Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002060.1

Orthogroup ID

OG0010972

Physical Location & Seq

Genomic Coordinates Reverse (-)

74823 .. 82633

Gene Structure 7811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002060.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

atggattgggaaccaccctacccgtgttcgactcataaagctgtcaaagtggcaaagtccaacatgggtaggggagtccccccacacctcctttttcacactgtcgtcgaagaggaatctccacttcctcgtcgaggacacgaagcgaagagagactacaaagatagattacggagcgaggctacggagggagattacggagagaggctacagagggaaactacagtgggagagagaggctacaaagggagactacggagggaggatactgaggaagacgatgaagggaggttaaggagggagactacagagagaggtgatgaagagagttacagagcggcaccaagttacgaagccaagaggggtcttcgctttatcaagatcaaccttcaaaccttagcaaccgctgctgcatatattgaagccccgaatcctaggagtccagaaccagcggcgccacccaagaaccagtcgaaaaaacttcgaaccagcccccagaagaagcagaaaatctcctgcccagttcgcattcttgcagtccgccttcggccaccatattatgtcaccatcagtgccttgattccagattccgggaaccggaaaatttttcccggaactgaccttaaagttttcgaatcagccactaaaagcaattgcatcgttgaaccgccagagagaagaaaagaaaaaagaaaaaataaaagggaaaggaaaagaaggaagcccaagcccagcagcccagaagaaaaaaaaaacagagaggtagtaggcctattgccacatcagctccccactcagccacgtcagctacggcgactatttcaggccaaattttccgttgatctatttcgagctggtggtataaccatgatgggctctgagaaccaccaggaccatcactacggtggttcgaaagaagagatggagagtctcgtcctcgacgacccgctgccgttgaacaacggcggcgccagtaaatcgtcgtattcgaattaccgcagcgccatgtcgtcgctttccgacacgcaccacccgctctcgtctataatcgtctccacgaccccggccccggccgaatccgatccgcttctgactgcgccaccgccgttccgcgatctccgaaaccctaacggcgccgacagctccgcgtacgtcgacccgccctcttacggcgacgtggttttcagtccgttggatggcgagacgatcggcgaaatcaacggcgtcgagagcccgagcaagagctccgaccattccagctcttattcgctttcgcgatcttcgtcgtccagctccgactatatcaaaatcacggtttcgaatcctcagaaggagcaggagtccacgaattcagttattcccggagggaatacttacgtcacgtatctgatcacgacgaggacgaacattccggagttcggcggctcggaatttggcgtccggcggcggtttcgggacattgtgacgttatcggaccggctggcggaggcgtacagaggcttcttcattccgccgcggccggataagaacgtggtggagagccaggtgatgcagaaacaagagtttgtggagcagaggagagtggcattggagaagtacttgaggcggttagcagctcaccctgtgatcaagaagagtgatgagttgaaggtgtttctgcaagttcaggggaggtttccgttgccgatgaccaccgacgtggcgtcgagaatgctggatggggctgctaagctgccgaagcagttgttcggcgagagttccccggtggctccacacgaggtggttcagccggcgaaaggcgggagggacttgctgaggttattcaaggagctgaagcagtctgtggccaatgactggggaggttcgaagccgcttgtgggagaggaggataaggagtttatggaaaagaaagaccacatgcaggagctcgagcaacaactcagcaatgcatcccagcatgctgaatcgcttgtaaaagctcaacaagacatgggagagactatgggagagttaggactagcatttataaaactgactaagtttgaaaatgaggaggccttgttcaactctcaaagaatacgtgctgctgacatgaagaatgtggcgactgctgctgtaaaagccagcagatactatcgagaattgaattctcagactgtcaaacatttggacacattccatgagtatcttgggctaatgttatccgtcaaaggtgcattctcggatcgatcaagtgctttattgactgttcagactcttctatcagaattgggttcattgcagtcgagggctgaaaaacttgaagttgcatcgaacaaaatttttggtggtgacaaatcaaggactcgcaaactagaggagttaaatgataccataagagctactgaggatgctaagaatatagcaatcagagaatatgagagaatcaaggagaacaacagaagtgaacttgagaggcttgacagcgagaggcatgctgacttcttgaacatgttgaaggggtttgttcataatcaggtgggatatgccgagaaaatagcaaatgtgtggtccaaggttgccgaggagaccagttcgtatgcacgagagagctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

865

Amino Acids

97.35

Weight (kDa)

9.11

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07120 AT5G07120 AT5G07120 AT5G58440
fragaria_vesca	FvH4_3g39770
malus_domestica	MD03G1056600.v1.1 MD11G1058400.v1.1
prunus_persica	Prupe.6G048200_v2.0.a1
pyrus_communis	pycom11g04840
rosa_chinensis	RchiOBHm_Chr5g0071651
rosa_laevigata	RLG00000036238
rosa_multiflora	Rmu_sc0002060.1_g000020 Rmu_sc0005745.1_g000035 Rmu_sc0006567.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009520
rosa_rugosa	Rorug05G0414000
rosa_samantha	Rh5BG489500 Rh5CG513300 Rh5DG500300
rosa_wichuraiana	Rw5G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2027
AccB1I	GGYRCC	4 cut(s)	340, 454, 968, 1133
AccB7I	CCANNNNNTGG	1 cut(s)	1854
AccBSI	CCGCTC	2 cut(s)	338, 1036
AccI	GTMKAC	1 cut(s)	1155
AccII	CGCG	4 cut(s)	1113, 1148, 1276, 1516
AccIII	TCCGGA	1 cut(s)	1411
AclWI	GGATC	2 cut(s)	1076, 2232
AcoI	YGGCCR	4 cut(s)	548, 1071, 1517, 1845
AcsI	RAATTY	6 cut(s)	603, 830, 1348, 1430, 2146, 2319
AcuI	CTGAAG	1 cut(s)	1853
AcyI	GRCGYC	6 cut(s)	455, 969, 1134, 1224, 1437, 1703
AdeI	CACNNNGTG	2 cut(s)	1624, 1780
AfaI	GTAC	3 cut(s)	1151, 1493, 1598
AflIII	ACRYGT	1 cut(s)	2490
AhdI	GACNNNNNGTC	1 cut(s)	1702
AjiI	CACGTC	3 cut(s)	803, 1177, 1699
AjnI	CCWGG	2 cut(s)	888, 1542
AleI	CACNNNNGTG	2 cut(s)	903, 1697
AloI	GAACNNNNNNTCC	2 cut(s)	2045, 2077
Alw21I	GWGCWC	3 cut(s)	1247, 1929, 2594
Alw26I	GTCTC	8 cut(s)	147, 244, 296, 935, 1057, 1196, 1991, 2561
AlwI	GGATC	2 cut(s)	1076, 2232
Ama87I	CYCGRG	2 cut(s)	1234, 1928
Aor13HI	TCCGGA	1 cut(s)	1411
AoxI	GGCC	8 cut(s)	548, 769, 825, 1065, 1071, 1517, 1845, 2055
ApoI	RAATTY	6 cut(s)	603, 830, 1348, 1430, 2146, 2319
ArsI	GACNNNNNNTTYG	2 cut(s)	2534, 2566
AspA2I	CCTAGG	1 cut(s)	434
AspLEI	GCGC	5 cut(s)	457, 971, 1004, 1099, 1136
AspS9I	GGNCC	4 cut(s)	892, 1066, 1474, 2550
AsuC2I	CCSGG	6 cut(s)	592, 612, 1064, 1070, 1362, 1763
AsuHPI	GGTGA	5 cut(s)	329, 556, 1558, 1610, 2342
AsuII	TTCGAA	6 cut(s)	484, 633, 911, 989, 1319, 1865
AvaI	CYCGRG	2 cut(s)	1234, 1928
AvaII	GGWCC	3 cut(s)	892, 1474, 2550
AvrII	CCTAGG	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	1847
BanI	GGYRCC	4 cut(s)	340, 454, 968, 1133
BanII	GRGCYC	5 cut(s)	878, 1235, 1247, 1929, 2594
BarI	GAAGNNNNNNTAC	4 cut(s)	140, 172, 1484, 1516
BauI	CACGAG	2 cut(s)	1775, 2583
BbsI	GAAGAC	2 cut(s)	282, 359
Bbv12I	GWGCWC	3 cut(s)	1247, 1929, 2594
BbvCI	CCTCAGC	1 cut(s)	1814
BccI	CCATC	6 cut(s)	575, 865, 903, 916, 1190, 1712
BceAI	ACGGC	7 cut(s)	827, 937, 979, 1090, 1147, 1186, 1237
BcgI	CGANNNNNNTGC	4 cut(s)	640, 674, 2456, 2490
BciT130I	CCWGG	2 cut(s)	890, 1544
BciVI	GTATCC	1 cut(s)	259
BclI	TGATCA	2 cut(s)	1389, 1626
BcnI	CCSGG	6 cut(s)	592, 612, 1064, 1070, 1362, 1763
BcoDI	GTCTC	8 cut(s)	147, 244, 296, 935, 1057, 1196, 1991, 2561
BfaI	CTAG	3 cut(s)	435, 2018, 2354
BfmI	CTRYAG	3 cut(s)	209, 222, 306
BfoI	RGCGCY	4 cut(s)	458, 972, 1005, 1137
BfuI	GTATCC	1 cut(s)	259
BlnI	CCTAGG	1 cut(s)	434
BlpI	GCTNAGC	1 cut(s)	1728
BmcAI	AGTACT	1 cut(s)	1598
Bme1390I	CCNGG	8 cut(s)	592, 612, 890, 1064, 1070, 1362, 1544, 1763
Bme18I	GGWCC	3 cut(s)	892, 1474, 2550
BmeRI	GACNNNNNGTC	1 cut(s)	1702
BmeT110I	CYCGRG	2 cut(s)	1234, 1928
BmgBI	CACGTC	3 cut(s)	803, 1177, 1699
BmgT120I	GGNCC	4 cut(s)	892, 1066, 1474, 2550
BmiI	GGNNCC	8 cut(s)	12, 342, 456, 596, 970, 1068, 1135, 1770
BmrFI	CCNGG	8 cut(s)	592, 612, 890, 1064, 1070, 1362, 1544, 1763
BmrI	ACTGGG	2 cut(s)	515, 1864
BmsI	GCATC	5 cut(s)	666, 1539, 1958, 2318, 2380
BmuI	ACTGGG	2 cut(s)	515, 1864
BpiI	GAAGAC	2 cut(s)	282, 359
Bpu10I	CCTNAGC	2 cut(s)	397, 1814
Bpu1102I	GCTNAGC	1 cut(s)	1728
Bpu14I	TTCGAA	6 cut(s)	484, 633, 911, 989, 1319, 1865
BpuEI	CTTGAG	2 cut(s)	1621, 2471
BpuMI	CCSGG	6 cut(s)	592, 612, 1064, 1070, 1362, 1763
Bsa29I	ATCGAT	1 cut(s)	2227
BsaAI	YACGTR	2 cut(s)	1383, 2081
BsaHI	GRCGYC	6 cut(s)	455, 969, 1134, 1224, 1437, 1703
BsaI	GGTCTC	1 cut(s)	2561
BsaJI	CCNNGG	7 cut(s)	434, 1062, 1068, 1514, 1761, 2553, 2562
BsaWI	WCCGGW	2 cut(s)	597, 1411
BsaXI	ACNNNNNCTCC	6 cut(s)	771, 801, 1325, 1355, 2045, 2075
Bse118I	RCCGGY	2 cut(s)	1476, 1789
Bse1I	ACTGG	5 cut(s)	469, 521, 972, 1859, 2571
Bse3DI	GCAATG	2 cut(s)	1951, 2276
BseAI	TCCGGA	1 cut(s)	1411
BseBI	CCWGG	2 cut(s)	890, 1544
BseCI	ATCGAT	1 cut(s)	2227
BseDI	CCNNGG	7 cut(s)	434, 1062, 1068, 1514, 1761, 2553, 2562
BseGI	GGATG	4 cut(s)	1201, 1723, 1949, 2395
BseMI	GCAATG	2 cut(s)	1951, 2276
BseMII	CTCAG	8 cut(s)	261, 809, 870, 1340, 1805, 1954, 2165, 2376
BseNI	ACTGG	5 cut(s)	469, 521, 972, 1859, 2571
BseRI	GAGGAG	5 cut(s)	1591, 1898, 2066, 2372, 2579
BseX3I	CGGCCG	2 cut(s)	1071, 1517
BseYI	CCCAGC	2 cut(s)	731, 1953
Bsh1236I	CGCG	4 cut(s)	1113, 1148, 1276, 1516
Bsh1285I	CGRYCG	3 cut(s)	1074, 1209, 1520
BshFI	GGCC	8 cut(s)	550, 771, 827, 1067, 1073, 1519, 1847, 2057
BshNI	GGYRCC	4 cut(s)	340, 454, 968, 1133
BshVI	ATCGAT	1 cut(s)	2227
BsiEI	CGRYCG	3 cut(s)	1074, 1209, 1520
BsiHKAI	GWGCWC	3 cut(s)	1247, 1929, 2594
BsiHKCI	CYCGRG	2 cut(s)	1234, 1928
BsiWI	CGTACG	1 cut(s)	1149
BslFI	GGGAC	3 cut(s)	62, 1469, 1820
BsmAI	GTCTC	8 cut(s)	147, 244, 296, 935, 1057, 1196, 1991, 2561
BsmBI	CGTCTC	2 cut(s)	1057, 1196
BsmFI	GGGAC	3 cut(s)	62, 1469, 1820
BsmI	GAATGC	3 cut(s)	528, 1716, 2216
BsnI	GGCC	8 cut(s)	550, 771, 827, 1067, 1073, 1519, 1847, 2057
Bso31I	GGTCTC	1 cut(s)	2561
BsoBI	CYCGRG	2 cut(s)	1234, 1928
Bsp119I	TTCGAA	6 cut(s)	484, 633, 911, 989, 1319, 1865
Bsp1286I	GDGCHC	5 cut(s)	878, 1235, 1247, 1929, 2594
Bsp13I	TCCGGA	1 cut(s)	1411
Bsp1720I	GCTNAGC	1 cut(s)	1728
Bsp68I	TCGCGA	1 cut(s)	1276
BspANI	GGCC	8 cut(s)	550, 771, 827, 1067, 1073, 1519, 1847, 2057
BspCNI	CTCAG	8 cut(s)	262, 808, 871, 1339, 1806, 1953, 2164, 2377
BspDI	ATCGAT	1 cut(s)	2227
BspEI	TCCGGA	1 cut(s)	1411
BspFNI	CGCG	4 cut(s)	1113, 1148, 1276, 1516
BspLI	GGNNCC	8 cut(s)	12, 342, 456, 596, 970, 1068, 1135, 1770
BspPI	GGATC	2 cut(s)	1076, 2232
BspT104I	TTCGAA	6 cut(s)	484, 633, 911, 989, 1319, 1865
BspT107I	GGYRCC	4 cut(s)	340, 454, 968, 1133
BspTNI	GGTCTC	1 cut(s)	2561
BsrBI	CCGCTC	2 cut(s)	338, 1036
BsrDI	GCAATG	2 cut(s)	1951, 2276
BsrFI	RCCGGY	2 cut(s)	1476, 1789
BsrI	ACTGG	5 cut(s)	469, 521, 972, 1859, 2571
BssAI	RCCGGY	2 cut(s)	1476, 1789
BssECI	CCNNGG	7 cut(s)	434, 1062, 1068, 1514, 1761, 2553, 2562
BssNI	GRCGYC	6 cut(s)	455, 969, 1134, 1224, 1437, 1703
BssSI	CACGAG	2 cut(s)	1775, 2583
BssT1I	CCWWGG	2 cut(s)	434, 2553
Bst2BI	CACGAG	2 cut(s)	1775, 2583
Bst2UI	CCWGG	2 cut(s)	890, 1544
Bst4CI	ACNGT	6 cut(s)	103, 226, 905, 1315, 2158, 2248
Bst6I	CTCTTC	6 cut(s)	105, 143, 318, 912, 1628, 2262
BstACI	GRCGYC	6 cut(s)	455, 969, 1134, 1224, 1437, 1703
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	2 cut(s)	1383, 2081
BstBI	TTCGAA	6 cut(s)	484, 633, 911, 989, 1319, 1865
BstC8I	GCNNGC	5 cut(s)	1482, 1791, 1959, 2125, 2475
BstDSI	CCRYGG	1 cut(s)	1514
BstENI	CCTNNNNNAGG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	1201, 1723, 1949, 2395
BstFNI	CGCG	4 cut(s)	1113, 1148, 1276, 1516
BstH2I	RGCGCY	4 cut(s)	458, 972, 1005, 1137
BstHHI	GCGC	5 cut(s)	457, 971, 1004, 1099, 1136
BstMAI	GTCTC	8 cut(s)	147, 244, 296, 935, 1057, 1196, 1991, 2561
BstMCI	CGRYCG	3 cut(s)	1074, 1209, 1520
BstNI	CCWGG	2 cut(s)	890, 1544
BstNSI	RCATGY	4 cut(s)	1921, 1961, 2477, 2494
BstSCI	CCNGG	8 cut(s)	590, 610, 888, 1062, 1068, 1360, 1542, 1761
BstSFI	CTRYAG	3 cut(s)	209, 222, 306
BstUI	CGCG	4 cut(s)	1113, 1148, 1276, 1516
BstV2I	GAAGAC	2 cut(s)	282, 359
BstXI	CCANNNNNNTGG	1 cut(s)	1699
BstZI	CGGCCG	2 cut(s)	1071, 1517
Bsu15I	ATCGAT	1 cut(s)	2227
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	8 cut(s)	550, 771, 827, 1067, 1073, 1519, 1847, 2057
BsuTUI	ATCGAT	1 cut(s)	2227
BtgI	CCRYGG	1 cut(s)	1514
BtrI	CACGTC	3 cut(s)	803, 1177, 1699
BtsCI	GGATG	4 cut(s)	1201, 1723, 1949, 2395
BtsIMutI	CAGTG	3 cut(s)	99, 231, 577
BtuMI	TCGCGA	1 cut(s)	1276
Cac8I	GCNNGC	5 cut(s)	1482, 1791, 1959, 2125, 2475
CfoI	GCGC	5 cut(s)	457, 971, 1004, 1099, 1136
Cfr10I	RCCGGY	2 cut(s)	1476, 1789
Cfr13I	GGNCC	4 cut(s)	892, 1066, 1474, 2550
Cfr42I	CCGCGG	1 cut(s)	1517
ClaI	ATCGAT	1 cut(s)	2227
CpoI	CGGWCCG	1 cut(s)	1474
CseI	GACGC	3 cut(s)	1213, 1426, 1692
Csp6I	GTAC	3 cut(s)	1150, 1492, 1597
CspI	CGGWCCG	1 cut(s)	1474
CviQI	GTAC	3 cut(s)	1150, 1492, 1597
DinI	GGCGCC	3 cut(s)	456, 970, 1135
DraIII	CACNNNGTG	2 cut(s)	1624, 1780
DriI	GACNNNNNGTC	1 cut(s)	1702
EaeI	YGGCCR	4 cut(s)	548, 1071, 1517, 1845
EagI	CGGCCG	2 cut(s)	1071, 1517
Eam1104I	CTCTTC	6 cut(s)	105, 143, 318, 912, 1628, 2262
Eam1105I	GACNNNNNGTC	1 cut(s)	1702
EarI	CTCTTC	6 cut(s)	105, 143, 318, 912, 1628, 2262
EciI	GGCGGA	3 cut(s)	530, 1499, 1500
Ecl136II	GAGCTC	3 cut(s)	1245, 1927, 2592
EclXI	CGGCCG	2 cut(s)	1071, 1517
Eco130I	CCWWGG	2 cut(s)	434, 2553
Eco147I	AGGCCT	2 cut(s)	771, 2057
Eco24I	GRGCYC	5 cut(s)	878, 1235, 1247, 1929, 2594
Eco31I	GGTCTC	1 cut(s)	2561
Eco47I	GGWCC	3 cut(s)	892, 1474, 2550
Eco52I	CGGCCG	2 cut(s)	1071, 1517
Eco53kI	GAGCTC	3 cut(s)	1245, 1927, 2592
Eco57I	CTGAAG	1 cut(s)	1853
Eco88I	CYCGRG	2 cut(s)	1234, 1928
EcoICRI	GAGCTC	3 cut(s)	1245, 1927, 2592
EcoNI	CCTNNNNNAGG	1 cut(s)	132
EcoRI	GAATTC	2 cut(s)	1348, 2146
EcoRII	CCWGG	2 cut(s)	888, 1542
EcoT14I	CCWWGG	2 cut(s)	434, 2553
EcoT22I	ATGCAT	1 cut(s)	1951
EcoT38I	GRGCYC	5 cut(s)	878, 1235, 1247, 1929, 2594
EgeI	GGCGCC	3 cut(s)	456, 970, 1135
EheI	GGCGCC	3 cut(s)	456, 970, 1135
ErhI	CCWWGG	2 cut(s)	434, 2553
Esp3I	CGTCTC	2 cut(s)	1057, 1196
FaqI	GGGAC	3 cut(s)	62, 1469, 1820
FauI	CCCGC	4 cut(s)	954, 1041, 1167, 1793
FbaI	TGATCA	2 cut(s)	1389, 1626
FblI	GTMKAC	1 cut(s)	1155
FokI	GGATG	4 cut(s)	1208, 1730, 1936, 2402
FriOI	GRGCYC	5 cut(s)	878, 1235, 1247, 1929, 2594
FspBI	CTAG	3 cut(s)	435, 2018, 2354
GlaI	GCGC	5 cut(s)	456, 970, 1003, 1098, 1135
GsaI	CCCAGC	2 cut(s)	735, 1957
HaeII	RGCGCY	4 cut(s)	458, 972, 1005, 1137
HaeIII	GGCC	8 cut(s)	550, 771, 827, 1067, 1073, 1519, 1847, 2057
HgaI	GACGC	3 cut(s)	1213, 1426, 1692
HhaI	GCGC	5 cut(s)	457, 971, 1004, 1099, 1136
Hin1I	GRCGYC	6 cut(s)	455, 969, 1134, 1224, 1437, 1703
Hin6I	GCGC	5 cut(s)	455, 969, 1002, 1097, 1134
HinP1I	GCGC	5 cut(s)	455, 969, 1002, 1097, 1134
HincII	GTYRAC	1 cut(s)	1156
HindII	GTYRAC	1 cut(s)	1156
HphI	GGTGA	5 cut(s)	329, 556, 1558, 1610, 2342
Hpy166II	GTNNAC	3 cut(s)	1156, 1344, 2447
Hpy8I	GTNNAC	3 cut(s)	1156, 1344, 2447
HpyAV	CCTTC	7 cut(s)	278, 398, 554, 711, 1324, 1642, 2491
HpyCH4III	ACNGT	6 cut(s)	103, 226, 905, 1315, 2158, 2248
HpyCH4IV	ACGT	9 cut(s)	802, 1152, 1176, 1377, 1382, 1466, 1530, 1698, 2080
HpySE526I	ACGT	9 cut(s)	802, 1152, 1176, 1377, 1382, 1466, 1530, 1698, 2080
Hsp92I	GRCGYC	6 cut(s)	455, 969, 1134, 1224, 1437, 1703
HspAI	GCGC	5 cut(s)	455, 969, 1002, 1097, 1134
KasI	GGCGCC	3 cut(s)	454, 968, 1133
Kpn2I	TCCGGA	1 cut(s)	1411
KroI	GCCGGC	1 cut(s)	1789
KroNI	GCCGGC	1 cut(s)	1791
Ksp22I	TGATCA	2 cut(s)	1389, 1626
KspI	CCGCGG	1 cut(s)	1517
LweI	GCATC	5 cut(s)	666, 1539, 1958, 2318, 2380
MaeI	CTAG	3 cut(s)	435, 2018, 2354
MaeII	ACGT	9 cut(s)	802, 1152, 1176, 1377, 1382, 1466, 1530, 1698, 2080
MaeIII	GTNAC	6 cut(s)	329, 347, 562, 1378, 1462, 2330
MbiI	CCGCTC	2 cut(s)	338, 1036
MfeI	CAATTG	1 cut(s)	652
MhlI	GDGCHC	5 cut(s)	878, 1235, 1247, 1929, 2594
MlsI	TGGCCA	1 cut(s)	1847
MluNI	TGGCCA	1 cut(s)	1847
Mly113I	GGCGCC	3 cut(s)	455, 969, 1134
MlyI	GAGTC	7 cut(s)	25, 84, 448, 937, 1349, 2248, 2338
MmeI	TCCRAC	5 cut(s)	84, 1044, 1173, 1272, 1320
Mox20I	TGGCCA	1 cut(s)	1847
Mph1103I	ATGCAT	1 cut(s)	1951
MroI	TCCGGA	1 cut(s)	1411
MroNI	GCCGGC	1 cut(s)	1789
MscI	TGGCCA	1 cut(s)	1847
MseI	TTAA	3 cut(s)	293, 624, 2363
MslI	CAYNNNNRTG	2 cut(s)	903, 1697
Msp20I	TGGCCA	1 cut(s)	1847
MspA1I	CMGCKG	4 cut(s)	407, 452, 949, 1516
MspR9I	CCNGG	8 cut(s)	592, 612, 890, 1064, 1070, 1362, 1544, 1763
MunI	CAATTG	1 cut(s)	652
Mva1269I	GAATGC	3 cut(s)	528, 1716, 2216
MvaI	CCWGG	2 cut(s)	890, 1544
MvnI	CGCG	4 cut(s)	1113, 1148, 1276, 1516
NaeI	GCCGGC	1 cut(s)	1791
NarI	GGCGCC	3 cut(s)	455, 969, 1134
NciI	CCSGG	6 cut(s)	592, 612, 1064, 1070, 1362, 1763
NgoMIV	GCCGGC	1 cut(s)	1789
NlaIV	GGNNCC	8 cut(s)	12, 342, 456, 596, 970, 1068, 1135, 1770
NmeAIII	GCCGAG	2 cut(s)	2554, 2587
NmuCI	GTSAC	4 cut(s)	562, 1378, 1462, 2330
NruI	TCGCGA	1 cut(s)	1276
NsiI	ATGCAT	1 cut(s)	1951
NspI	RCATGY	4 cut(s)	1921, 1961, 2477, 2494
NspV	TTCGAA	6 cut(s)	484, 633, 911, 989, 1319, 1865
OliI	CACNNNNGTG	2 cut(s)	903, 1697
PaeI	GCATGC	2 cut(s)	1961, 2477
PaeR7I	CTCGAG	1 cut(s)	1928
PceI	AGGCCT	2 cut(s)	771, 2057
PciI	ACATGT	1 cut(s)	2490
PcsI	WCGNNNNNNNCGW	4 cut(s)	939, 986, 1280, 1400
PctI	GAATGC	3 cut(s)	528, 1716, 2216
PdiI	GCCGGC	1 cut(s)	1791
PfeI	GAWTC	9 cut(s)	116, 430, 580, 587, 635, 1076, 1321, 1964, 2424
Pfl23II	CGTACG	1 cut(s)	1149
PflMI	CCANNNNNTGG	1 cut(s)	1854
PfoI	TCCNGGA	3 cut(s)	590, 610, 1360
Ple19I	CGATCG	1 cut(s)	1209
PleI	GAGTC	7 cut(s)	25, 83, 447, 936, 1348, 2248, 2338
PluTI	GGCGCC	3 cut(s)	458, 972, 1137
PpsI	GAGTC	7 cut(s)	25, 83, 447, 936, 1348, 2248, 2338
Ppu21I	YACGTR	2 cut(s)	1383, 2081
PscI	ACATGT	1 cut(s)	2490
PsiI	TTATAA	1 cut(s)	2027
Psp124BI	GAGCTC	3 cut(s)	1247, 1929, 2594
Psp6I	CCWGG	2 cut(s)	888, 1542
PspFI	CCCAGC	2 cut(s)	731, 1953
PspGI	CCWGG	2 cut(s)	888, 1542
PspLI	CGTACG	1 cut(s)	1149
PspN4I	GGNNCC	8 cut(s)	12, 342, 456, 596, 970, 1068, 1135, 1770
PspPI	GGNCC	4 cut(s)	892, 1066, 1474, 2550
PspXI	VCTCGAGB	1 cut(s)	1928
PvuI	CGATCG	1 cut(s)	1209
RruI	TCGCGA	1 cut(s)	1276
RsaI	GTAC	3 cut(s)	1151, 1493, 1598
RsaNI	GTAC	3 cut(s)	1150, 1492, 1597
RseI	CAYNNNNRTG	2 cut(s)	903, 1697
Rsr2I	CGGWCCG	1 cut(s)	1474
RsrII	CGGWCCG	1 cut(s)	1474
SacI	GAGCTC	3 cut(s)	1247, 1929, 2594
SacII	CCGCGG	1 cut(s)	1517
SalI	GTCGAC	1 cut(s)	1154
SaqAI	TTAA	3 cut(s)	293, 624, 2363
Sau96I	GGNCC	4 cut(s)	892, 1066, 1474, 2550
ScaI	AGTACT	1 cut(s)	1598
SchI	GAGTC	7 cut(s)	25, 84, 448, 937, 1349, 2248, 2338
ScrFI	CCNGG	8 cut(s)	592, 612, 890, 1064, 1070, 1362, 1544, 1763
SduI	GDGCHC	5 cut(s)	878, 1235, 1247, 1929, 2594
SfaNI	GCATC	5 cut(s)	666, 1539, 1958, 2318, 2380
SfcI	CTRYAG	3 cut(s)	209, 222, 306
SfoI	GGCGCC	3 cut(s)	456, 970, 1135
Sfr274I	CTCGAG	1 cut(s)	1928
Sfr303I	CCGCGG	1 cut(s)	1517
SfuI	TTCGAA	6 cut(s)	484, 633, 911, 989, 1319, 1865
SgrBI	CCGCGG	1 cut(s)	1517
SinI	GGWCC	3 cut(s)	892, 1474, 2550
SlaI	CTCGAG	1 cut(s)	1928
SmiMI	CAYNNNNRTG	2 cut(s)	903, 1697
SmlI	CTYRAG	3 cut(s)	1600, 1928, 2450
SmoI	CTYRAG	3 cut(s)	1600, 1928, 2450
SphI	GCATGC	2 cut(s)	1961, 2477
SseBI	AGGCCT	2 cut(s)	771, 2057
SspDI	GGCGCC	3 cut(s)	454, 968, 1133
SspMI	CTAG	3 cut(s)	435, 2018, 2354
SstI	GAGCTC	3 cut(s)	1247, 1929, 2594
StuI	AGGCCT	2 cut(s)	771, 2057
StyD4I	CCNGG	8 cut(s)	590, 610, 888, 1062, 1068, 1360, 1542, 1761
StyI	CCWWGG	2 cut(s)	434, 2553
TaaI	ACNGT	6 cut(s)	103, 226, 905, 1315, 2158, 2248
TaiI	ACGT	9 cut(s)	805, 1155, 1179, 1380, 1385, 1469, 1533, 1701, 2083
TatI	WGTACW	1 cut(s)	1596
TauI	GCSGC	8 cut(s)	341, 455, 969, 1425, 1447, 1516, 1519, 1873
TfiI	GAWTC	9 cut(s)	116, 430, 580, 587, 635, 1076, 1321, 1964, 2424
Tru1I	TTAA	3 cut(s)	293, 624, 2363
Tru9I	TTAA	3 cut(s)	293, 624, 2363
TscAI	CASTG	3 cut(s)	106, 231, 577
TseFI	GTSAC	4 cut(s)	562, 1378, 1462, 2330
Tsp45I	GTSAC	4 cut(s)	562, 1378, 1462, 2330
TspDTI	ATGAA	6 cut(s)	297, 336, 1495, 2108, 2265, 2498
TspGWI	ACGGA	8 cut(s)	187, 200, 213, 271, 826, 1179, 1668, 2194
TspRI	CASTG	3 cut(s)	106, 231, 577
Van91I	CCANNNNNTGG	1 cut(s)	1854
VpaK11BI	GGWCC	3 cut(s)	892, 1474, 2550
XagI	CCTNNNNNAGG	1 cut(s)	132
XapI	RAATTY	6 cut(s)	603, 830, 1348, 1430, 2146, 2319
XceI	RCATGY	4 cut(s)	1921, 1961, 2477, 2494
XcmI	CCANNNNNNNNNTGG	2 cut(s)	902, 2186
XhoI	CTCGAG	1 cut(s)	1928
XmaJI	CCTAGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	1155
XspI	CTAG	3 cut(s)	435, 2018, 2354
ZrmI	AGTACT	1 cut(s)	1598
Zsp2I	ATGCAT	1 cut(s)	1951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.