pycom03g04130
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013648
Physical Location & Seq
Forward (+)
3235477 .. 3237833
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g04130.2

Sequence Viewer

Length: 1317 bp
ATGAAGCAAGATCCCCCCCTCCAACAATCCAACCCTAATCCTGATTTCTTCACCTTCAATTCCAATCCCATTACCAATCCCAAATCCAATCCAATCCCGCCGCTTCCTAGAAGCGTTGGCATTGACGGCAATGCCAATACTTCGGGATTAGCAGCCGCCGCCACGTCATCGTCTTCAACCTCGTTCACCACGTCCACATCGCTGAGCTTGGCGACAATGCTGGGCAATTCCGCCTCCCCTTTTATCCGGGAAGACGCGGACGGGTCCCACCACCACCACAATCACGGCGTGAGCCACAGGAAGGCCCACTCCGAGGTGAGCTTTCGGCTGCCGGAGGACATGATGGATCTGCCCGCCGCGGCGGCGGATCCGTTCAACGGAGGATCGTCGACGGCGAGTCTAGAGGAGATGGGATCGGAGGAGGACCTGTTCTCCACGTACATTGACCTGGACAAGCTCGGTGGGTCCAATAATTCCTCGGATCAGAATAGTGGCGGCAATGATGGGCCTGATGGTGGGGCTAATGGTGGGCCCATTGGCAATGCCGGTGGCGGTGAAGGAGGAGGAGGAGGAGAGAAGAGGCCGTCCAGACACCGGTATAGCAGCTCGGTAGATGGGTCGTCGACGTCGACCGGCTTGTTCAGGGAGGTCATGGAGGCCAAGAAAGCTATGCCTCCTGATAAGCTCGCAGAGCTCTGGGCCCTTGATCCCAAGCGTGCCAAAAGGATACTGGCAAATCGGCAGTCTGCTGCTCGCTCAAAAGAAAGGAAGTCCCGCTATATACAAGAACTTGAGCGCAAAGTTAAGACCCTTCAAACAGAAGCCACGACTCTTTCTGCTCAACTTACATTATTCCAGAGGGACACCACAGGTCTGAGTACTGAAAACACAGAACTTAAACTTCGGTTACAATCTATGGAGCAACAAGCTCAGTCGCGCGACGCATTAAACGAAGCTCTAAAGAAGGAGGTTGAGAGGCTCAAGATTGCCACAGGGGAGATGATGAGCCCTTCTGATTCATTCAACTTGGGAATGCACCAGATGCCATACAACCATCCATCAGCTTATTTTCCACTTCAACAACAACCAGGACCGGCAAGTCACCAGACCATGCAGCTGCGACAATTCAATCATTCCCAGTCTAGTATGCCTACCCAACATCTGCATCAGTCAAATTCTCATACTCGTCTTTCAGATATGTTGCAGAACGGCCCTGTCAGTCAGTTACAGGGACTCGACATTGGTAGTAAAGGAGCACCAGTCGTGAATTCTGAAGGCCCCTCGCTTTCTGCTAGTGAAAAAAGTTCCCCCTTTTGA

Protein Analysis

439

Amino Acids

46.97

Weight (kDa)

6.21

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica Prupe.6G041400_v2.0.a1
pyrus_communis pycom03g04130 pycom11g04360
rosa_chinensis RchiOBHm_Chr5g0073151
rosa_laevigata RLG00000036369
rosa_multiflora Rmu_sc0021999.1_g000001
rosa_roxburghii Rroxscaffold_1G00008030
rosa_rugosa Rorug05G0421500
rosa_samantha Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana Rw5G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1098
AatII GACGTC 1 cut(s) 629
AccI GTMKAC 3 cut(s) 389, 623, 629
AccII CGCG 4 cut(s) 257, 359, 937, 939
AclWI GGATC 8 cut(s) 5, 354, 362, 375, 391, 421, 489, 701
AcsI RAATTY 2 cut(s) 1174, 1267
AcuI CTGAAG 1 cut(s) 1293
AcyI GRCGYC 1 cut(s) 626
AdeI CACNNNGTG 1 cut(s) 289
AfaI GTAC 2 cut(s) 440, 880
AfiI CCNNNNNNNGG 5 cut(s) 301, 313, 377, 515, 594
AgeI ACCGGT 1 cut(s) 594
AgsI TTSAA 7 cut(s) 58, 177, 376, 815, 1024, 1079, 1129
AhdI GACNNNNNGTC 1 cut(s) 396
AjiI CACGTC 2 cut(s) 165, 192
AjnI CCWGG 2 cut(s) 447, 1087
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
Alw21I GWGCWC 2 cut(s) 696, 1258
AlwI GGATC 8 cut(s) 5, 354, 362, 375, 391, 421, 489, 701
AoxI GGCC 8 cut(s) 303, 506, 530, 581, 657, 699, 1210, 1276
ApaI GGGCCC 2 cut(s) 534, 703
ApeKI GCWGC 6 cut(s) 152, 328, 603, 749, 1114, 1117
ApoI RAATTY 2 cut(s) 1174, 1267
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
AsiGI ACCGGT 1 cut(s) 594
AspLEI GCGC 2 cut(s) 798, 939
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 5 cut(s) 43, 178, 328, 566, 1094
AvaII GGWCC 4 cut(s) 264, 424, 465, 1091
BaeGI GKGCMC 2 cut(s) 534, 703
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 4 cut(s) 534, 696, 703, 1010
BbsI GAAGAC 2 cut(s) 165, 258
Bbv12I GWGCWC 2 cut(s) 696, 1258
BbvI GCAGC 6 cut(s) 164, 315, 615, 736, 1104, 1126
BccI CCATC 7 cut(s) 337, 403, 497, 506, 608, 1062, 1066
BceAI ACGGC 5 cut(s) 142, 301, 408, 568, 1225
BciT130I CCWGG 2 cut(s) 449, 1089
BciVI GTATCC 1 cut(s) 720
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 4 cut(s) 108, 401, 1143, 1293
BfuI GTATCC 1 cut(s) 720
BglI GCCNNNNNGGC 1 cut(s) 362
BlpI GCTNAGC 1 cut(s) 203
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 3 cut(s) 248, 449, 1089
Bme18I GGWCC 4 cut(s) 264, 424, 465, 1091
BmeRI GACNNNNNGTC 1 cut(s) 396
BmgBI CACGTC 2 cut(s) 165, 192
BmiI GGNNCC 7 cut(s) 265, 266, 369, 466, 532, 701, 1279
BmrFI CCNGG 3 cut(s) 248, 449, 1089
BmrI ACTGGG 1 cut(s) 1132
BmsI GCATC 2 cut(s) 1032, 1174
BmuI ACTGGG 1 cut(s) 1132
BpiI GAAGAC 2 cut(s) 165, 258
Bpu1102I GCTNAGC 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 812, 965
BpuMI CCSGG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 626
BsaJI CCNNGG 3 cut(s) 312, 357, 477
BsaWI WCCGGW 1 cut(s) 594
BsaXI ACNNNNNCTCC 6 cut(s) 413, 416, 443, 446, 1245, 1275
Bsc4I CCNNNNNNNGG 5 cut(s) 301, 313, 377, 515, 594
Bse118I RCCGGY 4 cut(s) 545, 594, 632, 1093
Bse1I ACTGG 3 cut(s) 735, 1138, 1259
Bse3DI GCAATG 3 cut(s) 136, 505, 547
BseBI CCWGG 2 cut(s) 449, 1089
BseDI CCNNGG 3 cut(s) 312, 357, 477
BseGI GGATG 1 cut(s) 1054
BseLI CCNNNNNNNGG 5 cut(s) 301, 313, 377, 515, 594
BseMI GCAATG 3 cut(s) 136, 505, 547
BseMII CTCAG 3 cut(s) 194, 866, 944
BseNI ACTGG 3 cut(s) 735, 1138, 1259
BseRI GAGGAG 6 cut(s) 419, 434, 576, 579, 582, 585
BseSI GKGCMC 2 cut(s) 534, 703
BseXI GCAGC 6 cut(s) 164, 315, 615, 736, 1104, 1126
BseYI CCCAGC 1 cut(s) 220
Bsh1236I CGCG 4 cut(s) 257, 359, 937, 939
Bsh1285I CGRYCG 1 cut(s) 633
BshFI GGCC 8 cut(s) 305, 508, 532, 583, 659, 701, 1212, 1278
BshTI ACCGGT 1 cut(s) 594
BsiEI CGRYCG 1 cut(s) 633
BsiHKAI GWGCWC 2 cut(s) 696, 1258
BsiSI CCGG 6 cut(s) 247, 332, 546, 595, 633, 1094
BslFI GGGAC 4 cut(s) 250, 757, 875, 1245
BslI CCNNNNNNNGG 5 cut(s) 301, 313, 377, 515, 594
BsmFI GGGAC 4 cut(s) 250, 757, 875, 1245
BsmI GAATGC 1 cut(s) 1038
BsnI GGCC 8 cut(s) 305, 508, 532, 583, 659, 701, 1212, 1278
Bsp120I GGGCCC 2 cut(s) 530, 699
Bsp1286I GDGCHC 5 cut(s) 534, 696, 703, 1010, 1258
Bsp143I GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
Bsp1720I GCTNAGC 1 cut(s) 203
BspANI GGCC 8 cut(s) 305, 508, 532, 583, 659, 701, 1212, 1278
BspCNI CTCAG 3 cut(s) 195, 867, 943
BspFNI CGCG 4 cut(s) 257, 359, 937, 939
BspLI GGNNCC 7 cut(s) 265, 266, 369, 466, 532, 701, 1279
BspPI GGATC 8 cut(s) 5, 354, 362, 375, 391, 421, 489, 701
BsrDI GCAATG 3 cut(s) 136, 505, 547
BsrFI RCCGGY 4 cut(s) 545, 594, 632, 1093
BsrI ACTGG 3 cut(s) 735, 1138, 1259
BssAI RCCGGY 4 cut(s) 545, 594, 632, 1093
BssECI CCNNGG 3 cut(s) 312, 357, 477
BssMI GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
BssNI GRCGYC 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 449, 1089
Bst6I CTCTTC 1 cut(s) 572
BstACI GRCGYC 1 cut(s) 626
BstAPI GCANNNNNTGC 1 cut(s) 1042
BstBAI YACGTR 1 cut(s) 438
BstC8I GCNNGC 4 cut(s) 354, 687, 717, 754
BstDEI CTNAG 3 cut(s) 203, 875, 930
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 1054
BstFNI CGCG 4 cut(s) 257, 359, 937, 939
BstHHI GCGC 2 cut(s) 798, 939
BstKTI GATC 7 cut(s) 13, 349, 370, 386, 416, 484, 709
BstMBI GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
BstMCI CGRYCG 1 cut(s) 633
BstMWI GCNNNNNNNGC 6 cut(s) 126, 158, 362, 665, 691, 1042
BstNI CCWGG 2 cut(s) 449, 1089
BstSCI CCNGG 3 cut(s) 246, 447, 1087
BstSLI GKGCMC 2 cut(s) 534, 703
BstUI CGCG 4 cut(s) 257, 359, 937, 939
BstV1I GCAGC 6 cut(s) 164, 315, 615, 736, 1104, 1126
BstV2I GAAGAC 2 cut(s) 165, 258
BstX2I RGATCY 3 cut(s) 10, 346, 367
BstYI RGATCY 3 cut(s) 10, 346, 367
BsuI GTATCC 1 cut(s) 720
BsuRI GGCC 8 cut(s) 305, 508, 532, 583, 659, 701, 1212, 1278
BtgI CCRYGG 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 183
BtrI CACGTC 2 cut(s) 165, 192
BtsCI GGATG 1 cut(s) 1054
Cac8I GCNNGC 4 cut(s) 354, 687, 717, 754
CfoI GCGC 2 cut(s) 798, 939
Cfr10I RCCGGY 4 cut(s) 545, 594, 632, 1093
Cfr42I CCGCGG 1 cut(s) 360
CseI GACGC 2 cut(s) 263, 950
Csp6I GTAC 2 cut(s) 439, 879
CspAI ACCGGT 1 cut(s) 594
CspCI CAANNNNNGTGG 6 cut(s) 424, 442, 459, 477, 529, 564
CviAII CATG 3 cut(s) 340, 652, 1111
CviQI GTAC 2 cut(s) 439, 879
DdeI CTNAG 3 cut(s) 203, 875, 930
DpnI GATC 7 cut(s) 12, 348, 369, 385, 415, 483, 708
DpnII GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
DraIII CACNNNGTG 1 cut(s) 289
DrdI GACNNNNNNGTC 1 cut(s) 1098
DriI GACNNNNNGTC 1 cut(s) 396
DseDI GACNNNNNNGTC 1 cut(s) 1098
Eam1104I CTCTTC 1 cut(s) 572
Eam1105I GACNNNNNGTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 572
EciI GGCGGA 2 cut(s) 220, 380
Ecl136II GAGCTC 1 cut(s) 694
Eco24I GRGCYC 4 cut(s) 534, 696, 703, 1010
Eco47I GGWCC 4 cut(s) 264, 424, 465, 1091
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 1293
EcoICRI GAGCTC 1 cut(s) 694
EcoO109I RGGNCCY 4 cut(s) 264, 424, 700, 1277
EcoRI GAATTC 1 cut(s) 1267
EcoRII CCWGG 2 cut(s) 447, 1087
EcoT38I GRGCYC 4 cut(s) 534, 696, 703, 1010
FaeI CATG 3 cut(s) 343, 655, 1114
FaqI GGGAC 4 cut(s) 250, 757, 875, 1245
FatI CATG 3 cut(s) 339, 651, 1110
FauI CCCGC 3 cut(s) 105, 361, 782
FblI GTMKAC 3 cut(s) 389, 623, 629
FokI GGATG 1 cut(s) 1041
FriOI GRGCYC 4 cut(s) 534, 696, 703, 1010
FspBI CTAG 4 cut(s) 108, 401, 1143, 1293
GlaI GCGC 2 cut(s) 797, 938
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 8 cut(s) 305, 508, 532, 583, 659, 701, 1212, 1278
HapII CCGG 6 cut(s) 247, 332, 546, 595, 633, 1094
HgaI GACGC 2 cut(s) 263, 950
HhaI GCGC 2 cut(s) 798, 939
Hin1I GRCGYC 1 cut(s) 626
Hin1II CATG 3 cut(s) 343, 655, 1114
Hin6I GCGC 2 cut(s) 796, 937
HinP1I GCGC 2 cut(s) 796, 937
HincII GTYRAC 3 cut(s) 390, 624, 630
HindII GTYRAC 3 cut(s) 390, 624, 630
HinfI GANTC 4 cut(s) 397, 829, 1016, 1233
HpaII CCGG 6 cut(s) 247, 332, 546, 595, 633, 1094
HphI GGTGA 5 cut(s) 43, 178, 328, 566, 1094
Hpy166II GTNNAC 5 cut(s) 186, 195, 390, 624, 630
Hpy188I TCNGA 8 cut(s) 313, 418, 481, 486, 876, 1015, 1195, 1273
Hpy188III TCNNGA 8 cut(s) 41, 144, 401, 588, 677, 856, 982, 1264
Hpy8I GTNNAC 5 cut(s) 186, 195, 390, 624, 630
Hpy99I CGWCG 6 cut(s) 391, 394, 625, 628, 631, 944
HpyAV CCTTC 7 cut(s) 64, 295, 551, 821, 958, 1020, 1268
HpyCH4IV ACGT 4 cut(s) 164, 191, 437, 626
HpyCH4V TGCA 4 cut(s) 1036, 1114, 1165, 1204
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 158, 362, 665, 691, 1042
HpyF3I CTNAG 3 cut(s) 203, 875, 930
HpySE526I ACGT 4 cut(s) 164, 191, 437, 626
Hsp92I GRCGYC 1 cut(s) 626
Hsp92II CATG 3 cut(s) 343, 655, 1114
HspAI GCGC 2 cut(s) 796, 937
KflI GGGWCCC 1 cut(s) 264
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
LmnI GCTCC 2 cut(s) 919, 1253
Lsp1109I GCAGC 6 cut(s) 164, 315, 615, 736, 1104, 1126
LweI GCATC 2 cut(s) 1032, 1174
MaeI CTAG 4 cut(s) 108, 401, 1143, 1293
MaeII ACGT 4 cut(s) 164, 191, 437, 626
MaeIII GTNAC 3 cut(s) 906, 1100, 1224
MalI GATC 7 cut(s) 12, 348, 369, 385, 415, 483, 708
MboI GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
MboII GAAGA 4 cut(s) 40, 165, 263, 589
MflI RGATCY 3 cut(s) 10, 346, 367
MhlI GDGCHC 5 cut(s) 534, 696, 703, 1010, 1258
MluCI AATT 6 cut(s) 58, 226, 472, 1124, 1174, 1267
MlyI GAGTC 3 cut(s) 406, 823, 1227
MmeI TCCRAC 2 cut(s) 46, 54
MseI TTAA 3 cut(s) 804, 897, 947
MspA1I CMGCKG 2 cut(s) 359, 1117
MspI CCGG 6 cut(s) 247, 332, 546, 595, 633, 1094
MspR9I CCNGG 3 cut(s) 248, 449, 1089
Mva1269I GAATGC 1 cut(s) 1038
MvaI CCWGG 2 cut(s) 449, 1089
MvnI CGCG 4 cut(s) 257, 359, 937, 939
MwoI GCNNNNNNNGC 6 cut(s) 126, 158, 362, 665, 691, 1042
NciI CCSGG 1 cut(s) 248
NdeII GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
NlaIII CATG 3 cut(s) 343, 655, 1114
NlaIV GGNNCC 7 cut(s) 265, 266, 369, 466, 532, 701, 1279
NmuCI GTSAC 1 cut(s) 1100
PcsI WCGNNNNNNNCGW 4 cut(s) 188, 392, 626, 948
PctI GAATGC 1 cut(s) 1038
PfeI GAWTC 1 cut(s) 1016
PfoI TCCNGGA 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 594
PleI GAGTC 3 cut(s) 405, 823, 1227
PpsI GAGTC 3 cut(s) 405, 823, 1227
Ppu21I YACGTR 1 cut(s) 438
PpuMI RGGWCCY 2 cut(s) 264, 424
Psp124BI GAGCTC 1 cut(s) 696
Psp5II RGGWCCY 2 cut(s) 264, 424
Psp6I CCWGG 2 cut(s) 447, 1087
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 447, 1087
PspN4I GGNNCC 7 cut(s) 265, 266, 369, 466, 532, 701, 1279
PspOMI GGGCCC 2 cut(s) 530, 699
PspPPI RGGWCCY 2 cut(s) 264, 424
PsuI RGATCY 3 cut(s) 10, 346, 367
PvuII CAGCTG 1 cut(s) 1117
RsaI GTAC 2 cut(s) 440, 880
RsaNI GTAC 2 cut(s) 439, 879
SacI GAGCTC 1 cut(s) 696
SacII CCGCGG 1 cut(s) 360
SalI GTCGAC 3 cut(s) 388, 622, 628
SaqAI TTAA 3 cut(s) 804, 897, 947
Sau3AI GATC 7 cut(s) 10, 346, 367, 383, 413, 481, 706
ScaI AGTACT 1 cut(s) 880
SchI GAGTC 3 cut(s) 406, 823, 1227
ScrFI CCNGG 3 cut(s) 248, 449, 1089
SduI GDGCHC 5 cut(s) 534, 696, 703, 1010, 1258
SfaNI GCATC 2 cut(s) 1032, 1174
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SgrDI CGTCGACG 2 cut(s) 388, 622
SinI GGWCC 4 cut(s) 264, 424, 465, 1091
SmlI CTYRAG 2 cut(s) 791, 980
SmoI CTYRAG 2 cut(s) 791, 980
Sse9I AATT 6 cut(s) 58, 226, 472, 1124, 1174, 1267
SspMI CTAG 4 cut(s) 108, 401, 1143, 1293
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 3 cut(s) 246, 447, 1087
TaiI ACGT 4 cut(s) 167, 194, 440, 629
TaqI TCGA 4 cut(s) 389, 623, 629, 1236
TasI AATT 6 cut(s) 58, 226, 472, 1124, 1174, 1267
TatI WGTACW 1 cut(s) 878
TauI GCSGC 7 cut(s) 103, 158, 161, 359, 362, 365, 498
TfiI GAWTC 1 cut(s) 1016
Tru1I TTAA 3 cut(s) 804, 897, 947
Tru9I TTAA 3 cut(s) 804, 897, 947
TseFI GTSAC 1 cut(s) 1100
TseI GCWGC 6 cut(s) 152, 328, 603, 749, 1114, 1117
Tsp45I GTSAC 1 cut(s) 1100
TspDTI ATGAA 2 cut(s) 17, 1008
TspGWI ACGGA 2 cut(s) 360, 393
VpaK11BI GGWCC 4 cut(s) 264, 424, 465, 1091
XapI RAATTY 2 cut(s) 1174, 1267
XbaI TCTAGA 1 cut(s) 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 727
XmiI GTMKAC 3 cut(s) 389, 623, 629
XspI CTAG 4 cut(s) 108, 401, 1143, 1293
ZraI GACGTC 1 cut(s) 627
ZrmI AGTACT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.