Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010972

Physical Location & Seq

Genomic Coordinates Reverse (-)

12027517 .. 12032992

Gene Structure 5476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGATGGGCTCTGAGAACCACCAGGACCATCAATACGGTGGTTCGAAAGAAGAGATGGAGAGTCTCGTCCTCGACGACCCGCCGCCGTTGAACAACGGCAACGGCGGCGCCAGTAAATCGTCGTATTCGAATTACCGCAGCGCCATGTCGTCGCTCTCCGACACGCACCACCCGCTCTCGTCTATAATCGTCTCCACGACCCCGGCCCCGGCCGATTCCGATCCGCTTCTGACTGCGCCACCGCCGTTCCGCGATCTCCGAAACCCTAACGGCGCCGACAGTTCCGCGTACGCCGACCCGCCCTCTTACGGCGACGTGGTTTTTAGTCCGTTGGATGGCGAGACGATCGGCGAAATCAACGGCGTCGAGAGTCCGAGCAAGAGCTCCGATCATTCCAGCTCTCATTCGCTTTCGCGATCTTCGTCTTCCAGCTCCGACTATATGAAAATCACGGTTTCGAATCCTCAGAAGGAGCAGGAGTCCACGAATTCGGTTATTCCCGGAGGGAATACTTACGTCACGTATCTGATCACGACGAGGACGAACATTCCGGAGTTCGGCGGATCGGAATTCGGAGTCCGGCGGCGGTTTCGGGACATTGTGACGTTATCGGACCGGCTGGCCGAGGCGTACAGAGGGTTCTTCATTCCGCCGCGGCCGGATAAGAACGTGGTGGAGAGCCAGGTGATGCAGAAACAAGAATTTGTGGAGCAGAGAAGAGTGGCATTGGAGAAGTACTTGAGGCGGTTAGCGGCTCACCCTGTGATCAAGAAGAGTGATGAGTTGAAGGTGTTTCTGCAAGTTCAGGGGAGGTTTCCGTTGCCGATGACCACCGACGTGGCCTCGAGAATGCTGGATGGGGCTGCTAAGCTGCCCAAGCAGTTGTTTGGCGAGAGTTCCCCGGTGGCTCCACACGAGGTGGTTCAGCCAGCGAAAGGCGGGAGGGACTTGCTGAGGTTGTTCAAGGAGCTGAAGCAGTCTGTGGCCAATGACTGGGGAGGTTCGAAGCCGCTTGTGGGAGAGGAGGATAAGGAGTTTATGGAAAAGAAGGACCACATGCAGGAGCTCGAGCAACAACTCAGCAATGCATCTCAGCATGCTGAATCACTTGTAAAAGCTCAACAAGACATGGGAGAGACTATGGGAGAGTTAGGACTAGCATTTATAAAACTGACTAAGTTTGAAAATGAGGAGGCCTTGTTCAACTCTCAAAGAATACGTGCTGCTGACATGAAGAATGTGGCGACTGCTGCTGTAAAAGCCAGCAGATACTATCGAGAATTGAATTCTCAGACTGTCAAACATTTGGACACATTCCATGAGTATCTTGGGCTAATGTTATCCGTCAAAGGTGCATTCTCGGATCGATCAAGTGCTTTATTGACTGTTCAGACTCTTCTATCAGAATTGGGTTCATTGCAGTCGAGGGCTGAAAAACTTGAAGTTGCATCAAACAAAATTTTTGGTGGTGACAAATCAAGGACTCGCAAACTTGAGGAGTTAAATGAAACCATAAGAGCTACTGAGGATGCTAAGAATATAGCAATCAGAGAATATGAGAGAATCAAGGAAAACAACAGAAGTGAACTTGAGAGGCTTGACAGCGAGAGGCATGCTGACTTCTTGAACATGTTGAAGGGGTTTGTTCATAATCAGGTGGGATATGCCGAGAAAATAGCAAATGTGTGGTCCAAGGTTGCCGAGGAGACCAGTTCGTATGCACGAGAGAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

578

Amino Acids

64.22

Weight (kDa)

5.81

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	185 - 268	3.9e-18	PX domain
Vps5	PF09325	336 - 568	2.5e-21	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07120 AT5G07120 AT5G07120 AT5G58440
fragaria_vesca	FvH4_3g39770
malus_domestica	MD03G1056600.v1.1 MD11G1058400.v1.1
prunus_persica	Prupe.6G048200_v2.0.a1
pyrus_communis	pycom11g04840
rosa_chinensis	RchiOBHm_Chr5g0071651
rosa_laevigata	RLG00000036238
rosa_multiflora	Rmu_sc0002060.1_g000020 Rmu_sc0005745.1_g000035 Rmu_sc0006567.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009520
rosa_rugosa	Rorug05G0414000
rosa_samantha	Rh5BG489500 Rh5CG513300 Rh5DG500300
rosa_wichuraiana	Rw5G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
AccB1I	GGYRCC	2 cut(s)	107, 272
AccB7I	CCANNNNNTGG	1 cut(s)	993
AccBSI	CCGCTC	1 cut(s)	175
AccII	CGCG	4 cut(s)	252, 287, 415, 655
AccIII	TCCGGA	1 cut(s)	550
AclWI	GGATC	3 cut(s)	215, 571, 1371
AcoI	YGGCCR	4 cut(s)	210, 621, 656, 984
AcsI	RAATTY	5 cut(s)	487, 569, 701, 1285, 1458
AcuI	CTGAAG	1 cut(s)	992
AcyI	GRCGYC	3 cut(s)	108, 273, 363
AdeI	CACNNNGTG	2 cut(s)	763, 919
AfaI	GTAC	3 cut(s)	290, 632, 737
AfiI	CCNNNNNNNGG	8 cut(s)	208, 308, 335, 557, 935, 993, 1016, 1060
AflIII	ACRYGT	1 cut(s)	1629
AgsI	TTSAA	9 cut(s)	91, 787, 964, 1184, 1204, 1285, 1442, 1627, 1636
AjiI	CACGTC	2 cut(s)	316, 838
AjnI	CCWGG	2 cut(s)	21, 681
AleI	CACNNNNGTG	1 cut(s)	836
AloI	GAACNNNNNNTCC	2 cut(s)	1184, 1216
AluBI	AGCT	9 cut(s)	384, 399, 432, 871, 970, 1066, 1118, 1520, 1731
AluI	AGCT	9 cut(s)	384, 399, 432, 871, 970, 1066, 1118, 1520, 1731
Alw21I	GWGCWC	3 cut(s)	386, 1068, 1733
Alw26I	GTCTC	5 cut(s)	68, 196, 335, 1130, 1700
AlwI	GGATC	3 cut(s)	215, 571, 1371
Ama87I	CYCGRG	2 cut(s)	844, 1067
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	7 cut(s)	204, 210, 621, 656, 840, 984, 1194
ApeKI	GCWGC	5 cut(s)	138, 863, 871, 1223, 1250
ApoI	RAATTY	5 cut(s)	487, 569, 701, 1285, 1458
ArsI	GACNNNNNNTTYG	2 cut(s)	1673, 1705
AspLEI	GCGC	4 cut(s)	110, 143, 238, 275
AspS9I	GGNCC	5 cut(s)	25, 205, 613, 1051, 1689
AsuC2I	CCSGG	4 cut(s)	203, 209, 501, 902
AsuHPI	GGTGA	3 cut(s)	697, 749, 1481
AsuII	TTCGAA	4 cut(s)	44, 128, 458, 1004
AvaI	CYCGRG	2 cut(s)	844, 1067
AvaII	GGWCC	4 cut(s)	25, 613, 1051, 1689
BalI	TGGCCA	1 cut(s)	986
BanI	GGYRCC	2 cut(s)	107, 272
BanII	GRGCYC	4 cut(s)	11, 386, 1068, 1733
BauI	CACGAG	2 cut(s)	914, 1722
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	3 cut(s)	386, 1068, 1733
BbvCI	CCTCAGC	1 cut(s)	953
BbvI	GCAGC	5 cut(s)	150, 850, 858, 1210, 1237
BccI	CCATC	4 cut(s)	36, 49, 329, 851
BceAI	ACGGC	7 cut(s)	70, 112, 118, 229, 286, 325, 376
BcgI	CGANNNNNNTGC	2 cut(s)	1595, 1629
BciT130I	CCWGG	2 cut(s)	23, 683
BclI	TGATCA	2 cut(s)	528, 765
BcnI	CCSGG	4 cut(s)	203, 209, 501, 902
BcoDI	GTCTC	5 cut(s)	68, 196, 335, 1130, 1700
BfaI	CTAG	1 cut(s)	1157
BfoI	RGCGCY	3 cut(s)	111, 144, 276
BlpI	GCTNAGC	1 cut(s)	867
BmcAI	AGTACT	1 cut(s)	737
Bme1390I	CCNGG	6 cut(s)	23, 203, 209, 501, 683, 902
Bme18I	GGWCC	4 cut(s)	25, 613, 1051, 1689
BmeT110I	CYCGRG	2 cut(s)	844, 1067
BmgBI	CACGTC	2 cut(s)	316, 838
BmgT120I	GGNCC	5 cut(s)	25, 205, 613, 1051, 1689
BmiI	GGNNCC	4 cut(s)	109, 207, 274, 909
BmrFI	CCNGG	6 cut(s)	23, 203, 209, 501, 683, 902
BmrI	ACTGGG	1 cut(s)	1003
BmsI	GCATC	4 cut(s)	678, 1097, 1457, 1519
BmuI	ACTGGG	1 cut(s)	1003
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	953
Bpu1102I	GCTNAGC	1 cut(s)	867
Bpu14I	TTCGAA	4 cut(s)	44, 128, 458, 1004
BpuEI	CTTGAG	3 cut(s)	760, 1514, 1610
BpuMI	CCSGG	4 cut(s)	203, 209, 501, 902
Bsa29I	ATCGAT	1 cut(s)	1366
BsaAI	YACGTR	2 cut(s)	522, 1220
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	3 cut(s)	108, 273, 363
BsaI	GGTCTC	1 cut(s)	1700
BsaJI	CCNNGG	7 cut(s)	201, 207, 624, 653, 900, 1692, 1701
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	4 cut(s)	464, 494, 1184, 1214
Bsc4I	CCNNNNNNNGG	8 cut(s)	208, 308, 335, 557, 935, 993, 1016, 1060
Bse118I	RCCGGY	1 cut(s)	615
Bse1I	ACTGG	3 cut(s)	111, 998, 1710
Bse3DI	GCAATG	2 cut(s)	1090, 1415
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	23, 683
BseCI	ATCGAT	1 cut(s)	1366
BseDI	CCNNGG	7 cut(s)	201, 207, 624, 653, 900, 1692, 1701
BseGI	GGATG	3 cut(s)	340, 862, 1534
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	8 cut(s)	208, 308, 335, 557, 935, 993, 1016, 1060
BseMI	GCAATG	2 cut(s)	1090, 1415
BseMII	CTCAG	6 cut(s)	479, 944, 1093, 1106, 1304, 1515
BseNI	ACTGG	3 cut(s)	111, 998, 1710
BseRI	GAGGAG	4 cut(s)	1037, 1205, 1511, 1718
BseX3I	CGGCCG	2 cut(s)	210, 656
BseXI	GCAGC	5 cut(s)	150, 850, 858, 1210, 1237
Bsh1236I	CGCG	4 cut(s)	252, 287, 415, 655
Bsh1285I	CGRYCG	3 cut(s)	213, 348, 659
BshFI	GGCC	7 cut(s)	206, 212, 623, 658, 842, 986, 1196
BshNI	GGYRCC	2 cut(s)	107, 272
BshVI	ATCGAT	1 cut(s)	1366
BsiEI	CGRYCG	3 cut(s)	213, 348, 659
BsiHKAI	GWGCWC	3 cut(s)	386, 1068, 1733
BsiHKCI	CYCGRG	2 cut(s)	844, 1067
BsiSI	CCGG	8 cut(s)	203, 209, 501, 551, 580, 616, 659, 902
BsiWI	CGTACG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	608, 959
BslI	CCNNNNNNNGG	8 cut(s)	208, 308, 335, 557, 935, 993, 1016, 1060
BsmAI	GTCTC	5 cut(s)	68, 196, 335, 1130, 1700
BsmBI	CGTCTC	2 cut(s)	196, 335
BsmFI	GGGAC	2 cut(s)	608, 959
BsmI	GAATGC	2 cut(s)	855, 1355
BsnI	GGCC	7 cut(s)	206, 212, 623, 658, 842, 986, 1196
Bso31I	GGTCTC	1 cut(s)	1700
BsoBI	CYCGRG	2 cut(s)	844, 1067
Bsp119I	TTCGAA	4 cut(s)	44, 128, 458, 1004
Bsp1286I	GDGCHC	4 cut(s)	11, 386, 1068, 1733
Bsp13I	TCCGGA	1 cut(s)	550
Bsp1720I	GCTNAGC	1 cut(s)	867
Bsp68I	TCGCGA	1 cut(s)	415
BspANI	GGCC	7 cut(s)	206, 212, 623, 658, 842, 986, 1196
BspCNI	CTCAG	7 cut(s)	4, 478, 945, 1092, 1105, 1303, 1516
BspDI	ATCGAT	1 cut(s)	1366
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	4 cut(s)	252, 287, 415, 655
BspLI	GGNNCC	4 cut(s)	109, 207, 274, 909
BspPI	GGATC	3 cut(s)	215, 571, 1371
BspT104I	TTCGAA	4 cut(s)	44, 128, 458, 1004
BspT107I	GGYRCC	2 cut(s)	107, 272
BspTNI	GGTCTC	1 cut(s)	1700
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	2 cut(s)	1090, 1415
BsrFI	RCCGGY	1 cut(s)	615
BsrI	ACTGG	3 cut(s)	111, 998, 1710
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	7 cut(s)	201, 207, 624, 653, 900, 1692, 1701
BssNI	GRCGYC	3 cut(s)	108, 273, 363
BssSI	CACGAG	2 cut(s)	914, 1722
BssT1I	CCWWGG	1 cut(s)	1692
Bst2BI	CACGAG	2 cut(s)	914, 1722
Bst2UI	CCWGG	2 cut(s)	23, 683
Bst4CI	ACNGT	5 cut(s)	38, 281, 454, 1297, 1387
Bst6I	CTCTTC	4 cut(s)	45, 712, 767, 1401
BstACI	GRCGYC	3 cut(s)	108, 273, 363
BstBAI	YACGTR	2 cut(s)	522, 1220
BstBI	TTCGAA	4 cut(s)	44, 128, 458, 1004
BstC8I	GCNNGC	5 cut(s)	621, 930, 1098, 1264, 1614
BstDSI	CCRYGG	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	340, 862, 1534
BstFNI	CGCG	4 cut(s)	252, 287, 415, 655
BstH2I	RGCGCY	3 cut(s)	111, 144, 276
BstHHI	GCGC	4 cut(s)	110, 143, 238, 275
BstMAI	GTCTC	5 cut(s)	68, 196, 335, 1130, 1700
BstMCI	CGRYCG	3 cut(s)	213, 348, 659
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 172, 877, 1250, 1259
BstNI	CCWGG	2 cut(s)	23, 683
BstNSI	RCATGY	4 cut(s)	1060, 1100, 1616, 1633
BstSCI	CCNGG	6 cut(s)	21, 201, 207, 499, 681, 900
BstUI	CGCG	4 cut(s)	252, 287, 415, 655
BstV1I	GCAGC	5 cut(s)	150, 850, 858, 1210, 1237
BstV2I	GAAGAC	1 cut(s)	417
BstXI	CCANNNNNNTGG	1 cut(s)	838
BstZI	CGGCCG	2 cut(s)	210, 656
Bsu15I	ATCGAT	1 cut(s)	1366
BsuRI	GGCC	7 cut(s)	206, 212, 623, 658, 842, 986, 1196
BsuTUI	ATCGAT	1 cut(s)	1366
BtgI	CCRYGG	1 cut(s)	653
BtrI	CACGTC	2 cut(s)	316, 838
BtsCI	GGATG	3 cut(s)	340, 862, 1534
BtuMI	TCGCGA	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	621, 930, 1098, 1264, 1614
CfoI	GCGC	4 cut(s)	110, 143, 238, 275
Cfr10I	RCCGGY	1 cut(s)	615
Cfr13I	GGNCC	5 cut(s)	25, 205, 613, 1051, 1689
Cfr42I	CCGCGG	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	1366
CpoI	CGGWCCG	1 cut(s)	613
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	289, 631, 736
CspI	CGGWCCG	1 cut(s)	613
CviAII	CATG	8 cut(s)	145, 1057, 1097, 1129, 1231, 1319, 1613, 1630
CviQI	GTAC	3 cut(s)	289, 631, 736
DinI	GGCGCC	2 cut(s)	109, 274
DraIII	CACNNNGTG	2 cut(s)	763, 919
EaeI	YGGCCR	4 cut(s)	210, 621, 656, 984
EagI	CGGCCG	2 cut(s)	210, 656
Eam1104I	CTCTTC	4 cut(s)	45, 712, 767, 1401
EarI	CTCTTC	4 cut(s)	45, 712, 767, 1401
EciI	GGCGGA	2 cut(s)	576, 639
Ecl136II	GAGCTC	3 cut(s)	384, 1066, 1731
EclXI	CGGCCG	2 cut(s)	210, 656
Eco130I	CCWWGG	1 cut(s)	1692
Eco147I	AGGCCT	1 cut(s)	1196
Eco24I	GRGCYC	4 cut(s)	11, 386, 1068, 1733
Eco31I	GGTCTC	1 cut(s)	1700
Eco47I	GGWCC	4 cut(s)	25, 613, 1051, 1689
Eco52I	CGGCCG	2 cut(s)	210, 656
Eco53kI	GAGCTC	3 cut(s)	384, 1066, 1731
Eco57I	CTGAAG	1 cut(s)	992
Eco88I	CYCGRG	2 cut(s)	844, 1067
EcoICRI	GAGCTC	3 cut(s)	384, 1066, 1731
EcoRI	GAATTC	3 cut(s)	487, 569, 1285
EcoRII	CCWGG	2 cut(s)	21, 681
EcoT14I	CCWWGG	1 cut(s)	1692
EcoT22I	ATGCAT	1 cut(s)	1090
EcoT38I	GRGCYC	4 cut(s)	11, 386, 1068, 1733
EgeI	GGCGCC	2 cut(s)	109, 274
EheI	GGCGCC	2 cut(s)	109, 274
ErhI	CCWWGG	1 cut(s)	1692
Esp3I	CGTCTC	2 cut(s)	196, 335
FaeI	CATG	8 cut(s)	148, 1060, 1100, 1132, 1234, 1322, 1616, 1633
FaqI	GGGAC	2 cut(s)	608, 959
FatI	CATG	8 cut(s)	144, 1056, 1096, 1128, 1230, 1318, 1612, 1629
FauI	CCCGC	4 cut(s)	87, 180, 306, 932
FbaI	TGATCA	2 cut(s)	528, 765
FokI	GGATG	3 cut(s)	347, 869, 1541
FriOI	GRGCYC	4 cut(s)	11, 386, 1068, 1733
FspBI	CTAG	1 cut(s)	1157
GlaI	GCGC	4 cut(s)	109, 142, 237, 274
HaeII	RGCGCY	3 cut(s)	111, 144, 276
HaeIII	GGCC	7 cut(s)	206, 212, 623, 658, 842, 986, 1196
HapII	CCGG	8 cut(s)	203, 209, 501, 551, 580, 616, 659, 902
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	4 cut(s)	110, 143, 238, 275
Hin1I	GRCGYC	3 cut(s)	108, 273, 363
Hin1II	CATG	8 cut(s)	148, 1060, 1100, 1132, 1234, 1322, 1616, 1633
Hin6I	GCGC	4 cut(s)	108, 141, 236, 273
HinP1I	GCGC	4 cut(s)	108, 141, 236, 273
HpaII	CCGG	8 cut(s)	203, 209, 501, 551, 580, 616, 659, 902
HphI	GGTGA	3 cut(s)	697, 749, 1481
Hpy166II	GTNNAC	2 cut(s)	483, 1586
Hpy8I	GTNNAC	2 cut(s)	483, 1586
Hpy99I	CGWCG	7 cut(s)	77, 124, 154, 317, 368, 538, 839
HpyAV	CCTTC	4 cut(s)	463, 781, 1042, 1630
HpyCH4III	ACNGT	5 cut(s)	38, 281, 454, 1297, 1387
HpyCH4IV	ACGT	7 cut(s)	315, 516, 521, 605, 669, 837, 1219
HpyCH4V	TGCA	8 cut(s)	691, 799, 1060, 1088, 1355, 1420, 1448, 1721
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 172, 877, 1250, 1259
HpySE526I	ACGT	7 cut(s)	315, 516, 521, 605, 669, 837, 1219
Hsp92I	GRCGYC	3 cut(s)	108, 273, 363
Hsp92II	CATG	8 cut(s)	148, 1060, 1100, 1132, 1234, 1322, 1616, 1633
HspAI	GCGC	4 cut(s)	108, 141, 236, 273
KasI	GGCGCC	2 cut(s)	107, 272
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	528, 765
KspI	CCGCGG	1 cut(s)	656
LmnI	GCTCC	7 cut(s)	389, 437, 472, 709, 913, 967, 1063
Lsp1109I	GCAGC	5 cut(s)	150, 850, 858, 1210, 1237
LweI	GCATC	4 cut(s)	678, 1097, 1457, 1519
MaeI	CTAG	1 cut(s)	1157
MaeII	ACGT	7 cut(s)	315, 516, 521, 605, 669, 837, 1219
MaeIII	GTNAC	3 cut(s)	517, 601, 1469
MbiI	CCGCTC	1 cut(s)	175
MboII	GAAGA	8 cut(s)	62, 411, 417, 634, 729, 784, 1246, 1388
MhlI	GDGCHC	4 cut(s)	11, 386, 1068, 1733
MlsI	TGGCCA	1 cut(s)	986
MluCI	AATT	8 cut(s)	130, 487, 569, 701, 1280, 1285, 1406, 1458
MluNI	TGGCCA	1 cut(s)	986
Mly113I	GGCGCC	2 cut(s)	108, 273
MlyI	GAGTC	6 cut(s)	70, 379, 488, 585, 1387, 1477
MmeI	TCCRAC	3 cut(s)	183, 312, 459
Mox20I	TGGCCA	1 cut(s)	986
Mph1103I	ATGCAT	1 cut(s)	1090
MroI	TCCGGA	1 cut(s)	550
MscI	TGGCCA	1 cut(s)	986
MseI	TTAA	1 cut(s)	1502
MslI	CAYNNNNRTG	1 cut(s)	836
Msp20I	TGGCCA	1 cut(s)	986
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	8 cut(s)	203, 209, 501, 551, 580, 616, 659, 902
MspR9I	CCNGG	6 cut(s)	23, 203, 209, 501, 683, 902
Mva1269I	GAATGC	2 cut(s)	855, 1355
MvaI	CCWGG	2 cut(s)	23, 683
MvnI	CGCG	4 cut(s)	252, 287, 415, 655
MwoI	GCNNNNNNNGC	5 cut(s)	105, 172, 877, 1250, 1259
NarI	GGCGCC	2 cut(s)	108, 273
NciI	CCSGG	4 cut(s)	203, 209, 501, 902
NlaIII	CATG	8 cut(s)	148, 1060, 1100, 1132, 1234, 1322, 1616, 1633
NlaIV	GGNNCC	4 cut(s)	109, 207, 274, 909
NmeAIII	GCCGAG	3 cut(s)	649, 1693, 1726
NmuCI	GTSAC	3 cut(s)	517, 601, 1469
NruI	TCGCGA	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	1090
NspI	RCATGY	4 cut(s)	1060, 1100, 1616, 1633
NspV	TTCGAA	4 cut(s)	44, 128, 458, 1004
OliI	CACNNNNGTG	1 cut(s)	836
PaeI	GCATGC	2 cut(s)	1100, 1616
PaeR7I	CTCGAG	2 cut(s)	844, 1067
PceI	AGGCCT	1 cut(s)	1196
PciI	ACATGT	1 cut(s)	1629
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 125, 419, 539
PctI	GAATGC	2 cut(s)	855, 1355
PfeI	GAWTC	4 cut(s)	215, 460, 1103, 1563
Pfl23II	CGTACG	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	993
PfoI	TCCNGGA	1 cut(s)	499
Ple19I	CGATCG	1 cut(s)	348
PleI	GAGTC	6 cut(s)	69, 378, 487, 584, 1387, 1477
PluTI	GGCGCC	2 cut(s)	111, 276
PpsI	GAGTC	6 cut(s)	69, 378, 487, 584, 1387, 1477
Ppu21I	YACGTR	2 cut(s)	522, 1220
PscI	ACATGT	1 cut(s)	1629
PsiI	TTATAA	1 cut(s)	1166
Psp124BI	GAGCTC	3 cut(s)	386, 1068, 1733
Psp6I	CCWGG	2 cut(s)	21, 681
PspGI	CCWGG	2 cut(s)	21, 681
PspLI	CGTACG	1 cut(s)	288
PspN4I	GGNNCC	4 cut(s)	109, 207, 274, 909
PspPI	GGNCC	5 cut(s)	25, 205, 613, 1051, 1689
PspXI	VCTCGAGB	1 cut(s)	1067
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PvuI	CGATCG	1 cut(s)	348
RruI	TCGCGA	1 cut(s)	415
RsaI	GTAC	3 cut(s)	290, 632, 737
RsaNI	GTAC	3 cut(s)	289, 631, 736
RseI	CAYNNNNRTG	1 cut(s)	836
Rsr2I	CGGWCCG	1 cut(s)	613
RsrII	CGGWCCG	1 cut(s)	613
SacI	GAGCTC	3 cut(s)	386, 1068, 1733
SacII	CCGCGG	1 cut(s)	656
SaqAI	TTAA	1 cut(s)	1502
Sau96I	GGNCC	5 cut(s)	25, 205, 613, 1051, 1689
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	6 cut(s)	70, 379, 488, 585, 1387, 1477
ScrFI	CCNGG	6 cut(s)	23, 203, 209, 501, 683, 902
SduI	GDGCHC	4 cut(s)	11, 386, 1068, 1733
SfaNI	GCATC	4 cut(s)	678, 1097, 1457, 1519
SfoI	GGCGCC	2 cut(s)	109, 274
Sfr274I	CTCGAG	2 cut(s)	844, 1067
Sfr303I	CCGCGG	1 cut(s)	656
SfuI	TTCGAA	4 cut(s)	44, 128, 458, 1004
SgrBI	CCGCGG	1 cut(s)	656
SinI	GGWCC	4 cut(s)	25, 613, 1051, 1689
SlaI	CTCGAG	2 cut(s)	844, 1067
SmiMI	CAYNNNNRTG	1 cut(s)	836
SmlI	CTYRAG	5 cut(s)	739, 844, 1067, 1493, 1589
SmoI	CTYRAG	5 cut(s)	739, 844, 1067, 1493, 1589
SphI	GCATGC	2 cut(s)	1100, 1616
Sse9I	AATT	8 cut(s)	130, 487, 569, 701, 1280, 1285, 1406, 1458
SseBI	AGGCCT	1 cut(s)	1196
SspDI	GGCGCC	2 cut(s)	107, 272
SspMI	CTAG	1 cut(s)	1157
SstI	GAGCTC	3 cut(s)	386, 1068, 1733
StuI	AGGCCT	1 cut(s)	1196
StyD4I	CCNGG	6 cut(s)	21, 201, 207, 499, 681, 900
StyI	CCWWGG	1 cut(s)	1692
TaaI	ACNGT	5 cut(s)	38, 281, 454, 1297, 1387
TaiI	ACGT	7 cut(s)	318, 519, 524, 608, 672, 840, 1222
TasI	AATT	8 cut(s)	130, 487, 569, 701, 1280, 1285, 1406, 1458
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	7 cut(s)	85, 108, 586, 655, 658, 755, 1012
TfiI	GAWTC	4 cut(s)	215, 460, 1103, 1563
Tru1I	TTAA	1 cut(s)	1502
Tru9I	TTAA	1 cut(s)	1502
TseFI	GTSAC	3 cut(s)	517, 601, 1469
TseI	GCWGC	5 cut(s)	138, 863, 871, 1223, 1250
Tsp45I	GTSAC	3 cut(s)	517, 601, 1469
TspDTI	ATGAA	6 cut(s)	458, 634, 1247, 1404, 1521, 1637
TspGWI	ACGGA	3 cut(s)	318, 807, 1333
Van91I	CCANNNNNTGG	1 cut(s)	993
VpaK11BI	GGWCC	4 cut(s)	25, 613, 1051, 1689
XapI	RAATTY	5 cut(s)	487, 569, 701, 1285, 1458
XceI	RCATGY	4 cut(s)	1060, 1100, 1616, 1633
XcmI	CCANNNNNNNNNTGG	2 cut(s)	35, 1325
XhoI	CTCGAG	2 cut(s)	844, 1067
XspI	CTAG	1 cut(s)	1157
ZrmI	AGTACT	1 cut(s)	737
Zsp2I	ATGCAT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.