Rh5CG522400
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013648
Physical Location & Seq
Reverse (-)
73299831 .. 73302878
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG522400.1

Sequence Viewer

Length: 1113 bp
ATGTCCACACTTCCACAACAAGAACCACAACCACCAAACCCAAACCCAAACCCAATGCAGCAACATCCACTCCCCAATTCCAATCCCAATCCCAATCCCAACCCTAACCCTAATTCCCTTCTTCTTCCCAGAACCATTGGCAATGCCAAAACCCGCGACGCTGCCAATGCTGCTTCTGCTTCTTCTTCTCCTGATGCGAATGTGAATGTGAATGTGAATGCCATCTCCTCCTCCGAGAATCGCGCCGCTCCATTCACCACCAGCGCTGCCACGTCATCCTCCTCCTCCTCCTCTTCCTCCTCCTCCGCTACAACAATGCTGGGCAGCACCACTTCCCCCGTTCCCAACAACAACAACCACAACCACCCTTTCATTAGGTCCACCGCCGCTGCCACCGGTGGGACCCCCCACCACCACCACAGCAGCGGCACGAGCATAAACCACAGGAGGGCCCACTCGGAGGTCAGCTTTCGGTTGCCGGAGGACCTCATGGATCTCTCCGGCCCCGATCCCTTCAACGGCGCCGGATCCTCCACCGACGACTTGGGATCCGAGGAGGATCTCTTCTCTACCTACATCGACCTCGACAAGCTCCAGGCCGGCGCCGCTGACGACAATGGGCCTGATGATAACAAGGGCCCTAATGGGCCCAATGAGGACAACGGCGGCGTCGGAGAGAAGCGGCAGTCGCGGCACAGGCACAGTAGCTCGGTGGATGCGTCGTCCACGTCGACGGGCGTGTTCGGAGAGGTCATGGAGGCCAAGAAGGCAATGCCGCCTGATAAGCTCGCCGAGCTTTGGAATCTTGATCCAAAGCGCGCCAAAAGGATATTAGCAAATCGGCAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCCCGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAAACAGAAGCAACCACTCTTTCTGCCCAACTCACATTATTCCAGAGGGACACAACGGGTCTGAGCACTGAAAACACAGAGCTTAAGCTTCGGTTACAAGCTATGGAACAACAAGCTCAGTTGCGAGATTGTAAGGAACATACGACTTGTATCATATATGAAACTTTTCAGAAATATTTCATTCTTTATTATCTCTAA

Protein Analysis

370

Amino Acids

40.02

Weight (kDa)

6.18

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 269 - 319 3e-06 Basic region leucine zipper
bZIP_1 PF00170 272 - 320 3.1e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica Prupe.6G041400_v2.0.a1
pyrus_communis pycom03g04130 pycom11g04360
rosa_chinensis RchiOBHm_Chr5g0073151
rosa_laevigata RLG00000036369
rosa_multiflora Rmu_sc0021999.1_g000001
rosa_roxburghii Rroxscaffold_1G00008030
rosa_rugosa Rorug05G0421500
rosa_samantha Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana Rw5G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 521, 602
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 731
AccII CGCG 4 cut(s) 156, 243, 691, 819
AclWI GGATC 8 cut(s) 501, 503, 522, 535, 543, 556, 567, 803
AcyI GRCGYC 3 cut(s) 522, 603, 669
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 5 cut(s) 399, 448, 460, 518, 798
AflII CTTAAG 1 cut(s) 998
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 517, 917
AjiI CACGTC 2 cut(s) 273, 729
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 9 cut(s) 468, 592, 708, 787, 796, 997, 1003, 1016, 1031
AluI AGCT 9 cut(s) 468, 592, 708, 787, 796, 997, 1003, 1016, 1031
Alw21I GWGCWC 1 cut(s) 983
AlwI GGATC 8 cut(s) 501, 503, 522, 535, 543, 556, 567, 803
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 8 cut(s) 450, 502, 597, 620, 637, 647, 759, 873
ApaI GGGCCC 3 cut(s) 454, 641, 651
ApeKI GCWGC 8 cut(s) 58, 161, 170, 266, 324, 389, 423, 851
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 2 cut(s) 1080, 1091
AspLEI GCGC 7 cut(s) 245, 266, 524, 605, 819, 821, 900
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 3 cut(s) 378, 402, 484
BaeGI GKGCMC 3 cut(s) 454, 641, 651
BamHI GGATCC 2 cut(s) 527, 548
BanI GGYRCC 2 cut(s) 521, 602
BanII GRGCYC 3 cut(s) 454, 641, 651
BauI CACGAG 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 983
BbvI GCAGC 8 cut(s) 70, 148, 157, 253, 336, 376, 435, 838
BccI CCATC 1 cut(s) 230
BceAI ACGGC 2 cut(s) 535, 679
BciT130I CCWGG 1 cut(s) 596
BfoI RGCGCY 3 cut(s) 267, 525, 606
BfrI CTTAAG 1 cut(s) 998
BglI GCCNNNNNGGC 1 cut(s) 767
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 3 cut(s) 378, 402, 484
BmgBI CACGTC 2 cut(s) 273, 729
BmrFI CCNGG 1 cut(s) 596
BmsI GCATC 2 cut(s) 184, 706
BpmI CTGGAG 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 914
BsaHI GRCGYC 3 cut(s) 522, 603, 669
BsaJI CCNNGG 1 cut(s) 552
BsaWI WCCGGW 1 cut(s) 395
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 5 cut(s) 399, 448, 460, 518, 798
Bse118I RCCGGY 2 cut(s) 395, 599
Bse3DI GCAATG 2 cut(s) 148, 777
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 3 cut(s) 64, 275, 721
BseLI CCNNNNNNNGG 5 cut(s) 399, 448, 460, 518, 798
BseMI GCAATG 2 cut(s) 148, 777
BseMII CTCAG 2 cut(s) 968, 1046
BsePI GCGCGC 1 cut(s) 817
BseRI GAGGAG 9 cut(s) 217, 220, 271, 274, 277, 280, 289, 292, 569
BseSI GKGCMC 3 cut(s) 454, 641, 651
BseXI GCAGC 8 cut(s) 70, 148, 157, 253, 336, 376, 435, 838
BseYI CCCAGC 1 cut(s) 319
Bsh1236I CGCG 4 cut(s) 156, 243, 691, 819
BshFI GGCC 8 cut(s) 452, 504, 599, 622, 639, 649, 761, 875
BshNI GGYRCC 2 cut(s) 521, 602
BshTI ACCGGT 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 983
BsiSI CCGG 5 cut(s) 396, 479, 501, 525, 600
BslFI GGGAC 2 cut(s) 415, 977
BslI CCNNNNNNNGG 5 cut(s) 399, 448, 460, 518, 798
BsmFI GGGAC 2 cut(s) 415, 977
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 8 cut(s) 452, 504, 599, 622, 639, 649, 761, 875
Bsp120I GGGCCC 3 cut(s) 450, 637, 647
Bsp1286I GDGCHC 4 cut(s) 454, 641, 651, 983
Bsp143I GATC 6 cut(s) 493, 508, 527, 548, 559, 808
BspANI GGCC 8 cut(s) 452, 504, 599, 622, 639, 649, 761, 875
BspCNI CTCAG 2 cut(s) 969, 1045
BspFNI CGCG 4 cut(s) 156, 243, 691, 819
BspPI GGATC 8 cut(s) 501, 503, 522, 535, 543, 556, 567, 803
BspT107I GGYRCC 2 cut(s) 521, 602
BspTI CTTAAG 1 cut(s) 998
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 148, 777
BsrFI RCCGGY 2 cut(s) 395, 599
BssAI RCCGGY 2 cut(s) 395, 599
BssECI CCNNGG 1 cut(s) 552
BssHII GCGCGC 1 cut(s) 817
BssMI GATC 6 cut(s) 493, 508, 527, 548, 559, 808
BssNI GRCGYC 3 cut(s) 522, 603, 669
BssSI CACGAG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 430
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 2 cut(s) 298, 569
BstACI GRCGYC 3 cut(s) 522, 603, 669
BstAFI CTTAAG 1 cut(s) 998
BstC8I GCNNGC 5 cut(s) 601, 789, 819, 856, 877
BstDEI CTNAG 2 cut(s) 977, 1032
BstF5I GGATG 3 cut(s) 64, 275, 721
BstFNI CGCG 4 cut(s) 156, 243, 691, 819
BstH2I RGCGCY 3 cut(s) 267, 525, 606
BstHHI GCGC 7 cut(s) 245, 266, 524, 605, 819, 821, 900
BstKTI GATC 6 cut(s) 496, 511, 530, 551, 562, 811
BstMBI GATC 6 cut(s) 493, 508, 527, 548, 559, 808
BstNI CCWGG 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 594
BstSLI GKGCMC 3 cut(s) 454, 641, 651
BstUI CGCG 4 cut(s) 156, 243, 691, 819
BstV1I GCAGC 8 cut(s) 70, 148, 157, 253, 336, 376, 435, 838
BstX2I RGATCY 4 cut(s) 493, 527, 548, 559
BstYI RGATCY 4 cut(s) 493, 527, 548, 559
BsuRI GGCC 8 cut(s) 452, 504, 599, 622, 639, 649, 761, 875
BtrI CACGTC 2 cut(s) 273, 729
BtsCI GGATG 3 cut(s) 64, 275, 721
BtsIMutI CAGTG 1 cut(s) 981
Cac8I GCNNGC 5 cut(s) 601, 789, 819, 856, 877
CfoI GCGC 7 cut(s) 245, 266, 524, 605, 819, 821, 900
Cfr10I RCCGGY 2 cut(s) 395, 599
CseI GACGC 3 cut(s) 167, 658, 708
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 2 cut(s) 490, 754
DdeI CTNAG 2 cut(s) 977, 1032
DinI GGCGCC 2 cut(s) 523, 604
DpnI GATC 6 cut(s) 495, 510, 529, 550, 561, 810
DpnII GATC 6 cut(s) 493, 508, 527, 548, 559, 808
Eam1104I CTCTTC 2 cut(s) 298, 569
EarI CTCTTC 2 cut(s) 298, 569
Eco24I GRGCYC 3 cut(s) 454, 641, 651
Eco47I GGWCC 3 cut(s) 378, 402, 484
Eco47III AGCGCT 1 cut(s) 265
EcoO109I RGGNCCY 5 cut(s) 402, 450, 484, 637, 638
EcoRII CCWGG 1 cut(s) 594
EcoT38I GRGCYC 3 cut(s) 454, 641, 651
EgeI GGCGCC 2 cut(s) 523, 604
EheI GGCGCC 2 cut(s) 523, 604
FaeI CATG 2 cut(s) 493, 757
FaqI GGGAC 2 cut(s) 415, 977
FatI CATG 2 cut(s) 489, 753
FauI CCCGC 2 cut(s) 161, 884
FblI GTMKAC 1 cut(s) 731
FokI GGATG 3 cut(s) 51, 262, 728
FriOI GRGCYC 3 cut(s) 454, 641, 651
GlaI GCGC 7 cut(s) 244, 265, 523, 604, 818, 820, 899
GsaI CCCAGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 3 cut(s) 267, 525, 606
HaeIII GGCC 8 cut(s) 452, 504, 599, 622, 639, 649, 761, 875
HapII CCGG 5 cut(s) 396, 479, 501, 525, 600
HgaI GACGC 3 cut(s) 167, 658, 708
HhaI GCGC 7 cut(s) 245, 266, 524, 605, 819, 821, 900
Hin1I GRCGYC 3 cut(s) 522, 603, 669
Hin1II CATG 2 cut(s) 493, 757
Hin6I GCGC 7 cut(s) 243, 264, 522, 603, 817, 819, 898
HinP1I GCGC 7 cut(s) 243, 264, 522, 603, 817, 819, 898
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 2 cut(s) 238, 802
HpaII CCGG 5 cut(s) 396, 479, 501, 525, 600
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 4 cut(s) 6, 381, 726, 732
Hpy188I TCNGA 8 cut(s) 235, 460, 553, 674, 746, 909, 978, 1086
Hpy188III TCNNGA 3 cut(s) 191, 806, 958
Hpy8I GTNNAC 4 cut(s) 6, 381, 726, 732
Hpy99I CGWCG 6 cut(s) 161, 542, 674, 724, 733, 736
HpyAV CCTTC 5 cut(s) 128, 523, 760, 865, 923
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 2 cut(s) 272, 728
HpyCH4V TGCA 1 cut(s) 58
HpyF3I CTNAG 2 cut(s) 977, 1032
HpySE526I ACGT 2 cut(s) 272, 728
Hsp92I GRCGYC 3 cut(s) 522, 603, 669
Hsp92II CATG 2 cut(s) 493, 757
HspAI GCGC 7 cut(s) 243, 264, 522, 603, 817, 819, 898
KasI GGCGCC 2 cut(s) 521, 602
KflI GGGWCCC 1 cut(s) 402
KroI GCCGGC 1 cut(s) 599
KroNI GCCGGC 1 cut(s) 601
Kzo9I GATC 6 cut(s) 493, 508, 527, 548, 559, 808
LmnI GCTCC 2 cut(s) 253, 597
Lsp1109I GCAGC 8 cut(s) 70, 148, 157, 253, 336, 376, 435, 838
LweI GCATC 2 cut(s) 184, 706
MaeII ACGT 2 cut(s) 272, 728
MaeIII GTNAC 1 cut(s) 1008
MalI GATC 6 cut(s) 495, 510, 529, 550, 561, 810
MbiI CCGCTC 1 cut(s) 248
MboI GATC 6 cut(s) 493, 508, 527, 548, 559, 808
MboII GAAGA 6 cut(s) 113, 116, 174, 177, 285, 556
MflI RGATCY 4 cut(s) 493, 527, 548, 559
MhlI GDGCHC 4 cut(s) 454, 641, 651, 983
MluCI AATT 2 cut(s) 76, 112
Mly113I GGCGCC 2 cut(s) 522, 603
MmeI TCCRAC 1 cut(s) 652
MroNI GCCGGC 1 cut(s) 599
MroXI GAANNNNTTC 2 cut(s) 1080, 1091
MseI TTAA 1 cut(s) 999
MspA1I CMGCKG 3 cut(s) 389, 426, 608
MspCI CTTAAG 1 cut(s) 998
MspI CCGG 5 cut(s) 396, 479, 501, 525, 600
MspR9I CCNGG 1 cut(s) 596
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 4 cut(s) 156, 243, 691, 819
NaeI GCCGGC 1 cut(s) 601
NarI GGCGCC 2 cut(s) 522, 603
NdeII GATC 6 cut(s) 493, 508, 527, 548, 559, 808
NgoMIV GCCGGC 1 cut(s) 599
NlaIII CATG 2 cut(s) 493, 757
NmeAIII GCCGAG 1 cut(s) 817
PauI GCGCGC 1 cut(s) 817
PcsI WCGNNNNNNNCGW 2 cut(s) 716, 728
PctI GAATGC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 601
PdmI GAANNNNTTC 2 cut(s) 1080, 1091
PfeI GAWTC 2 cut(s) 238, 802
PinAI ACCGGT 1 cut(s) 395
PluTI GGCGCC 2 cut(s) 525, 606
PpuMI RGGWCCY 2 cut(s) 402, 484
Psp5II RGGWCCY 2 cut(s) 402, 484
Psp6I CCWGG 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 1 cut(s) 594
PspOMI GGGCCC 3 cut(s) 450, 637, 647
PspPPI RGGWCCY 2 cut(s) 402, 484
PsuI RGATCY 4 cut(s) 493, 527, 548, 559
PteI GCGCGC 1 cut(s) 817
SalI GTCGAC 1 cut(s) 730
SaqAI TTAA 1 cut(s) 999
Sau3AI GATC 6 cut(s) 493, 508, 527, 548, 559, 808
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 4 cut(s) 454, 641, 651, 983
SfaNI GCATC 2 cut(s) 184, 706
SfoI GGCGCC 2 cut(s) 523, 604
SgrAI CRCCGGYG 1 cut(s) 395
SgrDI CGTCGACG 1 cut(s) 730
SinI GGWCC 3 cut(s) 378, 402, 484
SmlI CTYRAG 2 cut(s) 893, 998
SmoI CTYRAG 2 cut(s) 893, 998
Sse9I AATT 2 cut(s) 76, 112
SspDI GGCGCC 2 cut(s) 521, 602
SspI AATATT 1 cut(s) 1091
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 2 cut(s) 275, 731
TaqI TCGA 3 cut(s) 579, 585, 731
TasI AATT 2 cut(s) 76, 112
TauI GCSGC 8 cut(s) 248, 389, 429, 608, 669, 685, 694, 778
TfiI GAWTC 2 cut(s) 238, 802
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TscAI CASTG 1 cut(s) 988
TseI GCWGC 8 cut(s) 58, 161, 170, 266, 324, 389, 423, 851
TspDTI ATGAA 3 cut(s) 361, 1084, 1089
TspRI CASTG 1 cut(s) 988
Vha464I CTTAAG 1 cut(s) 998
VpaK11BI GGWCC 3 cut(s) 378, 402, 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 2 cut(s) 1080, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.