Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010972

Physical Location & Seq

Genomic Coordinates Forward (+)

57243195 .. 57244133

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0414000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCCGTCATCCTCGCTGCCATCGCAATCTCTATGACCCTCCGCTCCGACCCCACTGCCCAAACCCCCAAATCCGCCACACCCATCAGCCACGTCATCTCTCTTAGCGCCTCAAGAACTCTCCGGGCCTTTGGCTTCACCGTCACGGCGACATTCCTCCAAATCTGGCCGGAGCTCTTCCTCTCCTCGCCGAACTCCACCATCTTCGCAATCGCCAATTCCCACATCTCCAACGCCTCTCTACCTCCTCACCTCCTCAGAGACCTCCTCAAATACCACACCTCTCCAGTTAGGGTTTCGATCGAAGACCTGATGGAGAAGCCTCAAGGATCCGCTTCGATTCACGGCGTTCTTGGCCCCTTCGCGGTTGTGGATCCCGATTATGACGTCATTCACGTGCCTGTGTGCGACTCCAATTTGAGTGTTGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATATGGAATGTGGTCGAATTGTTCGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGTTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGCCACCAAGATTGGCGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTTTCACATTATGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCCTTGCCTACGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTTTCTGAGCTGAGAGAGAGTGAGAGGGGAGCAGAAAAAATAACAAAAAAAAGAGAGAGAAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

272

Amino Acids

29.86

Weight (kDa)

9.89

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07120 AT5G07120 AT5G07120 AT5G58440
fragaria_vesca	FvH4_3g39770
malus_domestica	MD03G1056600.v1.1 MD11G1058400.v1.1
prunus_persica	Prupe.6G048200_v2.0.a1
pyrus_communis	pycom11g04840
rosa_chinensis	RchiOBHm_Chr5g0071651
rosa_laevigata	RLG00000036238
rosa_multiflora	Rmu_sc0002060.1_g000020 Rmu_sc0005745.1_g000035 Rmu_sc0006567.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009520
rosa_rugosa	Rorug05G0414000
rosa_samantha	Rh5BG489500 Rh5CG513300 Rh5DG500300
rosa_wichuraiana	Rw5G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	365
AciI	CCGC	4 cut(s)	43, 75, 333, 365
AclWI	GGATC	4 cut(s)	324, 337, 368, 381
AcoI	YGGCCR	2 cut(s)	3, 167
AcsI	RAATTY	1 cut(s)	813
AcvI	CACGTG	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	448, 557
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	6 cut(s)	175, 498, 576, 617, 694, 760
AluI	AGCT	6 cut(s)	175, 498, 576, 617, 694, 760
Alw21I	GWGCWC	4 cut(s)	177, 500, 578, 619
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	4 cut(s)	324, 337, 368, 381
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	5 cut(s)	3, 126, 167, 355, 699
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	813
AspLEI	GCGC	2 cut(s)	110, 610
AspS9I	GGNCC	2 cut(s)	126, 356
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	130, 242, 752
AvaI	CYCGRG	1 cut(s)	630
BamHI	GGATCC	2 cut(s)	329, 373
BanII	GRGCYC	4 cut(s)	177, 500, 578, 619
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	4 cut(s)	177, 500, 578, 619
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	5 cut(s)	29, 92, 209, 307, 539
BceAI	ACGGC	3 cut(s)	162, 361, 499
BcgI	CGANNNNNNTGC	4 cut(s)	38, 72, 700, 734
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	255
BfoI	RGCGCY	2 cut(s)	111, 611
BglI	GCCNNNNNGGC	1 cut(s)	676
BisI	GCNGC	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	630
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	126, 356
BmiI	GGNNCC	3 cut(s)	331, 358, 375
BmrFI	CCNGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	722
Bpu1102I	GCTNAGC	1 cut(s)	494
BpuEI	CTTGAG	3 cut(s)	97, 309, 662
BpuMI	CCSGG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	629
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	2 cut(s)	9, 625
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	6 cut(s)	271, 485, 686, 736, 747, 752
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	4 cut(s)	175, 237, 245, 257
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	5 cut(s)	5, 128, 169, 357, 701
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	4 cut(s)	177, 500, 578, 619
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	2 cut(s)	124, 170
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	5 cut(s)	5, 128, 169, 357, 701
Bso31I	GGTCTC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	4 cut(s)	177, 500, 578, 619
Bsp143I	GATC	4 cut(s)	300, 329, 373, 742
Bsp1720I	GCTNAGC	1 cut(s)	494
BspACI	CCGC	4 cut(s)	43, 75, 333, 365
BspANI	GGCC	5 cut(s)	5, 128, 169, 357, 701
BspCNI	CTCAG	6 cut(s)	270, 486, 685, 735, 748, 753
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	331, 358, 375
BspPI	GGATC	4 cut(s)	324, 337, 368, 381
BspQI	GCTCTTC	2 cut(s)	182, 452
BspTNI	GGTCTC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	4 cut(s)	300, 329, 373, 742
BssNI	GRCGYC	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	182, 452
BstACI	GRCGYC	1 cut(s)	387
BstBAI	YACGTR	1 cut(s)	397
BstDEI	CTNAG	7 cut(s)	104, 257, 494, 672, 722, 756, 761
BstF5I	GGATG	2 cut(s)	9, 625
BstFNI	CGCG	1 cut(s)	365
BstH2I	RGCGCY	2 cut(s)	111, 611
BstHHI	GCGC	2 cut(s)	110, 610
BstKTI	GATC	4 cut(s)	303, 332, 376, 745
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	300, 329, 373, 742
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 354, 614, 676
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	329, 373
BstYI	RGATCY	2 cut(s)	329, 373
BsuRI	GGCC	5 cut(s)	5, 128, 169, 357, 701
BtgZI	GCGATG	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	9, 625
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
CfoI	GCGC	2 cut(s)	110, 610
Cfr13I	GGNCC	2 cut(s)	126, 356
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	1 cut(s)	737
DdeI	CTNAG	7 cut(s)	104, 257, 494, 672, 722, 756, 761
DpnI	GATC	4 cut(s)	302, 331, 375, 744
DpnII	GATC	4 cut(s)	300, 329, 373, 742
EaeI	YGGCCR	2 cut(s)	3, 167
Eam1104I	CTCTTC	2 cut(s)	182, 452
EarI	CTCTTC	2 cut(s)	182, 452
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	4 cut(s)	175, 498, 576, 617
Eco24I	GRGCYC	4 cut(s)	177, 500, 578, 619
Eco31I	GGTCTC	1 cut(s)	255
Eco53kI	GAGCTC	4 cut(s)	175, 498, 576, 617
Eco72I	CACGTG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	630
EcoICRI	GAGCTC	4 cut(s)	175, 498, 576, 617
EcoT38I	GRGCYC	4 cut(s)	177, 500, 578, 619
FaeI	CATG	1 cut(s)	740
FaiI	YATR	6 cut(s)	35, 384, 467, 668, 731, 738
FatI	CATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	4 cut(s)	177, 500, 578, 619
Fsp4HI	GCNGC	1 cut(s)	18
GlaI	GCGC	2 cut(s)	109, 609
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	2 cut(s)	111, 611
HaeIII	GGCC	5 cut(s)	5, 128, 169, 357, 701
HapII	CCGG	2 cut(s)	124, 170
HhaI	GCGC	2 cut(s)	110, 610
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	740
Hin6I	GCGC	2 cut(s)	108, 608
HinP1I	GCGC	2 cut(s)	108, 608
HinfI	GANTC	4 cut(s)	340, 410, 550, 715
HpaII	CCGG	2 cut(s)	124, 170
HphI	GGTGA	3 cut(s)	130, 242, 752
Hpy188I	TCNGA	4 cut(s)	49, 260, 675, 757
Hpy188III	TCNNGA	5 cut(s)	114, 377, 542, 554, 724
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	3 cut(s)	93, 387, 396
HpyCH4V	TGCA	2 cut(s)	521, 532
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 354, 614, 676
HpyF3I	CTNAG	7 cut(s)	104, 257, 494, 672, 722, 756, 761
HpySE526I	ACGT	3 cut(s)	93, 387, 396
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	740
HspAI	GCGC	2 cut(s)	108, 608
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	300, 329, 373, 742
LguI	GCTCTTC	2 cut(s)	182, 452
LmnI	GCTCC	5 cut(s)	50, 172, 614, 691, 779
Lsp1109I	GCAGC	1 cut(s)	4
MaeII	ACGT	3 cut(s)	93, 387, 396
MaeIII	GTNAC	2 cut(s)	142, 580
MalI	GATC	4 cut(s)	302, 331, 375, 744
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	300, 329, 373, 742
MboII	GAAGA	9 cut(s)	169, 196, 317, 460, 463, 466, 469, 569, 658
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	329, 373
MhlI	GDGCHC	4 cut(s)	177, 500, 578, 619
MluCI	AATT	5 cut(s)	217, 415, 480, 522, 813
MlyI	GAGTC	2 cut(s)	404, 709
MmeI	TCCRAC	2 cut(s)	72, 255
MseI	TTAA	1 cut(s)	817
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	2 cut(s)	124, 170
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	532
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	4 cut(s)	23, 354, 614, 676
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	4 cut(s)	300, 329, 373, 742
NlaIII	CATG	1 cut(s)	740
NlaIV	GGNNCC	3 cut(s)	331, 358, 375
NmuCI	GTSAC	2 cut(s)	142, 580
PciSI	GCTCTTC	2 cut(s)	182, 452
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	340, 550
PkrI	GCNGC	1 cut(s)	19
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	2 cut(s)	404, 709
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	404, 709
Ppu21I	YACGTR	1 cut(s)	397
Psp124BI	GAGCTC	4 cut(s)	177, 500, 578, 619
PspCI	CACGTG	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	331, 358, 375
PspPI	GGNCC	2 cut(s)	126, 356
PsuI	RGATCY	2 cut(s)	329, 373
PvuI	CGATCG	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	4 cut(s)	177, 500, 578, 619
SapI	GCTCTTC	2 cut(s)	182, 452
SaqAI	TTAA	1 cut(s)	817
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	4 cut(s)	300, 329, 373, 742
Sau96I	GGNCC	2 cut(s)	126, 356
SchI	GAGTC	2 cut(s)	404, 709
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	4 cut(s)	177, 500, 578, 619
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	3 cut(s)	112, 324, 641
SmoI	CTYRAG	3 cut(s)	112, 324, 641
Sse9I	AATT	5 cut(s)	217, 415, 480, 522, 813
SsiI	CCGC	4 cut(s)	43, 75, 333, 365
SstI	GAGCTC	4 cut(s)	177, 500, 578, 619
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	3 cut(s)	96, 390, 399
TaqI	TCGA	4 cut(s)	299, 303, 338, 478
TasI	AATT	5 cut(s)	217, 415, 480, 522, 813
TfiI	GAWTC	2 cut(s)	340, 550
Tru1I	TTAA	1 cut(s)	817
Tru9I	TTAA	1 cut(s)	817
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	2 cut(s)	142, 580
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	142, 580
TspDTI	ATGAA	1 cut(s)	725
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	813
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.