Rh5DG511300
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013648
Physical Location & Seq
Reverse (-)
79829730 .. 79832610
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG511300.1

Sequence Viewer

Length: 1026 bp
ATGTCCACACTTCCACAACAACCACCAAACCCAATGCAGCAACATCCACTCCCCAATCCCAATCCCAACCCTAACCCTAATTCCCTTCTTCTTCCCAGAACCATTGGCAATGCCAACACCCGCGACGCTGCCAATGCTGCTGCTTCTCCTGATGCGAATGTGAATGTGAATGCCATCTCCTCCTCCGAGAATCGCGCCGCTCCATTCACCACCAGCGCTGCCACGTCATCCTCCTCCTCCACCTCCACTACAACAATGCTGGGCAGCACCACTTCCCCCATTCCCAACAACAACCACCCTTTCATCAGGTCCAGCTCCGCTGCCACCGGTGGGACCCACCACCACCACAGCAGCGGCAGCGGCAGCACGAGCATAAACCACAGGAGGGCCCACTCGGAGGTCAGCTTTCGGCTGCCGGAGGACCTCATGGATCTCTCCGGCCCCGATCCATTCAACGGCGCCGGATCCTCCACCGACGACTTGGGATCCGAGGAGGATCTCTTCTCCACCTACATCGACCTCGACAAGCTCCAGGCCGGCGCCGCTGACGACAATGGGCCCAATGAGAACAACGGCGGCGGCGTCGGAGAGAAGCGGCCGTCGCGGCACAGGCACAGTAGCTCGGTGGATGCGTCGTCCACGTCGACGGGTGTGTTCGGAGAGGTCATGGAGGCCAAGAAGGCAATGCCGCCTGATAAGCTCGCCGAGCTTTGGAATCTGGATCCAAAGCGCGCCAAAAGGATATTAGCAAATCGGCAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCCCGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAAACAGAAGCAACCACTCTTTCTGCCCAACTCACATTATTCCAGAGGGACACAACAGGTCTGAGCACTGAAAACACAGAGCTTAAGCTTCGGTTACAAGCTATGGAACAACAAGCTCAGTTGCGAGATTGTAAGCAACATACGACTTGTATCATATATGAAACTTTTCAGAAATATTTCATTCTTTATTATCTCTAA

Protein Analysis

341

Amino Acids

36.96

Weight (kDa)

6.6

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 240 - 290 2.6e-06 Basic region leucine zipper
bZIP_1 PF00170 243 - 291 2.5e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica Prupe.6G041400_v2.0.a1
pyrus_communis pycom03g04130 pycom11g04360
rosa_chinensis RchiOBHm_Chr5g0073151
rosa_laevigata RLG00000036369
rosa_multiflora Rmu_sc0021999.1_g000001
rosa_roxburghii Rroxscaffold_1G00008030
rosa_rugosa Rorug05G0421500
rosa_samantha Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana Rw5G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 458, 539
AccBSI CCGCTC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 644
AccII CGCG 4 cut(s) 123, 195, 604, 732
AclWI GGATC 9 cut(s) 438, 440, 459, 472, 480, 493, 504, 716, 729
AcoI YGGCCR 1 cut(s) 596
AcyI GRCGYC 3 cut(s) 459, 540, 582
AfeI AGCGCT 1 cut(s) 217
AfiI CCNNNNNNNGG 5 cut(s) 330, 385, 397, 455, 711
AflII CTTAAG 1 cut(s) 911
AgeI ACCGGT 1 cut(s) 326
AgsI TTSAA 2 cut(s) 454, 830
AjiI CACGTC 2 cut(s) 225, 642
AjnI CCWGG 1 cut(s) 531
Alw21I GWGCWC 1 cut(s) 896
AlwI GGATC 9 cut(s) 438, 440, 459, 472, 480, 493, 504, 716, 729
Aor51HI AGCGCT 1 cut(s) 217
AoxI GGCC 7 cut(s) 387, 439, 534, 557, 596, 672, 786
ApaI GGGCCC 2 cut(s) 391, 561
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
AsiGI ACCGGT 1 cut(s) 326
Asp700I GAANNNNTTC 2 cut(s) 993, 1004
AspLEI GCGC 7 cut(s) 197, 218, 461, 542, 732, 734, 813
AspS9I GGNCC 9 cut(s) 309, 333, 387, 388, 421, 440, 557, 558, 787
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 3 cut(s) 309, 333, 421
BaeGI GKGCMC 2 cut(s) 391, 561
BamHI GGATCC 3 cut(s) 464, 485, 721
BanI GGYRCC 2 cut(s) 458, 539
BanII GRGCYC 2 cut(s) 391, 561
BauI CACGAG 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 896
BccI CCATC 1 cut(s) 182
BceAI ACGGC 3 cut(s) 472, 583, 589
BciT130I CCWGG 1 cut(s) 533
BfoI RGCGCY 3 cut(s) 219, 462, 543
BfrI CTTAAG 1 cut(s) 911
BglI GCCNNNNNGGC 2 cut(s) 604, 680
Bme1390I CCNGG 1 cut(s) 533
Bme18I GGWCC 3 cut(s) 309, 333, 421
BmgBI CACGTC 2 cut(s) 225, 642
BmgT120I GGNCC 9 cut(s) 309, 333, 387, 388, 421, 440, 557, 558, 787
BmrFI CCNGG 1 cut(s) 533
BmsI GCATC 2 cut(s) 142, 619
BpmI CTGGAG 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 827
BsaHI GRCGYC 3 cut(s) 459, 540, 582
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 326
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 5 cut(s) 330, 385, 397, 455, 711
Bse118I RCCGGY 2 cut(s) 326, 536
Bse3DI GCAATG 2 cut(s) 115, 690
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 3 cut(s) 43, 227, 634
BseLI CCNNNNNNNGG 5 cut(s) 330, 385, 397, 455, 711
BseMI GCAATG 2 cut(s) 115, 690
BseMII CTCAG 2 cut(s) 881, 959
BsePI GCGCGC 1 cut(s) 730
BseRI GAGGAG 5 cut(s) 169, 172, 223, 226, 506
BseSI GKGCMC 2 cut(s) 391, 561
BseX3I CGGCCG 1 cut(s) 596
BseYI CCCAGC 1 cut(s) 259
Bsh1236I CGCG 4 cut(s) 123, 195, 604, 732
Bsh1285I CGRYCG 1 cut(s) 599
BshFI GGCC 7 cut(s) 389, 441, 536, 559, 598, 674, 788
BshNI GGYRCC 2 cut(s) 458, 539
BshTI ACCGGT 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 896
BsiSI CCGG 5 cut(s) 327, 416, 438, 462, 537
BslFI GGGAC 2 cut(s) 346, 890
BslI CCNNNNNNNGG 5 cut(s) 330, 385, 397, 455, 711
BsmFI GGGAC 2 cut(s) 346, 890
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 7 cut(s) 389, 441, 536, 559, 598, 674, 788
Bsp120I GGGCCC 2 cut(s) 387, 557
Bsp1286I GDGCHC 3 cut(s) 391, 561, 896
Bsp143I GATC 6 cut(s) 430, 445, 464, 485, 496, 721
BspANI GGCC 7 cut(s) 389, 441, 536, 559, 598, 674, 788
BspCNI CTCAG 2 cut(s) 882, 958
BspFNI CGCG 4 cut(s) 123, 195, 604, 732
BspPI GGATC 9 cut(s) 438, 440, 459, 472, 480, 493, 504, 716, 729
BspT107I GGYRCC 2 cut(s) 458, 539
BspTI CTTAAG 1 cut(s) 911
BsrBI CCGCTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 115, 690
BsrFI RCCGGY 2 cut(s) 326, 536
BssAI RCCGGY 2 cut(s) 326, 536
BssECI CCNNGG 1 cut(s) 489
BssHII GCGCGC 1 cut(s) 730
BssMI GATC 6 cut(s) 430, 445, 464, 485, 496, 721
BssNI GRCGYC 3 cut(s) 459, 540, 582
BssSI CACGAG 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 1 cut(s) 617
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 3 cut(s) 459, 540, 582
BstAFI CTTAAG 1 cut(s) 911
BstC8I GCNNGC 5 cut(s) 538, 702, 732, 769, 790
BstDEI CTNAG 2 cut(s) 890, 945
BstF5I GGATG 3 cut(s) 43, 227, 634
BstFNI CGCG 4 cut(s) 123, 195, 604, 732
BstH2I RGCGCY 3 cut(s) 219, 462, 543
BstHHI GCGC 7 cut(s) 197, 218, 461, 542, 732, 734, 813
BstKTI GATC 6 cut(s) 433, 448, 467, 488, 499, 724
BstMBI GATC 6 cut(s) 430, 445, 464, 485, 496, 721
BstMCI CGRYCG 1 cut(s) 599
BstNI CCWGG 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 531
BstSLI GKGCMC 2 cut(s) 391, 561
BstUI CGCG 4 cut(s) 123, 195, 604, 732
BstX2I RGATCY 5 cut(s) 430, 464, 485, 496, 721
BstYI RGATCY 5 cut(s) 430, 464, 485, 496, 721
BstZI CGGCCG 1 cut(s) 596
BsuRI GGCC 7 cut(s) 389, 441, 536, 559, 598, 674, 788
BtrI CACGTC 2 cut(s) 225, 642
BtsCI GGATG 3 cut(s) 43, 227, 634
BtsIMutI CAGTG 1 cut(s) 894
Cac8I GCNNGC 5 cut(s) 538, 702, 732, 769, 790
CfoI GCGC 7 cut(s) 197, 218, 461, 542, 732, 734, 813
Cfr10I RCCGGY 2 cut(s) 326, 536
Cfr13I GGNCC 9 cut(s) 309, 333, 387, 388, 421, 440, 557, 558, 787
CseI GACGC 3 cut(s) 134, 571, 621
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 2 cut(s) 427, 667
DdeI CTNAG 2 cut(s) 890, 945
DinI GGCGCC 2 cut(s) 460, 541
DpnI GATC 6 cut(s) 432, 447, 466, 487, 498, 723
DpnII GATC 6 cut(s) 430, 445, 464, 485, 496, 721
EaeI YGGCCR 1 cut(s) 596
EagI CGGCCG 1 cut(s) 596
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
EclXI CGGCCG 1 cut(s) 596
Eco24I GRGCYC 2 cut(s) 391, 561
Eco47I GGWCC 3 cut(s) 309, 333, 421
Eco47III AGCGCT 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 596
EcoO109I RGGNCCY 3 cut(s) 333, 387, 421
EcoRII CCWGG 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 391, 561
EgeI GGCGCC 2 cut(s) 460, 541
EheI GGCGCC 2 cut(s) 460, 541
FaeI CATG 2 cut(s) 430, 670
FaqI GGGAC 2 cut(s) 346, 890
FatI CATG 2 cut(s) 426, 666
FauI CCCGC 2 cut(s) 128, 797
FblI GTMKAC 1 cut(s) 644
FokI GGATG 3 cut(s) 30, 214, 641
FriOI GRGCYC 2 cut(s) 391, 561
GlaI GCGC 7 cut(s) 196, 217, 460, 541, 731, 733, 812
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 515
HaeII RGCGCY 3 cut(s) 219, 462, 543
HaeIII GGCC 7 cut(s) 389, 441, 536, 559, 598, 674, 788
HapII CCGG 5 cut(s) 327, 416, 438, 462, 537
HgaI GACGC 3 cut(s) 134, 571, 621
HhaI GCGC 7 cut(s) 197, 218, 461, 542, 732, 734, 813
Hin1I GRCGYC 3 cut(s) 459, 540, 582
Hin1II CATG 2 cut(s) 430, 670
Hin6I GCGC 7 cut(s) 195, 216, 459, 540, 730, 732, 811
HinP1I GCGC 7 cut(s) 195, 216, 459, 540, 730, 732, 811
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 2 cut(s) 190, 715
HpaII CCGG 5 cut(s) 327, 416, 438, 462, 537
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 6, 639, 645
Hpy188I TCNGA 8 cut(s) 187, 397, 490, 587, 659, 822, 891, 999
Hpy188III TCNNGA 3 cut(s) 149, 719, 871
Hpy8I GTNNAC 3 cut(s) 6, 639, 645
Hpy99I CGWCG 7 cut(s) 128, 479, 587, 604, 637, 646, 649
HpyAV CCTTC 4 cut(s) 95, 673, 778, 836
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4IV ACGT 2 cut(s) 224, 641
HpyCH4V TGCA 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 890, 945
HpySE526I ACGT 2 cut(s) 224, 641
Hsp92I GRCGYC 3 cut(s) 459, 540, 582
Hsp92II CATG 2 cut(s) 430, 670
HspAI GCGC 7 cut(s) 195, 216, 459, 540, 730, 732, 811
KasI GGCGCC 2 cut(s) 458, 539
KflI GGGWCCC 1 cut(s) 333
KroI GCCGGC 1 cut(s) 536
KroNI GCCGGC 1 cut(s) 538
Kzo9I GATC 6 cut(s) 430, 445, 464, 485, 496, 721
LmnI GCTCC 3 cut(s) 205, 320, 534
LweI GCATC 2 cut(s) 142, 619
MaeII ACGT 2 cut(s) 224, 641
MaeIII GTNAC 1 cut(s) 921
MalI GATC 6 cut(s) 432, 447, 466, 487, 498, 723
MbiI CCGCTC 1 cut(s) 200
MboI GATC 6 cut(s) 430, 445, 464, 485, 496, 721
MboII GAAGA 3 cut(s) 80, 83, 493
MflI RGATCY 5 cut(s) 430, 464, 485, 496, 721
MhlI GDGCHC 3 cut(s) 391, 561, 896
MluCI AATT 1 cut(s) 79
Mly113I GGCGCC 2 cut(s) 459, 540
MmeI TCCRAC 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 536
MroXI GAANNNNTTC 2 cut(s) 993, 1004
MseI TTAA 1 cut(s) 912
MspA1I CMGCKG 4 cut(s) 320, 354, 360, 545
MspCI CTTAAG 1 cut(s) 911
MspI CCGG 5 cut(s) 327, 416, 438, 462, 537
MspR9I CCNGG 1 cut(s) 533
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 533
MvnI CGCG 4 cut(s) 123, 195, 604, 732
NaeI GCCGGC 1 cut(s) 538
NarI GGCGCC 2 cut(s) 459, 540
NdeII GATC 6 cut(s) 430, 445, 464, 485, 496, 721
NgoMIV GCCGGC 1 cut(s) 536
NlaIII CATG 2 cut(s) 430, 670
NmeAIII GCCGAG 1 cut(s) 730
PauI GCGCGC 1 cut(s) 730
PcsI WCGNNNNNNNCGW 3 cut(s) 579, 629, 641
PctI GAATGC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 538
PdmI GAANNNNTTC 2 cut(s) 993, 1004
PfeI GAWTC 2 cut(s) 190, 715
PinAI ACCGGT 1 cut(s) 326
PluTI GGCGCC 2 cut(s) 462, 543
PpuMI RGGWCCY 2 cut(s) 333, 421
Psp5II RGGWCCY 2 cut(s) 333, 421
Psp6I CCWGG 1 cut(s) 531
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 531
PspOMI GGGCCC 2 cut(s) 387, 557
PspPI GGNCC 9 cut(s) 309, 333, 387, 388, 421, 440, 557, 558, 787
PspPPI RGGWCCY 2 cut(s) 333, 421
PsuI RGATCY 5 cut(s) 430, 464, 485, 496, 721
PteI GCGCGC 1 cut(s) 730
SalI GTCGAC 1 cut(s) 643
SaqAI TTAA 1 cut(s) 912
Sau3AI GATC 6 cut(s) 430, 445, 464, 485, 496, 721
Sau96I GGNCC 9 cut(s) 309, 333, 387, 388, 421, 440, 557, 558, 787
ScrFI CCNGG 1 cut(s) 533
SduI GDGCHC 3 cut(s) 391, 561, 896
SfaNI GCATC 2 cut(s) 142, 619
SfoI GGCGCC 2 cut(s) 460, 541
SgrAI CRCCGGYG 1 cut(s) 326
SgrDI CGTCGACG 1 cut(s) 643
SinI GGWCC 3 cut(s) 309, 333, 421
SmlI CTYRAG 2 cut(s) 806, 911
SmoI CTYRAG 2 cut(s) 806, 911
Sse9I AATT 1 cut(s) 79
SspDI GGCGCC 2 cut(s) 458, 539
SspI AATATT 1 cut(s) 1004
StyD4I CCNGG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 617
TaiI ACGT 2 cut(s) 227, 644
TaqI TCGA 3 cut(s) 516, 522, 644
TasI AATT 1 cut(s) 79
TauI GCSGC 9 cut(s) 200, 357, 363, 545, 579, 582, 598, 607, 691
TfiI GAWTC 2 cut(s) 190, 715
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 1 cut(s) 901
TspDTI ATGAA 3 cut(s) 292, 997, 1002
TspRI CASTG 1 cut(s) 901
Vha464I CTTAAG 1 cut(s) 911
VpaK11BI GGWCC 3 cut(s) 309, 333, 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 644
XmnI GAANNNNTTC 2 cut(s) 993, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.