FvH4_3g40470
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013648
Physical Location & Seq
Reverse (-)
34157212 .. 34159949
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40470.t1

Sequence Viewer

Length: 1305 bp
ATGGGGGGAAGAGAAACCACAACAATGTCCTCCACAACTCCTCCACCTCCACAACCAGAGCCACCAAAGCCAATGCACCACCACTCCAATCCCAATCCCATTCCCATTCCCAACCCTAACCCTACTTTCCTCCCCAATCCCAAAGACCCTCTCTTTCTTCCTTCTCCTGCTGCCAATGTGAAACCCACCGTGATCTCCTCCGAGAATCGCGCGGCGCCATTCACCACCAGCGCTGCCACGTCATCCTCCTCCACCTCCTCCTCCTCTTCCTCCTCCACCTCTACAATGCTGGGCTCTCTCCCCAACACCAACCCTTTCATCAGATCATCAACCTCCGCCCACCACCACTTTCCCGCCACAACTCACCGGAGGGCCCACTCCGAGGTCAGCTTCCGGCTGCCGGAGGATCTCATGGATCTTTCCGGCCCCGATCCCTTCACCTCCTCCGCCGCCGCCGCCGCCGACGACGAGGAGGATCTCTTCTCCACCTACATCGACCTCGACAAGCTCCAGGCCGGCGCCTCCGCCGCCACCGACGACGACAGCGGCGGCGGCGGAGAGAAGAGGGCGGCGTCGCGGCACAGGCATAGTAGCTCCGTGGACACGTCGTCGACGTCGACGGGCGTGTTCGGTGAGGTTATGGAGGCCAAGAAGGCAATGCCGCCGGATAAGCTCGCCGAGCTTTGGACTCTTGATCCAAAGCGCGCCAAAAGGATATTAGCAAATCGGCAGTCTGCTGCTCGCTCAAAGGAGAGGAAGGCCCGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAGACAGAAGCAACCACTCTTTCTGCCCAACTCACATTATTCCAGAGGGACACAACAGGTCTGAATACTGAAAACACAGAGCTTAAGCTTCGACTACAAGCTATGGAGCAACAAGCTCAGTTGCGAGATGCTCTAAATGAAGCACTGAAGAAGGAGGTTGAGAGGCTCAAGTTTGCCACAGGGGAGATGATGAACCATTCAGAATCATTCAACTTGGGAATGCAGCAGATGCCATATAACAACAACCAGTCGGCTTATTTTCCAATTACACAACAGCAACCAGGACCTGCTGGTCACCAGAACATGCAGATGCCACCATTTAATCATTCCCAGTCTAGTATGCCAAGTAACCTTCATCAGCCAAACTCTCATACTCTTTCAGATATTATGCAGAACGGCCCTGTTGGTCAGTTACAGGGGCTTGACATCAGTAATAAAATGCCACATCTCGTGAAGTCTGAAGGCCCCTCACTTTCTGCAAGTGAGAGTAGTACCACTTTTTAA

Protein Analysis

435

Amino Acids

47.12

Weight (kDa)

6.35

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 231 - 281 8.9e-07 Basic region leucine zipper
bZIP_1 PF00170 234 - 285 2.2e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica Prupe.6G041400_v2.0.a1
pyrus_communis pycom03g04130 pycom11g04360
rosa_chinensis RchiOBHm_Chr5g0073151
rosa_laevigata RLG00000036369
rosa_multiflora Rmu_sc0021999.1_g000001
rosa_roxburghii Rroxscaffold_1G00008030
rosa_rugosa Rorug05G0421500
rosa_samantha Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana Rw5G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1092
AatII GACGTC 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 1096
AccB1I GGYRCC 2 cut(s) 214, 518
AccI GTMKAC 2 cut(s) 611, 617
AccII CGCG 4 cut(s) 210, 212, 577, 705
AclWI GGATC 5 cut(s) 414, 423, 425, 483, 689
AcuI CTGAAG 3 cut(s) 785, 968, 1281
AcyI GRCGYC 4 cut(s) 215, 519, 572, 614
AfaI GTAC 1 cut(s) 1294
AfeI AGCGCT 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 382, 400, 684
AflII CTTAAG 1 cut(s) 884
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 1 cut(s) 1012
AhdI GACNNNNNGTC 1 cut(s) 607
AjiI CACGTC 2 cut(s) 240, 606
AjnI CCWGG 2 cut(s) 510, 1081
AluBI AGCT 9 cut(s) 390, 508, 594, 673, 682, 883, 889, 902, 917
AluI AGCT 9 cut(s) 390, 508, 594, 673, 682, 883, 889, 902, 917
AlwI GGATC 5 cut(s) 414, 423, 425, 483, 689
AlwNI CAGNNNCTG 1 cut(s) 1088
Aor51HI AGCGCT 1 cut(s) 232
AoxI GGCC 7 cut(s) 372, 424, 513, 645, 759, 1198, 1264
ApaI GGGCCC 1 cut(s) 376
ApeKI GCWGC 5 cut(s) 170, 233, 397, 737, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspLEI GCGC 7 cut(s) 212, 217, 233, 521, 705, 707, 786
AspS9I GGNCC 7 cut(s) 372, 373, 425, 760, 1085, 1199, 1265
AsuHPI GGTGA 5 cut(s) 214, 356, 430, 644, 1088
AvaII GGWCC 1 cut(s) 1085
BaeGI GKGCMC 1 cut(s) 376
BanI GGYRCC 2 cut(s) 214, 518
BanII GRGCYC 2 cut(s) 296, 376
BauI CACGAG 1 cut(s) 1250
BbvI GCAGC 5 cut(s) 157, 220, 384, 724, 1036
BceAI ACGGC 1 cut(s) 1213
BciT130I CCWGG 2 cut(s) 512, 1083
BfaI CTAG 1 cut(s) 1137
BfoI RGCGCY 3 cut(s) 218, 234, 522
BfrI CTTAAG 1 cut(s) 884
BfuAI ACCTGC 1 cut(s) 1096
BglI GCCNNNNNGGC 1 cut(s) 653
Bme1390I CCNGG 2 cut(s) 512, 1083
Bme18I GGWCC 1 cut(s) 1085
BmeRI GACNNNNNGTC 1 cut(s) 607
BmgBI CACGTC 2 cut(s) 240, 606
BmgT120I GGNCC 7 cut(s) 372, 373, 425, 760, 1085, 1199, 1265
BmiI GGNNCC 5 cut(s) 216, 374, 427, 520, 1267
BmrFI CCNGG 2 cut(s) 512, 1083
BmrI ACTGGG 1 cut(s) 1126
BmsI GCATC 3 cut(s) 919, 1020, 1101
BmuI ACTGGG 1 cut(s) 1126
BpmI CTGGAG 1 cut(s) 494
BpuEI CTTGAG 2 cut(s) 800, 953
BsaHI GRCGYC 4 cut(s) 215, 519, 572, 614
BsaJI CCNNGG 2 cut(s) 381, 597
BsaWI WCCGGW 1 cut(s) 366
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 68, 98
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 400, 684
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 2 cut(s) 1048, 1132
Bse3DI GCAATG 1 cut(s) 663
BseBI CCWGG 2 cut(s) 512, 1083
BseDI CCNNGG 2 cut(s) 381, 597
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 3 cut(s) 382, 400, 684
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 932
BseNI ACTGG 2 cut(s) 1048, 1132
BsePI GCGCGC 1 cut(s) 703
BseRI GAGGAG 9 cut(s) 30, 187, 238, 247, 250, 253, 262, 433, 485
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 5 cut(s) 157, 220, 384, 724, 1036
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 4 cut(s) 210, 212, 577, 705
BshFI GGCC 7 cut(s) 374, 426, 515, 647, 761, 1200, 1266
BshNI GGYRCC 2 cut(s) 214, 518
BsiSI CCGG 6 cut(s) 367, 394, 401, 423, 516, 665
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 3 cut(s) 382, 400, 684
BsmFI GGGAC 1 cut(s) 863
BsmI GAATGC 1 cut(s) 1026
BsnI GGCC 7 cut(s) 374, 426, 515, 647, 761, 1200, 1266
Bsp120I GGGCCC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 296, 376
Bsp143I GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
BspANI GGCC 7 cut(s) 374, 426, 515, 647, 761, 1200, 1266
BspCNI CTCAG 1 cut(s) 931
BspFNI CGCG 4 cut(s) 210, 212, 577, 705
BspLI GGNNCC 5 cut(s) 216, 374, 427, 520, 1267
BspMI ACCTGC 1 cut(s) 1096
BspPI GGATC 5 cut(s) 414, 423, 425, 483, 689
BspT107I GGYRCC 2 cut(s) 214, 518
BspTI CTTAAG 1 cut(s) 884
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 2 cut(s) 1048, 1132
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 2 cut(s) 381, 597
BssHII GCGCGC 1 cut(s) 703
BssMI GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
BssNI GRCGYC 4 cut(s) 215, 519, 572, 614
BssSI CACGAG 1 cut(s) 1250
Bst2BI CACGAG 1 cut(s) 1250
Bst2UI CCWGG 2 cut(s) 512, 1083
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 4 cut(s) 4, 271, 485, 557
BstACI GRCGYC 4 cut(s) 215, 519, 572, 614
BstAFI CTTAAG 1 cut(s) 884
BstAPI GCANNNNNTGC 1 cut(s) 1030
BstC8I GCNNGC 5 cut(s) 517, 675, 705, 742, 763
BstDEI CTNAG 1 cut(s) 918
BstDSI CCRYGG 1 cut(s) 597
BstEII GGTNACC 1 cut(s) 1094
BstF5I GGATG 1 cut(s) 242
BstFNI CGCG 4 cut(s) 210, 212, 577, 705
BstH2I RGCGCY 3 cut(s) 218, 234, 522
BstHHI GCGC 7 cut(s) 212, 217, 233, 521, 705, 707, 786
BstKTI GATC 7 cut(s) 195, 326, 409, 418, 433, 478, 697
BstMBI GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
BstNI CCWGG 2 cut(s) 512, 1083
BstNSI RCATGY 1 cut(s) 1108
BstPI GGTNACC 1 cut(s) 1094
BstSCI CCNGG 2 cut(s) 510, 1081
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 4 cut(s) 210, 212, 577, 705
BstV1I GCAGC 5 cut(s) 157, 220, 384, 724, 1036
BstX2I RGATCY 3 cut(s) 406, 415, 475
BstYI RGATCY 3 cut(s) 406, 415, 475
BsuRI GGCC 7 cut(s) 374, 426, 515, 647, 761, 1200, 1266
BtgI CCRYGG 1 cut(s) 597
BtrI CACGTC 2 cut(s) 240, 606
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 944
BveI ACCTGC 1 cut(s) 1096
Cac8I GCNNGC 5 cut(s) 517, 675, 705, 742, 763
CaiI CAGNNNCTG 1 cut(s) 1088
CfoI GCGC 7 cut(s) 212, 217, 233, 521, 705, 707, 786
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 7 cut(s) 372, 373, 425, 760, 1085, 1199, 1265
CseI GACGC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 1293
CviAII CATG 2 cut(s) 412, 1105
CviQI GTAC 1 cut(s) 1293
DdeI CTNAG 1 cut(s) 918
DinI GGCGCC 2 cut(s) 216, 520
DpnI GATC 7 cut(s) 194, 325, 408, 417, 432, 477, 696
DpnII GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
DrdI GACNNNNNNGTC 1 cut(s) 1092
DriI GACNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 1092
Eam1104I CTCTTC 4 cut(s) 4, 271, 485, 557
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 4 cut(s) 4, 271, 485, 557
EciI GGCGGA 4 cut(s) 325, 436, 514, 570
Eco24I GRGCYC 2 cut(s) 296, 376
Eco47I GGWCC 1 cut(s) 1085
Eco47III AGCGCT 1 cut(s) 232
Eco57I CTGAAG 3 cut(s) 785, 968, 1281
Eco91I GGTNACC 1 cut(s) 1094
EcoO109I RGGNCCY 3 cut(s) 372, 1085, 1265
EcoO65I GGTNACC 1 cut(s) 1094
EcoRII CCWGG 2 cut(s) 510, 1081
EcoT38I GRGCYC 2 cut(s) 296, 376
EgeI GGCGCC 2 cut(s) 216, 520
EheI GGCGCC 2 cut(s) 216, 520
FaeI CATG 2 cut(s) 415, 1108
FaqI GGGAC 1 cut(s) 863
FatI CATG 2 cut(s) 411, 1104
FauI CCCGC 2 cut(s) 361, 770
FblI GTMKAC 2 cut(s) 611, 617
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 2 cut(s) 296, 376
FspBI CTAG 1 cut(s) 1137
GlaI GCGC 7 cut(s) 211, 216, 232, 520, 704, 706, 785
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 494
HaeII RGCGCY 3 cut(s) 218, 234, 522
HaeIII GGCC 7 cut(s) 374, 426, 515, 647, 761, 1200, 1266
HapII CCGG 6 cut(s) 367, 394, 401, 423, 516, 665
HgaI GACGC 1 cut(s) 561
HhaI GCGC 7 cut(s) 212, 217, 233, 521, 705, 707, 786
Hin1I GRCGYC 4 cut(s) 215, 519, 572, 614
Hin1II CATG 2 cut(s) 415, 1108
Hin6I GCGC 7 cut(s) 210, 215, 231, 519, 703, 705, 784
HinP1I GCGC 7 cut(s) 210, 215, 231, 519, 703, 705, 784
HincII GTYRAC 2 cut(s) 612, 618
HindII GTYRAC 2 cut(s) 612, 618
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 3 cut(s) 205, 688, 1004
HpaII CCGG 6 cut(s) 367, 394, 401, 423, 516, 665
HphI GGTGA 5 cut(s) 214, 356, 430, 644, 1088
Hpy166II GTNNAC 3 cut(s) 601, 612, 618
Hpy188I TCNGA 9 cut(s) 202, 323, 382, 795, 804, 864, 1003, 1183, 1261
Hpy188III TCNNGA 3 cut(s) 692, 844, 1252
Hpy8I GTNNAC 3 cut(s) 601, 612, 618
HpyAV CCTTC 8 cut(s) 171, 445, 646, 751, 809, 946, 1163, 1256
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 3 cut(s) 239, 605, 614
HpyCH4V TGCA 5 cut(s) 76, 1024, 1108, 1192, 1280
HpyF3I CTNAG 1 cut(s) 918
HpySE526I ACGT 3 cut(s) 239, 605, 614
Hsp92I GRCGYC 4 cut(s) 215, 519, 572, 614
Hsp92II CATG 2 cut(s) 415, 1108
HspAI GCGC 7 cut(s) 210, 215, 231, 519, 703, 705, 784
KasI GGCGCC 2 cut(s) 214, 518
KroI GCCGGC 1 cut(s) 515
KroNI GCCGGC 1 cut(s) 517
Kzo9I GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
LmnI GCTCC 3 cut(s) 513, 599, 907
Lsp1109I GCAGC 5 cut(s) 157, 220, 384, 724, 1036
LweI GCATC 3 cut(s) 919, 1020, 1101
MaeI CTAG 1 cut(s) 1137
MaeII ACGT 3 cut(s) 239, 605, 614
MaeIII GTNAC 3 cut(s) 1094, 1148, 1212
MalI GATC 7 cut(s) 194, 325, 408, 417, 432, 477, 696
MboI GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
MboII GAAGA 6 cut(s) 21, 149, 258, 472, 574, 961
MflI RGATCY 3 cut(s) 406, 415, 475
MhlI GDGCHC 2 cut(s) 296, 376
MluCI AATT 1 cut(s) 1065
Mly113I GGCGCC 2 cut(s) 215, 519
MlyI GAGTC 1 cut(s) 682
MroNI GCCGGC 1 cut(s) 515
MseI TTAA 3 cut(s) 885, 1122, 1303
MslI CAYNNNNRTG 2 cut(s) 23, 1109
MspA1I CMGCKG 1 cut(s) 546
MspCI CTTAAG 1 cut(s) 884
MspI CCGG 6 cut(s) 367, 394, 401, 423, 516, 665
MspR9I CCNGG 2 cut(s) 512, 1083
MteI GCGCNGCGC 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 1026
MvaI CCWGG 2 cut(s) 512, 1083
MvnI CGCG 4 cut(s) 210, 212, 577, 705
NaeI GCCGGC 1 cut(s) 517
NarI GGCGCC 2 cut(s) 215, 519
NdeII GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
NgoMIV GCCGGC 1 cut(s) 515
NlaIII CATG 2 cut(s) 415, 1108
NlaIV GGNNCC 5 cut(s) 216, 374, 427, 520, 1267
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 1 cut(s) 1094
NspI RCATGY 1 cut(s) 1108
PauI GCGCGC 1 cut(s) 703
PcsI WCGNNNNNNNCGW 2 cut(s) 611, 614
PctI GAATGC 1 cut(s) 1026
PdiI GCCGGC 1 cut(s) 517
PfeI GAWTC 2 cut(s) 205, 1004
PleI GAGTC 1 cut(s) 682
PluTI GGCGCC 2 cut(s) 218, 522
PpsI GAGTC 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 1085
Psp5II RGGWCCY 1 cut(s) 1085
Psp6I CCWGG 2 cut(s) 510, 1081
PspEI GGTNACC 1 cut(s) 1094
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 510, 1081
PspN4I GGNNCC 5 cut(s) 216, 374, 427, 520, 1267
PspOMI GGGCCC 1 cut(s) 372
PspPI GGNCC 7 cut(s) 372, 373, 425, 760, 1085, 1199, 1265
PspPPI RGGWCCY 1 cut(s) 1085
PstNI CAGNNNCTG 1 cut(s) 1088
PsuI RGATCY 3 cut(s) 406, 415, 475
PteI GCGCGC 1 cut(s) 703
RsaI GTAC 1 cut(s) 1294
RsaNI GTAC 1 cut(s) 1293
RseI CAYNNNNRTG 2 cut(s) 23, 1109
SalI GTCGAC 2 cut(s) 610, 616
SaqAI TTAA 3 cut(s) 885, 1122, 1303
Sau3AI GATC 7 cut(s) 192, 323, 406, 415, 430, 475, 694
Sau96I GGNCC 7 cut(s) 372, 373, 425, 760, 1085, 1199, 1265
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 2 cut(s) 512, 1083
SduI GDGCHC 2 cut(s) 296, 376
SfaNI GCATC 3 cut(s) 919, 1020, 1101
SfoI GGCGCC 2 cut(s) 216, 520
SgrDI CGTCGACG 2 cut(s) 610, 616
SinI GGWCC 1 cut(s) 1085
SmiMI CAYNNNNRTG 2 cut(s) 23, 1109
SmlI CTYRAG 3 cut(s) 779, 884, 968
SmoI CTYRAG 3 cut(s) 779, 884, 968
Sse9I AATT 1 cut(s) 1065
SspDI GGCGCC 2 cut(s) 214, 518
SspMI CTAG 1 cut(s) 1137
StyD4I CCNGG 2 cut(s) 510, 1081
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 3 cut(s) 242, 608, 617
TaqI TCGA 5 cut(s) 495, 501, 611, 617, 892
TasI AATT 1 cut(s) 1065
TfiI GAWTC 2 cut(s) 205, 1004
Tru1I TTAA 3 cut(s) 885, 1122, 1303
Tru9I TTAA 3 cut(s) 885, 1122, 1303
TscAI CASTG 1 cut(s) 951
TseFI GTSAC 1 cut(s) 1094
TseI GCWGC 5 cut(s) 170, 233, 397, 737, 1024
Tsp45I GTSAC 1 cut(s) 1094
TspDTI ATGAA 4 cut(s) 307, 954, 1007, 1145
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 1 cut(s) 951
Vha464I CTTAAG 1 cut(s) 884
VpaK11BI GGWCC 1 cut(s) 1085
XceI RCATGY 1 cut(s) 1108
XmiI GTMKAC 2 cut(s) 611, 617
XspI CTAG 1 cut(s) 1137
ZraI GACGTC 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.