bst4CI	ACNGT	4 cut(s)	38, 436, 1279, 1369
Bst6I	CTCTTC	3 cut(s)	694, 749, 1383
BstACI	GRCGYC	4 cut(s)	186, 261, 345, 558
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstBAI	YACGTR	1 cut(s)	504
BstBI	TTCGAA	1 cut(s)	986
BstC8I	GCNNGC	6 cut(s)	171, 603, 912, 1080, 1246, 1596
BstDEI	CTNAG	5 cut(s)	447, 849, 935, 1061, 1272
BstDSI	CCRYGG	1 cut(s)	635
BstF5I	GGATG	2 cut(s)	844, 1516
BstFNI	CGCG	3 cut(s)	173, 397, 637
BstH2I	RGCGCY	2 cut(s)	138, 264
BstHHI	GCGC	2 cut(s)	137, 263
BstKTI	GATC	8 cut(s)	211, 244, 330, 401, 513, 548, 1348, 1352
BstMAI	GTCTC	4 cut(s)	68, 317, 1112, 1682
BstMBI	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
BstMCI	CGRYCG	2 cut(s)	330, 641
BstMWI	GCNNNNNNNGC	8 cut(s)	166, 194, 197, 351, 859, 887, 1232, 1241
BstNI	CCWGG	2 cut(s)	23, 665
BstNSI	RCATGY	3 cut(s)	1042, 1598, 1615
BstSCI	CCNGG	4 cut(s)	21, 481, 663, 882
BstSLI	GKGCMC	1 cut(s)	883
BstUI	CGCG	3 cut(s)	173, 397, 637
BstV1I	GCAGC	5 cut(s)	144, 789, 840, 1192, 1219
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	638
Bsu15I	ATCGAT	1 cut(s)	1348
BsuI	GTATCC	1 cut(s)	1285
BsuRI	GGCC	2 cut(s)	640, 1178
BsuTUI	ATCGAT	1 cut(s)	1348
BtgI	CCRYGG	1 cut(s)	635
BtrI	CACGTC	2 cut(s)	298, 580
BtsCI	GGATG	2 cut(s)	844, 1516
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	227, 969
BtuMI	TCGCGA	1 cut(s)	397
Cac8I	GCNNGC	6 cut(s)	171, 603, 912, 1080, 1246, 1596
CfoI	GCGC	2 cut(s)	137, 263
Cfr10I	RCCGGY	2 cut(s)	597, 910
Cfr13I	GGNCC	3 cut(s)	25, 595, 1671
Cfr42I	CCGCGG	1 cut(s)	638
ClaI	ATCGAT	1 cut(s)	1348
CpoI	CGGWCCG	1 cut(s)	595
CseI	GACGC	4 cut(s)	162, 194, 334, 547
Csp6I	GTAC	6 cut(s)	34, 271, 385, 613, 718, 1699
CspI	CGGWCCG	1 cut(s)	595
CviAII	CATG	7 cut(s)	139, 1039, 1111, 1213, 1301, 1595, 1612
CviQI	GTAC	6 cut(s)	34, 271, 385, 613, 718, 1699
DdeI	CTNAG	5 cut(s)	447, 849, 935, 1061, 1272
DinI	GGCGCC	1 cut(s)	262
DpnI	GATC	8 cut(s)	210, 243, 329, 400, 512, 547, 1347, 1351
DpnII	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
DraIII	CACNNNGTG	2 cut(s)	745, 901
DrdI	GACNNNNNNGTC	1 cut(s)	272
DriI	GACNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	638
EagI	CGGCCG	1 cut(s)	638
Eam1104I	CTCTTC	3 cut(s)	694, 749, 1383
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	3 cut(s)	694, 749, 1383
EciI	GGCGGA	4 cut(s)	215, 558, 620, 621
Ecl136II	GAGCTC	4 cut(s)	366, 414, 1048, 1713
EclXI	CGGCCG	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	1674
Eco147I	AGGCCT	1 cut(s)	1178
Eco24I	GRGCYC	6 cut(s)	11, 356, 368, 416, 1050, 1715
Eco47I	GGWCC	3 cut(s)	25, 595, 1671
Eco52I	CGGCCG	1 cut(s)	638
Eco53kI	GAGCTC	4 cut(s)	366, 414, 1048, 1713
Eco57I	CTGAAG	1 cut(s)	974
Eco88I	CYCGRG	3 cut(s)	355, 533, 1049
EcoICRI	GAGCTC	4 cut(s)	366, 414, 1048, 1713
EcoRI	GAATTC	2 cut(s)	469, 551
EcoRII	CCWGG	2 cut(s)	21, 663
EcoT14I	CCWWGG	1 cut(s)	1674
EcoT22I	ATGCAT	1 cut(s)	1072
EcoT38I	GRGCYC	6 cut(s)	11, 356, 368, 416, 1050, 1715
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	1674
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	7 cut(s)	142, 1042, 1114, 1216, 1304, 1598, 1615
FaqI	GGGAC	3 cut(s)	160, 590, 941
FatI	CATG	7 cut(s)	138, 1038, 1110, 1212, 1300, 1594, 1611
FauI	CCCGC	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	276
FokI	GGATG	2 cut(s)	851, 1523
FriOI	GRGCYC	6 cut(s)	11, 356, 368, 416, 1050, 1715
FspBI	CTAG	5 cut(s)	828, 1139, 1353, 1475, 1692
GlaI	GCGC	2 cut(s)	136, 262
HaeII	RGCGCY	2 cut(s)	138, 264
HaeIII	GGCC	2 cut(s)	640, 1178
HapII	CCGG	6 cut(s)	483, 562, 598, 641, 884, 911
HgaI	GACGC	4 cut(s)	162, 194, 334, 547
HhaI	GCGC	2 cut(s)	137, 263
Hin1I	GRCGYC	4 cut(s)	186, 261, 345, 558
Hin1II	CATG	7 cut(s)	142, 1042, 1114, 1216, 1304, 1598, 1615
Hin6I	GCGC	2 cut(s)	135, 261
HinP1I	GCGC	2 cut(s)	135, 261
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	9 cut(s)	61, 203, 266, 442, 461, 1085, 1375, 1394, 1465
HpaII	CCGG	6 cut(s)	483, 562, 598, 641, 884, 911
HphI	GGTGA	5 cut(s)	595, 679, 731, 884, 1463
Hpy166II	GTNNAC	3 cut(s)	277, 465, 1568
Hpy188III	TCNNGA	9 cut(s)	349, 396, 514, 533, 575, 828, 1259, 1606, 1716
Hpy8I	GTNNAC	3 cut(s)	277, 465, 1568
HpyAV	CCTTC	4 cut(s)	224, 445, 763, 1612
HpyCH4III	ACNGT	4 cut(s)	38, 436, 1279, 1369
HpyCH4IV	ACGT	8 cut(s)	273, 297, 498, 503, 579, 587, 651, 1665
HpyCH4V	TGCA	8 cut(s)	673, 781, 1042, 1070, 1337, 1402, 1430, 1630
HpyF10VI	GCNNNNNNNGC	8 cut(s)	166, 194, 197, 351, 859, 887, 1232, 1241
HpyF3I	CTNAG	5 cut(s)	447, 849, 935, 1061, 1272
HpySE526I	ACGT	8 cut(s)	273, 297, 498, 503, 579, 587, 651, 1665
Hsp92I	GRCGYC	4 cut(s)	186, 261, 345, 558
Hsp92II	CATG	7 cut(s)	142, 1042, 1114, 1216, 1304, 1598, 1615
HspAI	GCGC	2 cut(s)	135, 261
KasI	GGCGCC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	910
KroNI	GCCGGC	1 cut(s)	912
Ksp22I	TGATCA	1 cut(s)	510
KspI	CCGCGG	1 cut(s)	638
Kzo9I	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
LmnI	GCTCC	7 cut(s)	14, 229, 371, 454, 895, 949, 1045
Lsp1109I	GCAGC	5 cut(s)	144, 789, 840, 1192, 1219
LweI	GCATC	4 cut(s)	660, 1079, 1439, 1501
MaeI	CTAG	5 cut(s)	828, 1139, 1353, 1475, 1692
MaeII	ACGT	8 cut(s)	273, 297, 498, 503, 579, 587, 651, 1665
MaeIII	GTNAC	3 cut(s)	499, 583, 1451
MalI	GATC	8 cut(s)	210, 243, 329, 400, 512, 547, 1347, 1351
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
MboII	GAAGA	6 cut(s)	616, 711, 766, 1228, 1370, 1528
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	7 cut(s)	11, 356, 368, 416, 883, 1050, 1715
MluCI	AATT	7 cut(s)	124, 469, 551, 1160, 1262, 1388, 1545
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	5 cut(s)	70, 260, 470, 1369, 1459
MmeI	TCCRAC	3 cut(s)	177, 294, 393
Mph1103I	ATGCAT	1 cut(s)	1072
MroNI	GCCGGC	1 cut(s)	910
MseI	TTAA	4 cut(s)	750, 945, 1484, 1548
MspA1I	CMGCKG	3 cut(s)	637, 802, 994
MspI	CCGG	6 cut(s)	483, 562, 598, 641, 884, 911
MspR9I	CCNGG	4 cut(s)	23, 483, 665, 884
Mva1269I	GAATGC	2 cut(s)	837, 1337
MvaI	CCWGG	2 cut(s)	23, 665
MvnI	CGCG	3 cut(s)	173, 397, 637
MwoI	GCNNNNNNNGC	8 cut(s)	166, 194, 197, 351, 859, 887, 1232, 1241
NaeI	GCCGGC	1 cut(s)	912
NarI	GGCGCC	1 cut(s)	261
NciI	CCSGG	2 cut(s)	483, 884
NdeII	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
NgoMIV	GCCGGC	1 cut(s)	910
NlaIII	CATG	7 cut(s)	142, 1042, 1114, 1216, 1304, 1598, 1615
NlaIV	GGNNCC	5 cut(s)	10, 100, 225, 262, 891
NmeAIII	GCCGAG	2 cut(s)	1675, 1708
NmuCI	GTSAC	3 cut(s)	499, 583, 1451
NruI	TCGCGA	1 cut(s)	397
NsiI	ATGCAT	1 cut(s)	1072
NspI	RCATGY	3 cut(s)	1042, 1598, 1615
NspV	TTCGAA	1 cut(s)	986
PaeI	GCATGC	1 cut(s)	1598
PaeR7I	CTCGAG	1 cut(s)	1049
PceI	AGGCCT	1 cut(s)	1178
PciI	ACATGT	1 cut(s)	1611
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 401, 521
PctI	GAATGC	2 cut(s)	837, 1337
PdiI	GCCGGC	1 cut(s)	912
PfeI	GAWTC	4 cut(s)	203, 442, 1085, 1394
Pfl23II	CGTACG	2 cut(s)	270, 1698
PfoI	TCCNGGA	1 cut(s)	481
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	5 cut(s)	69, 260, 469, 1369, 1459
PluTI	GGCGCC	1 cut(s)	264
PpsI	GAGTC	5 cut(s)	69, 260, 469, 1369, 1459
Ppu21I	YACGTR	1 cut(s)	504
PscI	ACATGT	1 cut(s)	1611
PsiI	TTATAA	1 cut(s)	1148
Psp124BI	GAGCTC	4 cut(s)	368, 416, 1050, 1715
Psp1406I	AACGTT	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	21, 663
PspGI	CCWGG	2 cut(s)	21, 663
PspLI	CGTACG	2 cut(s)	270, 1698
PspN4I	GGNNCC	5 cut(s)	10, 100, 225, 262, 891
PspPI	GGNCC	3 cut(s)	25, 595, 1671
PspXI	VCTCGAGB	1 cut(s)	1049
PsrI	GAACNNNNNNTAC	2 cut(s)	605, 637
PsuI	RGATCY	1 cut(s)	241
PvuI	CGATCG	1 cut(s)	330
RruI	TCGCGA	1 cut(s)	397
RsaI	GTAC	6 cut(s)	35, 272, 386, 614, 719, 1700
RsaNI	GTAC	6 cut(s)	34, 271, 385, 613, 718, 1699
Rsr2I	CGGWCCG	1 cut(s)	595
RsrII	CGGWCCG	1 cut(s)	595
SacI	GAGCTC	4 cut(s)	368, 416, 1050, 1715
SacII	CCGCGG	1 cut(s)	638
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	4 cut(s)	750, 945, 1484, 1548
Sau3AI	GATC	8 cut(s)	208, 241, 327, 398, 510, 545, 1345, 1349
Sau96I	GGNCC	3 cut(s)	25, 595, 1671
ScaI	AGTACT	1 cut(s)	719
SchI	GAGTC	5 cut(s)	70, 260, 470, 1369, 1459
ScrFI	CCNGG	4 cut(s)	23, 483, 665, 884
SduI	GDGCHC	7 cut(s)	11, 356, 368, 416, 883, 1050, 1715
SfaNI	GCATC	4 cut(s)	660, 1079, 1439, 1501
SfoI	GGCGCC	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	1049
Sfr303I	CCGCGG	1 cut(s)	638
SfuI	TTCGAA	1 cut(s)	986
SgrBI	CCGCGG	1 cut(s)	638
SinI	GGWCC	3 cut(s)	25, 595, 1671
SlaI	CTCGAG	1 cut(s)	1049
SmlI	CTYRAG	2 cut(s)	721, 1049
SmoI	CTYRAG	2 cut(s)	721, 1049
SpeI	ACTAGT	1 cut(s)	1691
SphI	GCATGC	1 cut(s)	1598
Sse9I	AATT	7 cut(s)	124, 469, 551, 1160, 1262, 1388, 1545
SseBI	AGGCCT	1 cut(s)	1178
SspDI	GGCGCC	1 cut(s)	260
SspI	AATATT	1 cut(s)	1443
SspMI	CTAG	5 cut(s)	828, 1139, 1353, 1475, 1692
SstI	GAGCTC	4 cut(s)	368, 416, 1050, 1715
StuI	AGGCCT	1 cut(s)	1178
StyD4I	CCNGG	4 cut(s)	21, 481, 663, 882
StyI	CCWWGG	1 cut(s)	1674
TaaI	ACNGT	4 cut(s)	38, 436, 1279, 1369
TaiI	ACGT	8 cut(s)	276, 300, 501, 506, 582, 590, 654, 1668
TasI	AATT	7 cut(s)	124, 469, 551, 1160, 1262, 1388, 1545
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	8 cut(s)	191, 200, 568, 637, 640, 737, 848, 994
TfiI	GAWTC	4 cut(s)	203, 442, 1085, 1394
Tru1I	TTAA	4 cut(s)	750, 945, 1484, 1548
Tru9I	TTAA	4 cut(s)	750, 945, 1484, 1548
TscAI	CASTG	2 cut(s)	234, 969
TseFI	GTSAC	3 cut(s)	499, 583, 1451
TseI	GCWGC	5 cut(s)	132, 802, 853, 1205, 1232
Tsp45I	GTSAC	3 cut(s)	499, 583, 1451
TspDTI	ATGAA	5 cut(s)	616, 1229, 1386, 1503, 1554
TspGWI	ACGGA	3 cut(s)	300, 393, 1315
TspRI	CASTG	2 cut(s)	234, 969
VpaK11BI	GGWCC	3 cut(s)	25, 595, 1671
XapI	RAATTY	3 cut(s)	469, 551, 1160
XbaI	TCTAGA	1 cut(s)	827
XceI	RCATGY	3 cut(s)	1042, 1598, 1615
XcmI	CCANNNNNNNNNTGG	2 cut(s)	35, 1307
XhoI	CTCGAG	1 cut(s)	1049
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	5 cut(s)	828, 1139, 1353, 1475, 1692
ZrmI	AGTACT	1 cut(s)	719
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.