Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010972

Physical Location & Seq

Genomic Coordinates Forward (+)

77914976 .. 77918646

Gene Structure 3671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG489500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGATGGGCTCTGAGAACCACCAGGACCATCAATACGGTGGTTCGAAAGAAGAGATGGAGAGTCTCGTCCTCGACGACCCGCTGCCGTTGAACAACGGCGGCGCCAGTAAATCGTCGTATTCGAATTACCGCAGCGCCATGTCGTCGCTTTCCGACACGCACCACCCGCTCTCGTCTATAATCGTCTCCACGACCCCGGCCCCGGCCGAATCCGATCCGCTTCTGACTGCGCCACCGCCGTTCCGCGATCTCCGAAACCCTAACGGCGCCGACAGCTCCGCGTACGTCGACCCGCCCTCTTACGGCGACGTGGTTTTCAGTCCGTTGGATGGCGAGACGATCGGCGAAATCAACGGCGTCGAGAGCCCGAGCAAGAGCTCCGACCATTCCAGCTCTTATTCGCTTTCGCGATCTTCGTCGTCCAGCTCCGACTATATCAAAATCACGGTTTCGAATCCTCAGAAGGAGCAGGAGTCCACGAATTCAGTTATTCCCGGAGGGAATACTTACGTCACGTATCTGATCACGACGAGGACGAACATTCCGGAGTTCGGCGGCTCGGAATTTGGCGTCCGGCGGCGGTTTCGGGACATTGTGACGTTATCGGACCGGCTGGCGGAGGCGTACAGAGGCTTCTTCATTCCGCCGCGGCCGGATAAGAACGTGGTGGAGAGCCAGGTGATGCAGAAACAAGAGTTTGTGGAGCAGAGGAGAGTGGCATTGGAGAAGTACTTGAGGCGGTTAGCGGCTCACCCTGTGATCAAGAAGAGTGATGAGTTGAAGGTGTTTCTGCAAGTTCAGGGGAGGTTTCCGTTGCCGATGACCACCGACGTGGCGTCGAGAATGCTGGATGGGGCTGCTAAGCTGCCGAAGCAGTTGTTCGGCGAGAGTTCCCCGGTGGCTCCACACGAGGTGGTTCAGCCGGCGAAAGGCGGGAGGGACTTGCTGAGGTTATTCAAGGAGCTGAAGCAGTCTGTGGCCAATGACTGGGGAGGTTCGAAGCCGCTTGTGGGAGAGGAGGATAAGGAGTTTATGGAAAAGAAAGACCACATGCAGGAGCTCGAGCTACAACTCAGCAATGCATCCCAGCATGCTGAATCACTTGTAAAAGCTCAACAAGACATGGGAGAGACTATGGGAGAGTTAGGACTAGCATTTATAAAACTGACTAAGTTTGAAAATGAGGAGGCCTTGTTCAACTCTCAAAGAATACGTGCTGCTGACATGAAGAATGTGGCGACTGCTGCTGTAAAAGCCAGCAGATACTATCGAGAATTGAATTCTCAGACTGTCAAACATTTGGACACATTCCATGAGTATCTTGGGCTAATGTTATCCGTCAAAGGTGCATTCTCGGATCGATCAAGTGCTTTATTGACTGTTCAGACTCTTCTATCAGAATTGGGTTCATTGCAGTCGAGGGCTGAAAAACTTGAAGTTGCATCGAACAAAATTTTTGGTGGTGACAAATCAAGGACTCGCAAACTAGAGGAGTTAAATGATACCATAAGAGCTACTGAGGATGCTAAGAATATAGCAATCAGAGAATATGAGAGAATCAAGGAGAACAACAGAAGTGAACTTGAGAGGCTTGACAGCGAGAGGCATGCTGACTTCTTGAACATGTTGAAGGGGTTTGTTCATAATCAGGTGGGATATGCCGAGAAAATAGCAAATGTGTGGTCCAAGGTTGCCGAGGAGACCAGTTCGTATGCACGAGAGAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

576

Amino Acids

64.09

Weight (kDa)

5.76

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	183 - 266	3.9e-18	PX domain
Vps5	PF09325	334 - 566	8.9e-21	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07120 AT5G07120 AT5G07120 AT5G58440
fragaria_vesca	FvH4_3g39770
malus_domestica	MD03G1056600.v1.1 MD11G1058400.v1.1
prunus_persica	Prupe.6G048200_v2.0.a1
pyrus_communis	pycom11g04840
rosa_chinensis	RchiOBHm_Chr5g0071651
rosa_laevigata	RLG00000036238
rosa_multiflora	Rmu_sc0002060.1_g000020 Rmu_sc0005745.1_g000035 Rmu_sc0006567.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009520
rosa_rugosa	Rorug05G0414000
rosa_samantha	Rh5BG489500 Rh5CG513300 Rh5DG500300
rosa_wichuraiana	Rw5G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1160
AccB1I	GGYRCC	2 cut(s)	101, 266
AccB7I	CCANNNNNTGG	1 cut(s)	987
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	4 cut(s)	246, 281, 409, 649
AccIII	TCCGGA	1 cut(s)	544
AclWI	GGATC	2 cut(s)	209, 1365
AcoI	YGGCCR	3 cut(s)	204, 650, 978
AcsI	RAATTY	4 cut(s)	481, 563, 1279, 1452
AcuI	CTGAAG	1 cut(s)	986
AcyI	GRCGYC	5 cut(s)	102, 267, 357, 570, 836
AdeI	CACNNNGTG	2 cut(s)	757, 913
AfaI	GTAC	3 cut(s)	284, 626, 731
AfiI	CCNNNNNNNGG	9 cut(s)	202, 302, 329, 551, 616, 929, 987, 1010, 1054
AflIII	ACRYGT	1 cut(s)	1623
AgsI	TTSAA	9 cut(s)	91, 781, 958, 1178, 1198, 1279, 1436, 1621, 1630
AhdI	GACNNNNNGTC	1 cut(s)	835
AjiI	CACGTC	2 cut(s)	310, 832
AjnI	CCWGG	2 cut(s)	21, 675
AleI	CACNNNNGTG	1 cut(s)	830
AloI	GAACNNNNNNTCC	2 cut(s)	1178, 1210
Alw21I	GWGCWC	3 cut(s)	380, 1062, 1727
Alw26I	GTCTC	5 cut(s)	68, 190, 329, 1124, 1694
AlwI	GGATC	2 cut(s)	209, 1365
Ama87I	CYCGRG	2 cut(s)	367, 1061
Aor13HI	TCCGGA	1 cut(s)	544
AoxI	GGCC	5 cut(s)	198, 204, 650, 978, 1188
ApeKI	GCWGC	6 cut(s)	82, 132, 857, 865, 1217, 1244
ApoI	RAATTY	4 cut(s)	481, 563, 1279, 1452
ArsI	GACNNNNNNTTYG	2 cut(s)	1667, 1699
AspLEI	GCGC	4 cut(s)	104, 137, 232, 269
AspS9I	GGNCC	4 cut(s)	25, 199, 607, 1683
AsuC2I	CCSGG	4 cut(s)	197, 203, 495, 896
AsuHPI	GGTGA	3 cut(s)	691, 743, 1475
AsuII	TTCGAA	4 cut(s)	44, 122, 452, 998
AvaI	CYCGRG	2 cut(s)	367, 1061
AvaII	GGWCC	3 cut(s)	25, 607, 1683
BalI	TGGCCA	1 cut(s)	980
BanI	GGYRCC	2 cut(s)	101, 266
BanII	GRGCYC	5 cut(s)	11, 368, 380, 1062, 1727
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BauI	CACGAG	2 cut(s)	908, 1716
Bbv12I	GWGCWC	3 cut(s)	380, 1062, 1727
BbvCI	CCTCAGC	1 cut(s)	947
BbvI	GCAGC	6 cut(s)	69, 144, 844, 852, 1204, 1231
BccI	CCATC	4 cut(s)	36, 49, 323, 845
BceAI	ACGGC	6 cut(s)	70, 112, 223, 280, 319, 370
BcgI	CGANNNNNNTGC	2 cut(s)	1589, 1623
BciT130I	CCWGG	2 cut(s)	23, 677
BclI	TGATCA	2 cut(s)	522, 759
BcnI	CCSGG	4 cut(s)	197, 203, 495, 896
BcoDI	GTCTC	5 cut(s)	68, 190, 329, 1124, 1694
BfaI	CTAG	2 cut(s)	1151, 1487
BfoI	RGCGCY	3 cut(s)	105, 138, 270
BlpI	GCTNAGC	1 cut(s)	861
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	6 cut(s)	23, 197, 203, 495, 677, 896
Bme18I	GGWCC	3 cut(s)	25, 607, 1683
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmeT110I	CYCGRG	2 cut(s)	367, 1061
BmgBI	CACGTC	2 cut(s)	310, 832
BmgT120I	GGNCC	4 cut(s)	25, 199, 607, 1683
BmiI	GGNNCC	4 cut(s)	103, 201, 268, 903
BmrFI	CCNGG	6 cut(s)	23, 197, 203, 495, 677, 896
BmrI	ACTGGG	1 cut(s)	997
BmsI	GCATC	4 cut(s)	672, 1091, 1451, 1513
BmuI	ACTGGG	1 cut(s)	997
Bpu10I	CCTNAGC	1 cut(s)	947
Bpu1102I	GCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	4 cut(s)	44, 122, 452, 998
BpuEI	CTTGAG	2 cut(s)	754, 1604
BpuMI	CCSGG	4 cut(s)	197, 203, 495, 896
Bsa29I	ATCGAT	1 cut(s)	1360
BsaAI	YACGTR	2 cut(s)	516, 1214
BsaHI	GRCGYC	5 cut(s)	102, 267, 357, 570, 836
BsaI	GGTCTC	1 cut(s)	1694
BsaJI	CCNNGG	6 cut(s)	195, 201, 647, 894, 1686, 1695
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 1178, 1208
Bsc4I	CCNNNNNNNGG	9 cut(s)	202, 302, 329, 551, 616, 929, 987, 1010, 1054
Bse118I	RCCGGY	2 cut(s)	609, 922
Bse1I	ACTGG	3 cut(s)	105, 992, 1704
Bse3DI	GCAATG	2 cut(s)	1084, 1409
BseAI	TCCGGA	1 cut(s)	544
BseBI	CCWGG	2 cut(s)	23, 677
BseCI	ATCGAT	1 cut(s)	1360
BseDI	CCNNGG	6 cut(s)	195, 201, 647, 894, 1686, 1695
BseGI	GGATG	4 cut(s)	334, 856, 1082, 1528
BseLI	CCNNNNNNNGG	9 cut(s)	202, 302, 329, 551, 616, 929, 987, 1010, 1054
BseMI	GCAATG	2 cut(s)	1084, 1409
BseMII	CTCAG	5 cut(s)	473, 938, 1087, 1298, 1509
BseNI	ACTGG	3 cut(s)	105, 992, 1704
BseRI	GAGGAG	5 cut(s)	724, 1031, 1199, 1505, 1712
BseX3I	CGGCCG	2 cut(s)	204, 650
BseXI	GCAGC	6 cut(s)	69, 144, 844, 852, 1204, 1231
BseYI	CCCAGC	1 cut(s)	1086
Bsh1236I	CGCG	4 cut(s)	246, 281, 409, 649
Bsh1285I	CGRYCG	3 cut(s)	207, 342, 653
BshFI	GGCC	5 cut(s)	200, 206, 652, 980, 1190
BshNI	GGYRCC	2 cut(s)	101, 266
BshVI	ATCGAT	1 cut(s)	1360
BsiEI	CGRYCG	3 cut(s)	207, 342, 653
BsiHKAI	GWGCWC	3 cut(s)	380, 1062, 1727
BsiHKCI	CYCGRG	2 cut(s)	367, 1061
BsiSI	CCGG	9 cut(s)	197, 203, 495, 545, 574, 610, 653, 896, 923
BsiWI	CGTACG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	602, 953
BslI	CCNNNNNNNGG	9 cut(s)	202, 302, 329, 551, 616, 929, 987, 1010, 1054
BsmAI	GTCTC	5 cut(s)	68, 190, 329, 1124, 1694
BsmBI	CGTCTC	2 cut(s)	190, 329
BsmFI	GGGAC	2 cut(s)	602, 953
BsmI	GAATGC	2 cut(s)	849, 1349
BsnI	GGCC	5 cut(s)	200, 206, 652, 980, 1190
Bso31I	GGTCTC	1 cut(s)	1694
BsoBI	CYCGRG	2 cut(s)	367, 1061
Bsp119I	TTCGAA	4 cut(s)	44, 122, 452, 998
Bsp1286I	GDGCHC	5 cut(s)	11, 368, 380, 1062, 1727
Bsp13I	TCCGGA	1 cut(s)	544
Bsp143I	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
Bsp1720I	GCTNAGC	1 cut(s)	861
Bsp68I	TCGCGA	1 cut(s)	409
BspANI	GGCC	5 cut(s)	200, 206, 652, 980, 1190
BspCNI	CTCAG	6 cut(s)	4, 472, 939, 1086, 1297, 1510
BspDI	ATCGAT	1 cut(s)	1360
BspEI	TCCGGA	1 cut(s)	544
BspFNI	CGCG	4 cut(s)	246, 281, 409, 649
BspLI	GGNNCC	4 cut(s)	103, 201, 268, 903
BspPI	GGATC	2 cut(s)	209, 1365
BspT104I	TTCGAA	4 cut(s)	44, 122, 452, 998
BspT107I	GGYRCC	2 cut(s)	101, 266
BspTNI	GGTCTC	1 cut(s)	1694
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	1084, 1409
BsrFI	RCCGGY	2 cut(s)	609, 922
BsrI	ACTGG	3 cut(s)	105, 992, 1704
BssAI	RCCGGY	2 cut(s)	609, 922
BssECI	CCNNGG	6 cut(s)	195, 201, 647, 894, 1686, 1695
BssMI	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
BssNI	GRCGYC	5 cut(s)	102, 267, 357, 570, 836
BssSI	CACGAG	2 cut(s)	908, 1716
BssT1I	CCWWGG	1 cut(s)	1686
Bst2BI	CACGAG	2 cut(s)	908, 1716
Bst2UI	CCWGG	2 cut(s)	23, 677
Bst4CI	ACNGT	4 cut(s)	38, 448, 1291, 1381
Bst6I	CTCTTC	3 cut(s)	45, 761, 1395
BstACI	GRCGYC	5 cut(s)	102, 267, 357, 570, 836
BstBAI	YACGTR	2 cut(s)	516, 1214
BstBI	TTCGAA	4 cut(s)	44, 122, 452, 998
BstC8I	GCNNGC	5 cut(s)	615, 924, 1092, 1258, 1608
BstDEI	CTNAG	9 cut(s)	12, 459, 861, 947, 1073, 1170, 1284, 1518, 1527
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	4 cut(s)	334, 856, 1082, 1528
BstFNI	CGCG	4 cut(s)	246, 281, 409, 649
BstH2I	RGCGCY	3 cut(s)	105, 138, 270
BstHHI	GCGC	4 cut(s)	104, 137, 232, 269
BstKTI	GATC	8 cut(s)	217, 250, 342, 413, 525, 762, 1360, 1364
BstMAI	GTCTC	5 cut(s)	68, 190, 329, 1124, 1694
BstMBI	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
BstMCI	CGRYCG	3 cut(s)	207, 342, 653
BstMWI	GCNNNNNNNGC	6 cut(s)	166, 273, 363, 871, 1244, 1253
BstNI	CCWGG	2 cut(s)	23, 677
BstNSI	RCATGY	4 cut(s)	1054, 1094, 1610, 1627
BstSCI	CCNGG	6 cut(s)	21, 195, 201, 493, 675, 894
BstUI	CGCG	4 cut(s)	246, 281, 409, 649
BstV1I	GCAGC	6 cut(s)	69, 144, 844, 852, 1204, 1231
BstXI	CCANNNNNNTGG	1 cut(s)	832
BstZI	CGGCCG	2 cut(s)	204, 650
Bsu15I	ATCGAT	1 cut(s)	1360
BsuRI	GGCC	5 cut(s)	200, 206, 652, 980, 1190
BsuTUI	ATCGAT	1 cut(s)	1360
BtgI	CCRYGG	1 cut(s)	647
BtrI	CACGTC	2 cut(s)	310, 832
BtsCI	GGATG	4 cut(s)	334, 856, 1082, 1528
BtuMI	TCGCGA	1 cut(s)	409
Cac8I	GCNNGC	5 cut(s)	615, 924, 1092, 1258, 1608
CfoI	GCGC	4 cut(s)	104, 137, 232, 269
Cfr10I	RCCGGY	2 cut(s)	609, 922
Cfr13I	GGNCC	4 cut(s)	25, 199, 607, 1683
Cfr42I	CCGCGG	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	1360
CpoI	CGGWCCG	1 cut(s)	607
CseI	GACGC	3 cut(s)	346, 559, 825
Csp6I	GTAC	3 cut(s)	283, 625, 730
CspI	CGGWCCG	1 cut(s)	607
CviAII	CATG	8 cut(s)	139, 1051, 1091, 1123, 1225, 1313, 1607, 1624
CviQI	GTAC	3 cut(s)	283, 625, 730
DdeI	CTNAG	9 cut(s)	12, 459, 861, 947, 1073, 1170, 1284, 1518, 1527
DinI	GGCGCC	2 cut(s)	103, 268
DpnI	GATC	8 cut(s)	216, 249, 341, 412, 524, 761, 1359, 1363
DpnII	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
DraIII	CACNNNGTG	2 cut(s)	757, 913
DriI	GACNNNNNGTC	1 cut(s)	835
EaeI	YGGCCR	3 cut(s)	204, 650, 978
EagI	CGGCCG	2 cut(s)	204, 650
Eam1104I	CTCTTC	3 cut(s)	45, 761, 1395
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	3 cut(s)	45, 761, 1395
EciI	GGCGGA	2 cut(s)	632, 633
Ecl136II	GAGCTC	3 cut(s)	378, 1060, 1725
EclXI	CGGCCG	2 cut(s)	204, 650
Eco130I	CCWWGG	1 cut(s)	1686
Eco147I	AGGCCT	1 cut(s)	1190
Eco24I	GRGCYC	5 cut(s)	11, 368, 380, 1062, 1727
Eco31I	GGTCTC	1 cut(s)	1694
Eco47I	GGWCC	3 cut(s)	25, 607, 1683
Eco52I	CGGCCG	2 cut(s)	204, 650
Eco53kI	GAGCTC	3 cut(s)	378, 1060, 1725
Eco57I	CTGAAG	1 cut(s)	986
Eco88I	CYCGRG	2 cut(s)	367, 1061
EcoICRI	GAGCTC	3 cut(s)	378, 1060, 1725
EcoRI	GAATTC	2 cut(s)	481, 1279
EcoRII	CCWGG	2 cut(s)	21, 675
EcoT14I	CCWWGG	1 cut(s)	1686
EcoT22I	ATGCAT	1 cut(s)	1084
EcoT38I	GRGCYC	5 cut(s)	11, 368, 380, 1062, 1727
EgeI	GGCGCC	2 cut(s)	103, 268
EheI	GGCGCC	2 cut(s)	103, 268
ErhI	CCWWGG	1 cut(s)	1686
Esp3I	CGTCTC	2 cut(s)	190, 329
FaeI	CATG	8 cut(s)	142, 1054, 1094, 1126, 1228, 1316, 1610, 1627
FaqI	GGGAC	2 cut(s)	602, 953
FatI	CATG	8 cut(s)	138, 1050, 1090, 1122, 1224, 1312, 1606, 1623
FauI	CCCGC	4 cut(s)	87, 174, 300, 926
FbaI	TGATCA	2 cut(s)	522, 759
FblI	GTMKAC	1 cut(s)	288
FokI	GGATG	4 cut(s)	341, 863, 1069, 1535
FriOI	GRGCYC	5 cut(s)	11, 368, 380, 1062, 1727
FspBI	CTAG	2 cut(s)	1151, 1487
GlaI	GCGC	4 cut(s)	103, 136, 231, 268
GsaI	CCCAGC	1 cut(s)	1090
HaeII	RGCGCY	3 cut(s)	105, 138, 270
HaeIII	GGCC	5 cut(s)	200, 206, 652, 980, 1190
HapII	CCGG	9 cut(s)	197, 203, 495, 545, 574, 610, 653, 896, 923
HgaI	GACGC	3 cut(s)	346, 559, 825
HhaI	GCGC	4 cut(s)	104, 137, 232, 269
Hin1I	GRCGYC	5 cut(s)	102, 267, 357, 570, 836
Hin1II	CATG	8 cut(s)	142, 1054, 1094, 1126, 1228, 1316, 1610, 1627
Hin6I	GCGC	4 cut(s)	102, 135, 230, 267
HinP1I	GCGC	4 cut(s)	102, 135, 230, 267
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	8 cut(s)	61, 209, 454, 473, 1097, 1387, 1477, 1557
HpaII	CCGG	9 cut(s)	197, 203, 495, 545, 574, 610, 653, 896, 923
HphI	GGTGA	3 cut(s)	691, 743, 1475
Hpy166II	GTNNAC	3 cut(s)	289, 477, 1580
Hpy8I	GTNNAC	3 cut(s)	289, 477, 1580
HpyAV	CCTTC	3 cut(s)	457, 775, 1624
HpyCH4III	ACNGT	4 cut(s)	38, 448, 1291, 1381
HpyCH4IV	ACGT	8 cut(s)	285, 309, 510, 515, 599, 663, 831, 1213
HpyCH4V	TGCA	8 cut(s)	685, 793, 1054, 1082, 1349, 1414, 1442, 1715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	166, 273, 363, 871, 1244, 1253
HpyF3I	CTNAG	9 cut(s)	12, 459, 861, 947, 1073, 1170, 1284, 1518, 1527
HpySE526I	ACGT	8 cut(s)	285, 309, 510, 515, 599, 663, 831, 1213
Hsp92I	GRCGYC	5 cut(s)	102, 267, 357, 570, 836
Hsp92II	CATG	8 cut(s)	142, 1054, 1094, 1126, 1228, 1316, 1610, 1627
HspAI	GCGC	4 cut(s)	102, 135, 230, 267
KasI	GGCGCC	2 cut(s)	101, 266
Kpn2I	TCCGGA	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	922
KroNI	GCCGGC	1 cut(s)	924
Ksp22I	TGATCA	2 cut(s)	522, 759
KspI	CCGCGG	1 cut(s)	650
Kzo9I	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
LmnI	GCTCC	8 cut(s)	281, 383, 431, 466, 703, 907, 961, 1057
Lsp1109I	GCAGC	6 cut(s)	69, 144, 844, 852, 1204, 1231
LweI	GCATC	4 cut(s)	672, 1091, 1451, 1513
MaeI	CTAG	2 cut(s)	1151, 1487
MaeII	ACGT	8 cut(s)	285, 309, 510, 515, 599, 663, 831, 1213
MaeIII	GTNAC	3 cut(s)	511, 595, 1463
MalI	GATC	8 cut(s)	216, 249, 341, 412, 524, 761, 1359, 1363
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
MboII	GAAGA	6 cut(s)	62, 405, 628, 778, 1240, 1382
MhlI	GDGCHC	5 cut(s)	11, 368, 380, 1062, 1727
MlsI	TGGCCA	1 cut(s)	980
MluCI	AATT	7 cut(s)	124, 481, 563, 1274, 1279, 1400, 1452
MluNI	TGGCCA	1 cut(s)	980
Mly113I	GGCGCC	2 cut(s)	102, 267
MlyI	GAGTC	4 cut(s)	70, 482, 1381, 1471
MmeI	TCCRAC	4 cut(s)	177, 306, 405, 453
Mox20I	TGGCCA	1 cut(s)	980
Mph1103I	ATGCAT	1 cut(s)	1084
MroI	TCCGGA	1 cut(s)	544
MroNI	GCCGGC	1 cut(s)	922
MscI	TGGCCA	1 cut(s)	980
MseI	TTAA	1 cut(s)	1496
MslI	CAYNNNNRTG	1 cut(s)	830
Msp20I	TGGCCA	1 cut(s)	980
MspA1I	CMGCKG	2 cut(s)	82, 649
MspI	CCGG	9 cut(s)	197, 203, 495, 545, 574, 610, 653, 896, 923
MspR9I	CCNGG	6 cut(s)	23, 197, 203, 495, 677, 896
Mva1269I	GAATGC	2 cut(s)	849, 1349
MvaI	CCWGG	2 cut(s)	23, 677
MvnI	CGCG	4 cut(s)	246, 281, 409, 649
MwoI	GCNNNNNNNGC	6 cut(s)	166, 273, 363, 871, 1244, 1253
NaeI	GCCGGC	1 cut(s)	924
NarI	GGCGCC	2 cut(s)	102, 267
NciI	CCSGG	4 cut(s)	197, 203, 495, 896
NdeII	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
NgoMIV	GCCGGC	1 cut(s)	922
NlaIII	CATG	8 cut(s)	142, 1054, 1094, 1126, 1228, 1316, 1610, 1627
NlaIV	GGNNCC	4 cut(s)	103, 201, 268, 903
NmeAIII	GCCGAG	2 cut(s)	1687, 1720
NmuCI	GTSAC	3 cut(s)	511, 595, 1463
NruI	TCGCGA	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	1084
NspI	RCATGY	4 cut(s)	1054, 1094, 1610, 1627
NspV	TTCGAA	4 cut(s)	44, 122, 452, 998
OliI	CACNNNNGTG	1 cut(s)	830
PaeI	GCATGC	2 cut(s)	1094, 1610
PaeR7I	CTCGAG	1 cut(s)	1061
PceI	AGGCCT	1 cut(s)	1190
PciI	ACATGT	1 cut(s)	1623
PcsI	WCGNNNNNNNCGW	4 cut(s)	72, 119, 413, 533
PctI	GAATGC	2 cut(s)	849, 1349
PdiI	GCCGGC	1 cut(s)	924
PfeI	GAWTC	4 cut(s)	209, 454, 1097, 1557
Pfl23II	CGTACG	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	987
PfoI	TCCNGGA	1 cut(s)	493
Ple19I	CGATCG	1 cut(s)	342
PleI	GAGTC	4 cut(s)	69, 481, 1381, 1471
PluTI	GGCGCC	2 cut(s)	105, 270
PpsI	GAGTC	4 cut(s)	69, 481, 1381, 1471
Ppu21I	YACGTR	2 cut(s)	516, 1214
PscI	ACATGT	1 cut(s)	1623
PsiI	TTATAA	1 cut(s)	1160
Psp124BI	GAGCTC	3 cut(s)	380, 1062, 1727
Psp6I	CCWGG	2 cut(s)	21, 675
PspFI	CCCAGC	1 cut(s)	1086
PspGI	CCWGG	2 cut(s)	21, 675
PspLI	CGTACG	1 cut(s)	282
PspN4I	GGNNCC	4 cut(s)	103, 201, 268, 903
PspPI	GGNCC	4 cut(s)	25, 199, 607, 1683
PspXI	VCTCGAGB	1 cut(s)	1061
PvuI	CGATCG	1 cut(s)	342
RruI	TCGCGA	1 cut(s)	409
RsaI	GTAC	3 cut(s)	284, 626, 731
RsaNI	GTAC	3 cut(s)	283, 625, 730
RseI	CAYNNNNRTG	1 cut(s)	830
Rsr2I	CGGWCCG	1 cut(s)	607
RsrII	CGGWCCG	1 cut(s)	607
SacI	GAGCTC	3 cut(s)	380, 1062, 1727
SacII	CCGCGG	1 cut(s)	650
SalI	GTCGAC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	1496
Sau3AI	GATC	8 cut(s)	214, 247, 339, 410, 522, 759, 1357, 1361
Sau96I	GGNCC	4 cut(s)	25, 199, 607, 1683
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	4 cut(s)	70, 482, 1381, 1471
ScrFI	CCNGG	6 cut(s)	23, 197, 203, 495, 677, 896
SduI	GDGCHC	5 cut(s)	11, 368, 380, 1062, 1727
SfaNI	GCATC	4 cut(s)	672, 1091, 1451, 1513
SfoI	GGCGCC	2 cut(s)	103, 268
Sfr274I	CTCGAG	1 cut(s)	1061
Sfr303I	CCGCGG	1 cut(s)	650
SfuI	TTCGAA	4 cut(s)	44, 122, 452, 998
SgrBI	CCGCGG	1 cut(s)	650
SinI	GGWCC	3 cut(s)	25, 607, 1683
SlaI	CTCGAG	1 cut(s)	1061
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	3 cut(s)	733, 1061, 1583
SmoI	CTYRAG	3 cut(s)	733, 1061, 1583
SphI	GCATGC	2 cut(s)	1094, 1610
Sse9I	AATT	7 cut(s)	124, 481, 563, 1274, 1279, 1400, 1452
SseBI	AGGCCT	1 cut(s)	1190
SspDI	GGCGCC	2 cut(s)	101, 266
SspMI	CTAG	2 cut(s)	1151, 1487
SstI	GAGCTC	3 cut(s)	380, 1062, 1727
StuI	AGGCCT	1 cut(s)	1190
StyD4I	CCNGG	6 cut(s)	21, 195, 201, 493, 675, 894
StyI	CCWWGG	1 cut(s)	1686
TaaI	ACNGT	4 cut(s)	38, 448, 1291, 1381
TaiI	ACGT	8 cut(s)	288, 312, 513, 518, 602, 666, 834, 1216
TasI	AATT	7 cut(s)	124, 481, 563, 1274, 1279, 1400, 1452
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	7 cut(s)	102, 558, 580, 649, 652, 749, 1006
TfiI	GAWTC	4 cut(s)	209, 454, 1097, 1557
Tru1I	TTAA	1 cut(s)	1496
Tru9I	TTAA	1 cut(s)	1496
TseFI	GTSAC	3 cut(s)	511, 595, 1463
TseI	GCWGC	6 cut(s)	82, 132, 857, 865, 1217, 1244
Tsp45I	GTSAC	3 cut(s)	511, 595, 1463
TspDTI	ATGAA	4 cut(s)	628, 1241, 1398, 1631
TspGWI	ACGGA	3 cut(s)	312, 801, 1327
Van91I	CCANNNNNTGG	1 cut(s)	987
VpaK11BI	GGWCC	3 cut(s)	25, 607, 1683
XapI	RAATTY	4 cut(s)	481, 563, 1279, 1452
XceI	RCATGY	4 cut(s)	1054, 1094, 1610, 1627
XcmI	CCANNNNNNNNNTGG	2 cut(s)	35, 1319
XhoI	CTCGAG	1 cut(s)	1061
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	2 cut(s)	1151, 1487
ZrmI	AGTACT	1 cut(s)	731
Zsp2I	ATGCAT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.