Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010972

Physical Location & Seq

Genomic Coordinates Forward (+)

78442574 .. 78446993

Gene Structure 4420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG500300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGATGGGCTCTGAGAACCACCAGGACCACCAATACGGTGGTTCGAAAGACGAGATGGAGAGTCTCATCCTCGACGACCCGCCGTTGAACAACGGCGGCGCCAGTAAATCGTCATATTCGAATTACCGCAGCGCCATGTCGACGCTCTCCGACACGCACCACCCGCTCTCGTCTATAATCGTCTCCACGACCCCGGCCCCGGCCGATTCCGATCCGCTTCTGACTGCGCCACCGCCGTTCCGCGATCTCCGAAACCCTAACGGCGCCGATAGCTCCGCGTACGTCGACCCGCCCTCTTACGGCGACGTGGTTTTCAGTCCGTTGGATGGCGAGACGATCGGCGAAATCAACGGCGTCGAGAGTCCGAGCAAGAGCTCCGACCATTCCAGCTCTTATTCGCTTTCGCGATCTTCGTCTTCCAGCTCCGACTATATCAAAATCACGGTTTCGAATCCTCAGAAGGAGCAGGAGTCCACGAATTCGGTTATTCCCGGAGGGAATACTTACGTCACGTATCTGATCACGACGAGGACGAACATTCCGGAGTTCGGCGGATCGGAATTCGGAGTCCGGCGGCGGTTTCGGGACATTGTGACGTTATCGGACCGGCTGGCGGAGGCCTACAGAGGGTTCTTCATTCCGCCGCGGCCAGATAAGAACGTGGTGGAGAGCCAAGTGATGCAGAAACAAGAGTTTGTGGAGCAGAGAAGAGTGGCATTGGAGAAGTACTTGAGGCGGTTAGCGGCTCACCCTGTGATCAAGAAGAGTGATGAGTTGAAGGTGTTTCTGCAAGTTCAGGGGAGGTTTCCGTTGCCGATGACCACCGACGTGGCGTCGAGAATGCTGGATGGGGCTGCTAAGCTGCCGAAACAGTTGTTCGGCGAGAGTTCCCCGGTGGCTCCACACGAGGTGGTTCAGCCAGCGAAAGGCGGGAGGGACTTGCTGAGGTTGTTCAAGGAGCTGAAGCAGTCTGTGGCCAATGACTGGGGAGGTTCGAAGCCGCTTGTGGGAGAGGAGGATAAGGAGTTTATGGAAAAGAAGGACCACATGCAGGAGCTCGAGCAACAACTCAGCAATGCATCTCAGCATGCTGAATCACTTGTAAAAGCTCAACAAGACATGGGAGAGACTATGGGAGAGTTAGGACTAGCATTTATAAAACTGACAAAGTTTGAAAATGAGGAGGCCTTGTTCAACTCTCAAAGAATACGTGCTGCTGACATGAAGAATGTGGCGACTGCTGCTGTAAAAGCCAGCAGATACTATCGAGAATTGAATTCTCAGACTGTCAAACATTTGGACACATTCCATGAGTATCTTGGGCTAATGTTATCCGTCAAAGGTGCATTCTCGGATCGATCAAGTGCTTTATTGACTGTTCAGACTCTTCTATCAGAATTGGGTTCATTGCAGTCGAGGGCTGAAAAACTTGAAGTTGCATCAAACAAAATTTTTGGTGGTGACAAATCAAGGACTCGCAAACTAGAGGAGTTAAATGAAACCATAAGAGCTACTGAGGATGCTAAGAATATAGCAATCAGAGAATATGAGAGAATCAAGGAAAACAACAGAAGTGAACTTGAGAGGCTTGACAGCGAGAGGCATGCTGACTTCTTGAACATGTTGAAGGGGTTTGTTCATAATCAGGTGGGATATGCCGAGAAAATAGCAAATGTGTGGTCCAAGGTTGCCGAGGAGACCAGTTCGCATGCACGAGAGAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007034 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009791 GO:0009987 GO:0010008 GO:0010467 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019538 GO:0019898 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032585 GO:0032588 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045324 GO:0046907 GO:0046982 GO:0046983 GO:0048856 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0071704 GO:0071840 GO:0090351 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

575

Amino Acids

63.98

Weight (kDa)

5.81

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	182 - 265	3.9e-18	PX domain
Vps5	PF09325	333 - 565	2.5e-21	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07120 AT5G07120 AT5G07120 AT5G58440
fragaria_vesca	FvH4_3g39770
malus_domestica	MD03G1056600.v1.1 MD11G1058400.v1.1
prunus_persica	Prupe.6G048200_v2.0.a1
pyrus_communis	pycom11g04840
rosa_chinensis	RchiOBHm_Chr5g0071651
rosa_laevigata	RLG00000036238
rosa_multiflora	Rmu_sc0002060.1_g000020 Rmu_sc0005745.1_g000035 Rmu_sc0006567.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009520
rosa_rugosa	Rorug05G0414000
rosa_samantha	Rh5BG489500 Rh5CG513300 Rh5DG500300
rosa_wichuraiana	Rw5G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1157
AccB1I	GGYRCC	2 cut(s)	98, 263
AccB7I	CCANNNNNTGG	1 cut(s)	984
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	2 cut(s)	140, 285
AccII	CGCG	4 cut(s)	243, 278, 406, 646
AccIII	TCCGGA	1 cut(s)	541
AclWI	GGATC	3 cut(s)	206, 562, 1362
AcoI	YGGCCR	3 cut(s)	201, 647, 975
AcsI	RAATTY	4 cut(s)	478, 560, 1276, 1449
AcuI	CTGAAG	1 cut(s)	983
AcyI	GRCGYC	4 cut(s)	99, 264, 354, 833
AdeI	CACNNNGTG	2 cut(s)	754, 910
AfaI	GTAC	2 cut(s)	281, 728
AflIII	ACRYGT	1 cut(s)	1620
AgsI	TTSAA	9 cut(s)	88, 778, 955, 1175, 1195, 1276, 1433, 1618, 1627
AhdI	GACNNNNNGTC	1 cut(s)	832
AjiI	CACGTC	2 cut(s)	307, 829
AjnI	CCWGG	1 cut(s)	21
AleI	CACNNNNGTG	1 cut(s)	827
AloI	GAACNNNNNNTCC	2 cut(s)	1175, 1207
Alw21I	GWGCWC	3 cut(s)	377, 1059, 1724
Alw26I	GTCTC	5 cut(s)	68, 187, 326, 1121, 1691
AlwI	GGATC	3 cut(s)	206, 562, 1362
Ama87I	CYCGRG	1 cut(s)	1058
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	6 cut(s)	195, 201, 618, 647, 975, 1185
ApeKI	GCWGC	5 cut(s)	129, 854, 862, 1214, 1241
ApoI	RAATTY	4 cut(s)	478, 560, 1276, 1449
ArsI	GACNNNNNNTTYG	2 cut(s)	1664, 1696
AspLEI	GCGC	4 cut(s)	101, 134, 229, 266
AspS9I	GGNCC	5 cut(s)	25, 196, 604, 1042, 1680
AsuC2I	CCSGG	4 cut(s)	194, 200, 492, 893
AsuHPI	GGTGA	2 cut(s)	740, 1472
AsuII	TTCGAA	4 cut(s)	44, 119, 449, 995
AvaI	CYCGRG	1 cut(s)	1058
AvaII	GGWCC	4 cut(s)	25, 604, 1042, 1680
BalI	TGGCCA	1 cut(s)	977
BanI	GGYRCC	2 cut(s)	98, 263
BanII	GRGCYC	4 cut(s)	11, 377, 1059, 1724
BauI	CACGAG	2 cut(s)	905, 1713
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	3 cut(s)	377, 1059, 1724
BbvCI	CCTCAGC	1 cut(s)	944
BbvI	GCAGC	5 cut(s)	141, 841, 849, 1201, 1228
BccI	CCATC	3 cut(s)	49, 320, 842
BceAI	ACGGC	6 cut(s)	67, 109, 220, 277, 316, 367
BcgI	CGANNNNNNTGC	2 cut(s)	1586, 1620
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	2 cut(s)	519, 756
BcnI	CCSGG	4 cut(s)	194, 200, 492, 893
BcoDI	GTCTC	5 cut(s)	68, 187, 326, 1121, 1691
BfaI	CTAG	2 cut(s)	1148, 1484
BfmI	CTRYAG	1 cut(s)	622
BfoI	RGCGCY	3 cut(s)	102, 135, 267
BlpI	GCTNAGC	1 cut(s)	858
BmcAI	AGTACT	1 cut(s)	728
Bme1390I	CCNGG	5 cut(s)	23, 194, 200, 492, 893
Bme18I	GGWCC	4 cut(s)	25, 604, 1042, 1680
BmeRI	GACNNNNNGTC	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	1058
BmgBI	CACGTC	2 cut(s)	307, 829
BmgT120I	GGNCC	5 cut(s)	25, 196, 604, 1042, 1680
BmiI	GGNNCC	4 cut(s)	100, 198, 265, 900
BmrFI	CCNGG	5 cut(s)	23, 194, 200, 492, 893
BmrI	ACTGGG	1 cut(s)	994
BmsI	GCATC	4 cut(s)	669, 1088, 1448, 1510
BmuI	ACTGGG	1 cut(s)	994
BpiI	GAAGAC	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	944
Bpu1102I	GCTNAGC	1 cut(s)	858
Bpu14I	TTCGAA	4 cut(s)	44, 119, 449, 995
BpuEI	CTTGAG	2 cut(s)	751, 1601
BpuMI	CCSGG	4 cut(s)	194, 200, 492, 893
Bsa29I	ATCGAT	1 cut(s)	1357
BsaAI	YACGTR	2 cut(s)	513, 1211
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	4 cut(s)	99, 264, 354, 833
BsaI	GGTCTC	1 cut(s)	1691
BsaJI	CCNNGG	6 cut(s)	192, 198, 644, 891, 1683, 1692
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	4 cut(s)	455, 485, 1175, 1205
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	3 cut(s)	102, 989, 1701
Bse3DI	GCAATG	2 cut(s)	1081, 1406
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	1357
BseDI	CCNNGG	6 cut(s)	192, 198, 644, 891, 1683, 1692
BseGI	GGATG	4 cut(s)	66, 331, 853, 1525
BseJI	GATNNNNATC	1 cut(s)	210
BseMI	GCAATG	2 cut(s)	1081, 1406
BseMII	CTCAG	6 cut(s)	470, 935, 1084, 1097, 1295, 1506
BseNI	ACTGG	3 cut(s)	102, 989, 1701
BseRI	GAGGAG	4 cut(s)	1028, 1196, 1502, 1709
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	5 cut(s)	141, 841, 849, 1201, 1228
Bsh1236I	CGCG	4 cut(s)	243, 278, 406, 646
Bsh1285I	CGRYCG	2 cut(s)	204, 339
BshFI	GGCC	6 cut(s)	197, 203, 620, 649, 977, 1187
BshNI	GGYRCC	2 cut(s)	98, 263
BshVI	ATCGAT	1 cut(s)	1357
BsiEI	CGRYCG	2 cut(s)	204, 339
BsiHKAI	GWGCWC	3 cut(s)	377, 1059, 1724
BsiHKCI	CYCGRG	1 cut(s)	1058
BsiSI	CCGG	7 cut(s)	194, 200, 492, 542, 571, 607, 893
BsiWI	CGTACG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	599, 950
BsmAI	GTCTC	5 cut(s)	68, 187, 326, 1121, 1691
BsmBI	CGTCTC	2 cut(s)	187, 326
BsmFI	GGGAC	2 cut(s)	599, 950
BsmI	GAATGC	2 cut(s)	846, 1346
BsnI	GGCC	6 cut(s)	197, 203, 620, 649, 977, 1187
Bso31I	GGTCTC	1 cut(s)	1691
BsoBI	CYCGRG	1 cut(s)	1058
Bsp119I	TTCGAA	4 cut(s)	44, 119, 449, 995
Bsp1286I	GDGCHC	4 cut(s)	11, 377, 1059, 1724
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
Bsp1720I	GCTNAGC	1 cut(s)	858
Bsp68I	TCGCGA	1 cut(s)	406
BspANI	GGCC	6 cut(s)	197, 203, 620, 649, 977, 1187
BspCNI	CTCAG	7 cut(s)	4, 469, 936, 1083, 1096, 1294, 1507
BspDI	ATCGAT	1 cut(s)	1357
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	4 cut(s)	243, 278, 406, 646
BspLI	GGNNCC	4 cut(s)	100, 198, 265, 900
BspPI	GGATC	3 cut(s)	206, 562, 1362
BspT104I	TTCGAA	4 cut(s)	44, 119, 449, 995
BspT107I	GGYRCC	2 cut(s)	98, 263
BspTNI	GGTCTC	1 cut(s)	1691
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	1081, 1406
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	3 cut(s)	102, 989, 1701
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	6 cut(s)	192, 198, 644, 891, 1683, 1692
BssMI	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
BssNI	GRCGYC	4 cut(s)	99, 264, 354, 833
BssSI	CACGAG	2 cut(s)	905, 1713
BssT1I	CCWWGG	1 cut(s)	1683
Bst2BI	CACGAG	2 cut(s)	905, 1713
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	5 cut(s)	38, 445, 873, 1288, 1378
Bst6I	CTCTTC	3 cut(s)	703, 758, 1392
BstACI	GRCGYC	4 cut(s)	99, 264, 354, 833
BstBAI	YACGTR	2 cut(s)	513, 1211
BstBI	TTCGAA	4 cut(s)	44, 119, 449, 995
BstC8I	GCNNGC	6 cut(s)	612, 921, 1089, 1255, 1605, 1710
BstDEI	CTNAG	9 cut(s)	12, 456, 858, 944, 1070, 1083, 1281, 1515, 1524
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	4 cut(s)	66, 331, 853, 1525
BstFNI	CGCG	4 cut(s)	243, 278, 406, 646
BstH2I	RGCGCY	3 cut(s)	102, 135, 267
BstHHI	GCGC	4 cut(s)	101, 134, 229, 266
BstKTI	GATC	9 cut(s)	214, 247, 339, 410, 522, 557, 759, 1357, 1361
BstMAI	GTCTC	5 cut(s)	68, 187, 326, 1121, 1691
BstMBI	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
BstMCI	CGRYCG	2 cut(s)	204, 339
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 270, 1241, 1250
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	5 cut(s)	1051, 1091, 1607, 1624, 1712
BstSCI	CCNGG	5 cut(s)	21, 192, 198, 490, 891
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	4 cut(s)	243, 278, 406, 646
BstV1I	GCAGC	5 cut(s)	141, 841, 849, 1201, 1228
BstV2I	GAAGAC	1 cut(s)	408
BstXI	CCANNNNNNTGG	2 cut(s)	38, 829
BstZI	CGGCCG	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	1357
BsuRI	GGCC	6 cut(s)	197, 203, 620, 649, 977, 1187
BsuTUI	ATCGAT	1 cut(s)	1357
BtgI	CCRYGG	1 cut(s)	644
BtrI	CACGTC	2 cut(s)	307, 829
BtsCI	GGATG	4 cut(s)	66, 331, 853, 1525
BtuMI	TCGCGA	1 cut(s)	406
Cac8I	GCNNGC	6 cut(s)	612, 921, 1089, 1255, 1605, 1710
CfoI	GCGC	4 cut(s)	101, 134, 229, 266
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	5 cut(s)	25, 196, 604, 1042, 1680
Cfr42I	CCGCGG	1 cut(s)	647
ClaI	ATCGAT	1 cut(s)	1357
CpoI	CGGWCCG	1 cut(s)	604
CseI	GACGC	3 cut(s)	151, 343, 822
Csp6I	GTAC	2 cut(s)	280, 727
CspI	CGGWCCG	1 cut(s)	604
CviAII	CATG	9 cut(s)	136, 1048, 1088, 1120, 1222, 1310, 1604, 1621, 1709
CviQI	GTAC	2 cut(s)	280, 727
DdeI	CTNAG	9 cut(s)	12, 456, 858, 944, 1070, 1083, 1281, 1515, 1524
DinI	GGCGCC	2 cut(s)	100, 265
DpnI	GATC	9 cut(s)	213, 246, 338, 409, 521, 556, 758, 1356, 1360
DpnII	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
DraIII	CACNNNGTG	2 cut(s)	754, 910
DriI	GACNNNNNGTC	1 cut(s)	832
EaeI	YGGCCR	3 cut(s)	201, 647, 975
EagI	CGGCCG	1 cut(s)	201
Eam1104I	CTCTTC	3 cut(s)	703, 758, 1392
Eam1105I	GACNNNNNGTC	1 cut(s)	832
EarI	CTCTTC	3 cut(s)	703, 758, 1392
EciI	GGCGGA	3 cut(s)	567, 629, 630
Ecl136II	GAGCTC	3 cut(s)	375, 1057, 1722
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	1683
Eco147I	AGGCCT	2 cut(s)	620, 1187
Eco24I	GRGCYC	4 cut(s)	11, 377, 1059, 1724
Eco31I	GGTCTC	1 cut(s)	1691
Eco47I	GGWCC	4 cut(s)	25, 604, 1042, 1680
Eco52I	CGGCCG	1 cut(s)	201
Eco53kI	GAGCTC	3 cut(s)	375, 1057, 1722
Eco57I	CTGAAG	1 cut(s)	983
Eco88I	CYCGRG	1 cut(s)	1058
EcoICRI	GAGCTC	3 cut(s)	375, 1057, 1722
EcoRI	GAATTC	3 cut(s)	478, 560, 1276
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	1683
EcoT22I	ATGCAT	1 cut(s)	1081
EcoT38I	GRGCYC	4 cut(s)	11, 377, 1059, 1724
EgeI	GGCGCC	2 cut(s)	100, 265
EheI	GGCGCC	2 cut(s)	100, 265
ErhI	CCWWGG	1 cut(s)	1683
Esp3I	CGTCTC	2 cut(s)	187, 326
FaeI	CATG	9 cut(s)	139, 1051, 1091, 1123, 1225, 1313, 1607, 1624, 1712
FaqI	GGGAC	2 cut(s)	599, 950
FatI	CATG	9 cut(s)	135, 1047, 1087, 1119, 1221, 1309, 1603, 1620, 1708
FauI	CCCGC	4 cut(s)	87, 171, 297, 923
FbaI	TGATCA	2 cut(s)	519, 756
FblI	GTMKAC	2 cut(s)	140, 285
FokI	GGATG	4 cut(s)	53, 338, 860, 1532
FriOI	GRGCYC	4 cut(s)	11, 377, 1059, 1724
FspBI	CTAG	2 cut(s)	1148, 1484
GlaI	GCGC	4 cut(s)	100, 133, 228, 265
HaeII	RGCGCY	3 cut(s)	102, 135, 267
HaeIII	GGCC	6 cut(s)	197, 203, 620, 649, 977, 1187
HapII	CCGG	7 cut(s)	194, 200, 492, 542, 571, 607, 893
HgaI	GACGC	3 cut(s)	151, 343, 822
HhaI	GCGC	4 cut(s)	101, 134, 229, 266
Hin1I	GRCGYC	4 cut(s)	99, 264, 354, 833
Hin1II	CATG	9 cut(s)	139, 1051, 1091, 1123, 1225, 1313, 1607, 1624, 1712
Hin6I	GCGC	4 cut(s)	99, 132, 227, 264
HinP1I	GCGC	4 cut(s)	99, 132, 227, 264
HincII	GTYRAC	2 cut(s)	141, 286
HindII	GTYRAC	2 cut(s)	141, 286
HpaII	CCGG	7 cut(s)	194, 200, 492, 542, 571, 607, 893
HphI	GGTGA	2 cut(s)	740, 1472
Hpy166II	GTNNAC	4 cut(s)	141, 286, 474, 1577
Hpy8I	GTNNAC	4 cut(s)	141, 286, 474, 1577
Hpy99I	CGWCG	8 cut(s)	77, 145, 287, 308, 359, 529, 830, 838
HpyAV	CCTTC	4 cut(s)	454, 772, 1033, 1621
HpyCH4III	ACNGT	5 cut(s)	38, 445, 873, 1288, 1378
HpyCH4IV	ACGT	8 cut(s)	282, 306, 507, 512, 596, 660, 828, 1210
HpyCH4V	TGCA	8 cut(s)	682, 790, 1051, 1079, 1346, 1411, 1439, 1712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 270, 1241, 1250
HpyF3I	CTNAG	9 cut(s)	12, 456, 858, 944, 1070, 1083, 1281, 1515, 1524
HpySE526I	ACGT	8 cut(s)	282, 306, 507, 512, 596, 660, 828, 1210
Hsp92I	GRCGYC	4 cut(s)	99, 264, 354, 833
Hsp92II	CATG	9 cut(s)	139, 1051, 1091, 1123, 1225, 1313, 1607, 1624, 1712
HspAI	GCGC	4 cut(s)	99, 132, 227, 264
KasI	GGCGCC	2 cut(s)	98, 263
Kpn2I	TCCGGA	1 cut(s)	541
Ksp22I	TGATCA	2 cut(s)	519, 756
KspI	CCGCGG	1 cut(s)	647
Kzo9I	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
LmnI	GCTCC	8 cut(s)	278, 380, 428, 463, 700, 904, 958, 1054
Lsp1109I	GCAGC	5 cut(s)	141, 841, 849, 1201, 1228
LweI	GCATC	4 cut(s)	669, 1088, 1448, 1510
MaeI	CTAG	2 cut(s)	1148, 1484
MaeII	ACGT	8 cut(s)	282, 306, 507, 512, 596, 660, 828, 1210
MaeIII	GTNAC	3 cut(s)	508, 592, 1460
MalI	GATC	9 cut(s)	213, 246, 338, 409, 521, 556, 758, 1356, 1360
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
MboII	GAAGA	7 cut(s)	402, 408, 625, 720, 775, 1237, 1379
MhlI	GDGCHC	4 cut(s)	11, 377, 1059, 1724
MlsI	TGGCCA	1 cut(s)	977
MluCI	AATT	7 cut(s)	121, 478, 560, 1271, 1276, 1397, 1449
MluNI	TGGCCA	1 cut(s)	977
Mly113I	GGCGCC	2 cut(s)	99, 264
MlyI	GAGTC	6 cut(s)	70, 370, 479, 576, 1378, 1468
MmeI	TCCRAC	4 cut(s)	174, 303, 402, 450
Mox20I	TGGCCA	1 cut(s)	977
Mph1103I	ATGCAT	1 cut(s)	1081
MroI	TCCGGA	1 cut(s)	541
MscI	TGGCCA	1 cut(s)	977
MseI	TTAA	1 cut(s)	1493
MslI	CAYNNNNRTG	1 cut(s)	827
Msp20I	TGGCCA	1 cut(s)	977
MspA1I	CMGCKG	1 cut(s)	646
MspI	CCGG	7 cut(s)	194, 200, 492, 542, 571, 607, 893
MspR9I	CCNGG	5 cut(s)	23, 194, 200, 492, 893
Mva1269I	GAATGC	2 cut(s)	846, 1346
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	4 cut(s)	243, 278, 406, 646
MwoI	GCNNNNNNNGC	4 cut(s)	163, 270, 1241, 1250
NarI	GGCGCC	2 cut(s)	99, 264
NciI	CCSGG	4 cut(s)	194, 200, 492, 893
NdeII	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
NlaIII	CATG	9 cut(s)	139, 1051, 1091, 1123, 1225, 1313, 1607, 1624, 1712
NlaIV	GGNNCC	4 cut(s)	100, 198, 265, 900
NmeAIII	GCCGAG	2 cut(s)	1684, 1717
NmuCI	GTSAC	3 cut(s)	508, 592, 1460
NruI	TCGCGA	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	1081
NspI	RCATGY	5 cut(s)	1051, 1091, 1607, 1624, 1712
NspV	TTCGAA	4 cut(s)	44, 119, 449, 995
OliI	CACNNNNGTG	1 cut(s)	827
PaeI	GCATGC	3 cut(s)	1091, 1607, 1712
PaeR7I	CTCGAG	1 cut(s)	1058
PceI	AGGCCT	2 cut(s)	620, 1187
PciI	ACATGT	1 cut(s)	1620
PcsI	WCGNNNNNNNCGW	3 cut(s)	116, 410, 530
PctI	GAATGC	2 cut(s)	846, 1346
PfeI	GAWTC	4 cut(s)	206, 451, 1094, 1554
Pfl23II	CGTACG	1 cut(s)	279
PflMI	CCANNNNNTGG	1 cut(s)	984
PfoI	TCCNGGA	1 cut(s)	490
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	6 cut(s)	69, 369, 478, 575, 1378, 1468
PluTI	GGCGCC	2 cut(s)	102, 267
PpsI	GAGTC	6 cut(s)	69, 369, 478, 575, 1378, 1468
Ppu21I	YACGTR	2 cut(s)	513, 1211
PscI	ACATGT	1 cut(s)	1620
PsiI	TTATAA	1 cut(s)	1157
Psp124BI	GAGCTC	3 cut(s)	377, 1059, 1724
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspLI	CGTACG	1 cut(s)	279
PspN4I	GGNNCC	4 cut(s)	100, 198, 265, 900
PspPI	GGNCC	5 cut(s)	25, 196, 604, 1042, 1680
PspXI	VCTCGAGB	1 cut(s)	1058
PvuI	CGATCG	1 cut(s)	339
RruI	TCGCGA	1 cut(s)	406
RsaI	GTAC	2 cut(s)	281, 728
RsaNI	GTAC	2 cut(s)	280, 727
RseI	CAYNNNNRTG	1 cut(s)	827
Rsr2I	CGGWCCG	1 cut(s)	604
RsrII	CGGWCCG	1 cut(s)	604
SacI	GAGCTC	3 cut(s)	377, 1059, 1724
SacII	CCGCGG	1 cut(s)	647
SalI	GTCGAC	2 cut(s)	139, 284
SaqAI	TTAA	1 cut(s)	1493
Sau3AI	GATC	9 cut(s)	211, 244, 336, 407, 519, 554, 756, 1354, 1358
Sau96I	GGNCC	5 cut(s)	25, 196, 604, 1042, 1680
ScaI	AGTACT	1 cut(s)	728
SchI	GAGTC	6 cut(s)	70, 370, 479, 576, 1378, 1468
ScrFI	CCNGG	5 cut(s)	23, 194, 200, 492, 893
SduI	GDGCHC	4 cut(s)	11, 377, 1059, 1724
SfaNI	GCATC	4 cut(s)	669, 1088, 1448, 1510
SfcI	CTRYAG	1 cut(s)	622
SfoI	GGCGCC	2 cut(s)	100, 265
Sfr274I	CTCGAG	1 cut(s)	1058
Sfr303I	CCGCGG	1 cut(s)	647
SfuI	TTCGAA	4 cut(s)	44, 119, 449, 995
SgrBI	CCGCGG	1 cut(s)	647
SinI	GGWCC	4 cut(s)	25, 604, 1042, 1680
SlaI	CTCGAG	1 cut(s)	1058
SmiMI	CAYNNNNRTG	1 cut(s)	827
SmlI	CTYRAG	3 cut(s)	730, 1058, 1580
SmoI	CTYRAG	3 cut(s)	730, 1058, 1580
SphI	GCATGC	3 cut(s)	1091, 1607, 1712
Sse9I	AATT	7 cut(s)	121, 478, 560, 1271, 1276, 1397, 1449
SseBI	AGGCCT	2 cut(s)	620, 1187
SspDI	GGCGCC	2 cut(s)	98, 263
SspMI	CTAG	2 cut(s)	1148, 1484
SstI	GAGCTC	3 cut(s)	377, 1059, 1724
StuI	AGGCCT	2 cut(s)	620, 1187
StyD4I	CCNGG	5 cut(s)	21, 192, 198, 490, 891
StyI	CCWWGG	1 cut(s)	1683
TaaI	ACNGT	5 cut(s)	38, 445, 873, 1288, 1378
TaiI	ACGT	8 cut(s)	285, 309, 510, 515, 599, 663, 831, 1213
TasI	AATT	7 cut(s)	121, 478, 560, 1271, 1276, 1397, 1449
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	6 cut(s)	99, 577, 646, 649, 746, 1003
TfiI	GAWTC	4 cut(s)	206, 451, 1094, 1554
Tru1I	TTAA	1 cut(s)	1493
Tru9I	TTAA	1 cut(s)	1493
TseFI	GTSAC	3 cut(s)	508, 592, 1460
TseI	GCWGC	5 cut(s)	129, 854, 862, 1214, 1241
Tsp45I	GTSAC	3 cut(s)	508, 592, 1460
TspDTI	ATGAA	5 cut(s)	625, 1238, 1395, 1512, 1628
TspGWI	ACGGA	3 cut(s)	309, 798, 1324
Van91I	CCANNNNNTGG	1 cut(s)	984
VpaK11BI	GGWCC	4 cut(s)	25, 604, 1042, 1680
XapI	RAATTY	4 cut(s)	478, 560, 1276, 1449
XceI	RCATGY	5 cut(s)	1051, 1091, 1607, 1624, 1712
XcmI	CCANNNNNNNNNTGG	2 cut(s)	35, 1316
XhoI	CTCGAG	1 cut(s)	1058
XmiI	GTMKAC	2 cut(s)	140, 285
XspI	CTAG	2 cut(s)	1148, 1484
ZrmI	AGTACT	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	1081

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.