Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021999.1

Orthogroup ID

OG0013648

Physical Location & Seq

Genomic Coordinates Reverse (-)

1378 .. 3391

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021999.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgctgggcagcaccacttcccccgttcccaacaacaacaaccaccctttcattaggtccaccgccgctgccaccggtgggaccccccaccaccacagcagcggcacgagcataaaccacaggagggcccactcggaggtcagctttcggttgccggaggacctcatggatctctccggccccgatcccttcaacggcgccggatcctccaccgacgacttgggatccgaggaggatctcttctccacctacatcgacctcgacaagctccaggccggcgccgctgacgacaatgggcctgatgataacaagggccctaatgggcccaatgaggacaacggcggcgtcggagagaagcggcagtcgcggcacaggcacagtagctcggtggatgcgtcgtccacgtcgacgggcgtgttcggagaggtcatggaggccaagaaggcaatgccgcctgataagctcgccgagctttggaatcttgatccaaagcgcgccaaaaggatattagcaaatcggcagtctgctgctcgctcaaaagagaggaaggcccgctatatacaagaacttgagcgcaaagttcagacccttcaaacagaagcaaccactctttctgcccaactcacattattccagagggacacaacaggtctgagcactgaaaacacagagcttaagcttcggttacaagctatggaacaacaagctcagttgcgagattctctaaacgaagcactgaagaaggaggttgagaggctcaaggttgccacaggggagatgatgagccattcagaatcattcaacttgggaatgcaccaaatgccgtacaacaacaacccatccgcttattttccaattacacaacagcaaccaggacctgctggtcaccagaatatgcagttgccaccattcaatcattcccagtctagtatgcccagtcaccatcttcatcagccaaactctcatactctttcagatattatgcagaacggccctgttggtcagttacaggggcttgacatcagtaataaaatgccacatctcgtgaagtctgaaggcccctcgctttctgcaagtgagagtagtaccactttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

365

Amino Acids

39.89

Weight (kDa)

6.09

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica	MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica	Prupe.6G041400_v2.0.a1
pyrus_communis	pycom03g04130 pycom11g04360
rosa_chinensis	RchiOBHm_Chr5g0073151
rosa_laevigata	RLG00000036369
rosa_multiflora	Rmu_sc0021999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008030
rosa_rugosa	Rorug05G0421500
rosa_samantha	Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana	Rw5G044460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	882
Acc36I	ACCTGC	1 cut(s)	886
AccB1I	GGYRCC	2 cut(s)	197, 278
AccI	GTMKAC	1 cut(s)	407
AccII	CGCG	2 cut(s)	367, 495
AclWI	GGATC	8 cut(s)	177, 179, 198, 211, 219, 232, 243, 479
AcuI	CTGAAG	2 cut(s)	758, 1074
AcyI	GRCGYC	3 cut(s)	198, 279, 345
AfaI	GTAC	2 cut(s)	827, 1087
AfiI	CCNNNNNNNGG	5 cut(s)	78, 124, 136, 194, 474
AflII	CTTAAG	1 cut(s)	674
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	193, 593, 802, 913
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	2 cut(s)	270, 871
AluBI	AGCT	9 cut(s)	144, 268, 384, 463, 472, 673, 679, 692, 707
AluI	AGCT	9 cut(s)	144, 268, 384, 463, 472, 673, 679, 692, 707
Alw21I	GWGCWC	1 cut(s)	659
AlwI	GGATC	8 cut(s)	177, 179, 198, 211, 219, 232, 243, 479
AlwNI	CAGNNNCTG	1 cut(s)	878
ApaI	GGGCCC	3 cut(s)	130, 317, 327
ApeKI	GCWGC	4 cut(s)	9, 68, 99, 527
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AsiGI	ACCGGT	1 cut(s)	74
AspLEI	GCGC	5 cut(s)	200, 281, 495, 497, 576
AsuHPI	GGTGA	2 cut(s)	878, 932
AvaII	GGWCC	4 cut(s)	57, 81, 160, 875
BaeGI	GKGCMC	3 cut(s)	130, 317, 327
BamHI	GGATCC	2 cut(s)	203, 224
BanI	GGYRCC	2 cut(s)	197, 278
BanII	GRGCYC	3 cut(s)	130, 317, 327
BauI	CACGAG	2 cut(s)	106, 1043
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	4 cut(s)	21, 55, 111, 514
BccI	CCATC	2 cut(s)	847, 951
BceAI	ACGGC	4 cut(s)	211, 355, 808, 1006
BciT130I	CCWGG	2 cut(s)	272, 873
BfaI	CTAG	1 cut(s)	927
BfoI	RGCGCY	2 cut(s)	201, 282
BfrI	CTTAAG	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	886
BglI	GCCNNNNNGGC	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	272, 873
Bme18I	GGWCC	4 cut(s)	57, 81, 160, 875
BmgBI	CACGTC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	272, 873
BmrI	ACTGGG	2 cut(s)	916, 930
BmsI	GCATC	1 cut(s)	382
BmuI	ACTGGG	2 cut(s)	916, 930
BpmI	CTGGAG	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	590, 743
BsaHI	GRCGYC	3 cut(s)	198, 279, 345
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 124, 136, 194, 474
Bse118I	RCCGGY	2 cut(s)	74, 275
Bse1I	ACTGG	2 cut(s)	922, 936
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	272, 873
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	397, 839
BseLI	CCNNNNNNNGG	5 cut(s)	78, 124, 136, 194, 474
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	644, 722
BseNI	ACTGG	2 cut(s)	922, 936
BsePI	GCGCGC	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	3 cut(s)	130, 317, 327
BseXI	GCAGC	4 cut(s)	21, 55, 111, 514
BseYI	CCCAGC	1 cut(s)	4
Bsh1236I	CGCG	2 cut(s)	367, 495
BshNI	GGYRCC	2 cut(s)	197, 278
BshTI	ACCGGT	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	5 cut(s)	75, 155, 177, 201, 276
BslFI	GGGAC	2 cut(s)	94, 653
BslI	CCNNNNNNNGG	5 cut(s)	78, 124, 136, 194, 474
BsmFI	GGGAC	2 cut(s)	94, 653
BsmI	GAATGC	1 cut(s)	816
Bsp120I	GGGCCC	3 cut(s)	126, 313, 323
Bsp1286I	GDGCHC	4 cut(s)	130, 317, 327, 659
Bsp143I	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
BspCNI	CTCAG	2 cut(s)	645, 721
BspFNI	CGCG	2 cut(s)	367, 495
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	8 cut(s)	177, 179, 198, 211, 219, 232, 243, 479
BspT107I	GGYRCC	2 cut(s)	197, 278
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	2 cut(s)	74, 275
BsrI	ACTGG	2 cut(s)	922, 936
BssAI	RCCGGY	2 cut(s)	74, 275
BssECI	CCNNGG	1 cut(s)	228
BssHII	GCGCGC	1 cut(s)	493
BssMI	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
BssNI	GRCGYC	3 cut(s)	198, 279, 345
BssSI	CACGAG	2 cut(s)	106, 1043
Bst2BI	CACGAG	2 cut(s)	106, 1043
Bst2UI	CCWGG	2 cut(s)	272, 873
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	3 cut(s)	198, 279, 345
BstAFI	CTTAAG	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	820
BstC8I	GCNNGC	5 cut(s)	277, 465, 495, 532, 553
BstDEI	CTNAG	2 cut(s)	653, 708
BstEII	GGTNACC	1 cut(s)	884
BstF5I	GGATG	2 cut(s)	397, 839
BstFNI	CGCG	2 cut(s)	367, 495
BstH2I	RGCGCY	2 cut(s)	201, 282
BstHHI	GCGC	5 cut(s)	200, 281, 495, 497, 576
BstKTI	GATC	6 cut(s)	172, 187, 206, 227, 238, 487
BstMBI	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
BstMWI	GCNNNNNNNGC	9 cut(s)	108, 281, 364, 367, 373, 443, 460, 469, 820
BstNI	CCWGG	2 cut(s)	272, 873
BstPI	GGTNACC	1 cut(s)	884
BstSCI	CCNGG	2 cut(s)	270, 871
BstSLI	GKGCMC	3 cut(s)	130, 317, 327
BstUI	CGCG	2 cut(s)	367, 495
BstV1I	GCAGC	4 cut(s)	21, 55, 111, 514
BstX2I	RGATCY	4 cut(s)	169, 203, 224, 235
BstYI	RGATCY	4 cut(s)	169, 203, 224, 235
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	2 cut(s)	397, 839
BtsIMutI	CAGTG	2 cut(s)	657, 734
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	5 cut(s)	277, 465, 495, 532, 553
CaiI	CAGNNNCTG	1 cut(s)	878
CfoI	GCGC	5 cut(s)	200, 281, 495, 497, 576
Cfr10I	RCCGGY	2 cut(s)	74, 275
CseI	GACGC	2 cut(s)	334, 384
Csp6I	GTAC	2 cut(s)	826, 1086
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	2 cut(s)	166, 430
CviQI	GTAC	2 cut(s)	826, 1086
DdeI	CTNAG	2 cut(s)	653, 708
DinI	GGCGCC	2 cut(s)	199, 280
DpnI	GATC	6 cut(s)	171, 186, 205, 226, 237, 486
DpnII	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
DrdI	GACNNNNNNGTC	1 cut(s)	882
DseDI	GACNNNNNNGTC	1 cut(s)	882
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco24I	GRGCYC	3 cut(s)	130, 317, 327
Eco47I	GGWCC	4 cut(s)	57, 81, 160, 875
Eco57I	CTGAAG	2 cut(s)	758, 1074
Eco91I	GGTNACC	1 cut(s)	884
EcoO109I	RGGNCCY	7 cut(s)	81, 126, 160, 313, 314, 875, 1058
EcoO65I	GGTNACC	1 cut(s)	884
EcoRII	CCWGG	2 cut(s)	270, 871
EcoT38I	GRGCYC	3 cut(s)	130, 317, 327
EgeI	GGCGCC	2 cut(s)	199, 280
EheI	GGCGCC	2 cut(s)	199, 280
FaeI	CATG	2 cut(s)	169, 433
FaqI	GGGAC	2 cut(s)	94, 653
FatI	CATG	2 cut(s)	165, 429
FauI	CCCGC	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	407
FokI	GGATG	2 cut(s)	404, 826
FriOI	GRGCYC	3 cut(s)	130, 317, 327
FspBI	CTAG	1 cut(s)	927
GlaI	GCGC	5 cut(s)	199, 280, 494, 496, 575
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	2 cut(s)	201, 282
HapII	CCGG	5 cut(s)	75, 155, 177, 201, 276
HgaI	GACGC	2 cut(s)	334, 384
HhaI	GCGC	5 cut(s)	200, 281, 495, 497, 576
Hin1I	GRCGYC	3 cut(s)	198, 279, 345
Hin1II	CATG	2 cut(s)	169, 433
Hin6I	GCGC	5 cut(s)	198, 279, 493, 495, 574
HinP1I	GCGC	5 cut(s)	198, 279, 493, 495, 574
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	3 cut(s)	478, 719, 794
HpaII	CCGG	5 cut(s)	75, 155, 177, 201, 276
HphI	GGTGA	2 cut(s)	878, 932
Hpy166II	GTNNAC	3 cut(s)	60, 402, 408
Hpy188I	TCNGA	9 cut(s)	136, 229, 350, 422, 585, 654, 793, 976, 1054
Hpy188III	TCNNGA	3 cut(s)	482, 634, 1045
Hpy8I	GTNNAC	3 cut(s)	60, 402, 408
Hpy99I	CGWCG	5 cut(s)	218, 350, 400, 409, 412
HpyAV	CCTTC	6 cut(s)	199, 436, 541, 599, 736, 1049
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	4 cut(s)	814, 898, 985, 1073
HpyF10VI	GCNNNNNNNGC	9 cut(s)	108, 281, 364, 367, 373, 443, 460, 469, 820
HpyF3I	CTNAG	2 cut(s)	653, 708
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	3 cut(s)	198, 279, 345
Hsp92II	CATG	2 cut(s)	169, 433
HspAI	GCGC	5 cut(s)	198, 279, 493, 495, 574
KasI	GGCGCC	2 cut(s)	197, 278
KflI	GGGWCCC	1 cut(s)	81
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	4 cut(s)	21, 55, 111, 514
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	927
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	4 cut(s)	684, 884, 938, 1005
MalI	GATC	6 cut(s)	171, 186, 205, 226, 237, 486
MboI	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
MboII	GAAGA	3 cut(s)	232, 751, 938
MflI	RGATCY	4 cut(s)	169, 203, 224, 235
MhlI	GDGCHC	4 cut(s)	130, 317, 327, 659
MluCI	AATT	1 cut(s)	855
Mly113I	GGCGCC	2 cut(s)	198, 279
MmeI	TCCRAC	1 cut(s)	328
MroNI	GCCGGC	1 cut(s)	275
MseI	TTAA	2 cut(s)	675, 1096
MspA1I	CMGCKG	3 cut(s)	68, 102, 284
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	5 cut(s)	75, 155, 177, 201, 276
MspR9I	CCNGG	2 cut(s)	272, 873
Mva1269I	GAATGC	1 cut(s)	816
MvaI	CCWGG	2 cut(s)	272, 873
MvnI	CGCG	2 cut(s)	367, 495
MwoI	GCNNNNNNNGC	9 cut(s)	108, 281, 364, 367, 373, 443, 460, 469, 820
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	2 cut(s)	198, 279
NdeII	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	169, 433
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	884, 938
PauI	GCGCGC	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	2 cut(s)	392, 404
PctI	GAATGC	1 cut(s)	816
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	478, 719, 794
PinAI	ACCGGT	1 cut(s)	74
PluTI	GGCGCC	2 cut(s)	201, 282
PpuMI	RGGWCCY	3 cut(s)	81, 160, 875
Psp5II	RGGWCCY	3 cut(s)	81, 160, 875
Psp6I	CCWGG	2 cut(s)	270, 871
PspEI	GGTNACC	1 cut(s)	884
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	2 cut(s)	270, 871
PspOMI	GGGCCC	3 cut(s)	126, 313, 323
PspPPI	RGGWCCY	3 cut(s)	81, 160, 875
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	4 cut(s)	169, 203, 224, 235
PteI	GCGCGC	1 cut(s)	493
RsaI	GTAC	2 cut(s)	827, 1087
RsaNI	GTAC	2 cut(s)	826, 1086
SalI	GTCGAC	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	675, 1096
Sau3AI	GATC	6 cut(s)	169, 184, 203, 224, 235, 484
ScrFI	CCNGG	2 cut(s)	272, 873
SduI	GDGCHC	4 cut(s)	130, 317, 327, 659
SfaNI	GCATC	1 cut(s)	382
SfoI	GGCGCC	2 cut(s)	199, 280
SgrAI	CRCCGGYG	1 cut(s)	74
SgrDI	CGTCGACG	1 cut(s)	406
SinI	GGWCC	4 cut(s)	57, 81, 160, 875
SmlI	CTYRAG	3 cut(s)	569, 674, 758
SmoI	CTYRAG	3 cut(s)	569, 674, 758
Sse9I	AATT	1 cut(s)	855
SspDI	GGCGCC	2 cut(s)	197, 278
SspMI	CTAG	1 cut(s)	927
StyD4I	CCNGG	2 cut(s)	270, 871
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	3 cut(s)	255, 261, 407
TasI	AATT	1 cut(s)	855
TauI	GCSGC	7 cut(s)	68, 105, 284, 345, 361, 370, 454
TfiI	GAWTC	3 cut(s)	478, 719, 794
Tru1I	TTAA	2 cut(s)	675, 1096
Tru9I	TTAA	2 cut(s)	675, 1096
TscAI	CASTG	2 cut(s)	664, 741
TseFI	GTSAC	2 cut(s)	884, 938
TseI	GCWGC	4 cut(s)	9, 68, 99, 527
Tsp45I	GTSAC	2 cut(s)	884, 938
TspDTI	ATGAA	2 cut(s)	40, 938
TspRI	CASTG	2 cut(s)	664, 741
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	4 cut(s)	57, 81, 160, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	407
XspI	CTAG	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.