transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40470 FvH4_3g40470 FvH4_3g40470 |
| malus_domestica | MD03G1051900.v1.1 MD11G1054000.v1.1 |
| prunus_persica | Prupe.6G041400_v2.0.a1 |
| pyrus_communis | pycom03g04130 pycom11g04360 |
| rosa_chinensis | RchiOBHm_Chr5g0073151 |
| rosa_laevigata | RLG00000036369 |
| rosa_multiflora | Rmu_sc0021999.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00008030 |
| rosa_rugosa | Rorug05G0421500 |
| rosa_samantha | Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300 |
| rosa_wichuraiana | Rw5G044460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| Acc36I | ACCTGC | 1 cut(s) | 1213 |
| AccB1I | GGYRCC | 2 cut(s) | 536, 617 |
| AccBSI | CCGCTC | 1 cut(s) | 233 |
| AccI | GTMKAC | 1 cut(s) | 734 |
| AccII | CGCG | 4 cut(s) | 144, 228, 694, 822 |
| AclWI | GGATC | 8 cut(s) | 516, 518, 537, 550, 558, 571, 582, 806 |
| AcoI | YGGCCR | 1 cut(s) | 686 |
| AcuI | CTGAAG | 2 cut(s) | 1085, 1401 |
| AcyI | GRCGYC | 3 cut(s) | 537, 618, 672 |
| AfaI | GTAC | 1 cut(s) | 1414 |
| AfeI | AGCGCT | 1 cut(s) | 250 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 396, 463, 475, 533 |
| AflII | CTTAAG | 1 cut(s) | 1001 |
| AgeI | ACCGGT | 1 cut(s) | 392 |
| AgsI | TTSAA | 4 cut(s) | 532, 920, 1129, 1240 |
| AjiI | CACGTC | 2 cut(s) | 258, 732 |
| AjnI | CCWGG | 2 cut(s) | 609, 1198 |
| AluBI | AGCT | 8 cut(s) | 483, 607, 711, 790, 799, 1000, 1006, 1034 |
| AluI | AGCT | 8 cut(s) | 483, 607, 711, 790, 799, 1000, 1006, 1034 |
| Alw21I | GWGCWC | 1 cut(s) | 986 |
| Alw26I | GTCTC | 1 cut(s) | 672 |
| AlwI | GGATC | 8 cut(s) | 516, 518, 537, 550, 558, 571, 582, 806 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1205 |
| Aor51HI | AGCGCT | 1 cut(s) | 250 |
| ApaI | GGGCCC | 2 cut(s) | 469, 654 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 833, 865 |
| AsiGI | ACCGGT | 1 cut(s) | 392 |
| AspLEI | GCGC | 8 cut(s) | 230, 251, 383, 539, 620, 822, 824, 903 |
| AsuHPI | GGTGA | 2 cut(s) | 232, 1205 |
| AvaII | GGWCC | 4 cut(s) | 375, 399, 499, 1202 |
| BaeGI | GKGCMC | 2 cut(s) | 469, 654 |
| BamHI | GGATCC | 2 cut(s) | 542, 563 |
| BanI | GGYRCC | 2 cut(s) | 536, 617 |
| BanII | GRGCYC | 2 cut(s) | 469, 654 |
| BauI | CACGAG | 1 cut(s) | 445 |
| Bbv12I | GWGCWC | 1 cut(s) | 986 |
| BccI | CCATC | 3 cut(s) | 215, 1015, 1278 |
| BceAI | ACGGC | 4 cut(s) | 550, 673, 682, 1333 |
| BciT130I | CCWGG | 2 cut(s) | 611, 1200 |
| BcoDI | GTCTC | 1 cut(s) | 672 |
| BfaI | CTAG | 1 cut(s) | 1254 |
| BfoI | RGCGCY | 4 cut(s) | 252, 384, 540, 621 |
| BfrI | CTTAAG | 1 cut(s) | 1001 |
| BfuAI | ACCTGC | 1 cut(s) | 1213 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 694, 770 |
| Bme1390I | CCNGG | 2 cut(s) | 611, 1200 |
| Bme18I | GGWCC | 4 cut(s) | 375, 399, 499, 1202 |
| BmgBI | CACGTC | 2 cut(s) | 258, 732 |
| BmrFI | CCNGG | 2 cut(s) | 611, 1200 |
| BmrI | ACTGGG | 2 cut(s) | 1243, 1257 |
| BmsI | GCATC | 2 cut(s) | 169, 709 |
| BmuI | ACTGGG | 2 cut(s) | 1243, 1257 |
| BpmI | CTGGAG | 1 cut(s) | 593 |
| BpuEI | CTTGAG | 2 cut(s) | 917, 1070 |
| BsaHI | GRCGYC | 3 cut(s) | 537, 618, 672 |
| BsaJI | CCNNGG | 2 cut(s) | 567, 714 |
| BsaWI | WCCGGW | 1 cut(s) | 392 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 42, 72, 695, 725 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 396, 463, 475, 533 |
| Bse118I | RCCGGY | 2 cut(s) | 392, 614 |
| Bse1I | ACTGG | 2 cut(s) | 1249, 1263 |
| Bse3DI | GCAATG | 2 cut(s) | 136, 780 |
| BseBI | CCWGG | 2 cut(s) | 611, 1200 |
| BseDI | CCNNGG | 2 cut(s) | 567, 714 |
| BseGI | GGATG | 3 cut(s) | 52, 260, 724 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 396, 463, 475, 533 |
| BseMI | GCAATG | 2 cut(s) | 136, 780 |
| BseMII | CTCAG | 2 cut(s) | 971, 1049 |
| BseNI | ACTGG | 2 cut(s) | 1249, 1263 |
| BsePI | GCGCGC | 1 cut(s) | 820 |
| BseRI | GAGGAG | 8 cut(s) | 202, 205, 256, 259, 262, 277, 280, 584 |
| BseSI | GKGCMC | 2 cut(s) | 469, 654 |
| BseX3I | CGGCCG | 1 cut(s) | 686 |
| BseYI | CCCAGC | 1 cut(s) | 307 |
| Bsh1236I | CGCG | 4 cut(s) | 144, 228, 694, 822 |
| Bsh1285I | CGRYCG | 1 cut(s) | 689 |
| BshNI | GGYRCC | 2 cut(s) | 536, 617 |
| BshTI | ACCGGT | 1 cut(s) | 392 |
| BsiEI | CGRYCG | 1 cut(s) | 689 |
| BsiHKAI | GWGCWC | 1 cut(s) | 986 |
| BsiSI | CCGG | 5 cut(s) | 393, 494, 516, 540, 615 |
| BslFI | GGGAC | 2 cut(s) | 412, 980 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 396, 463, 475, 533 |
| BsmAI | GTCTC | 1 cut(s) | 672 |
| BsmFI | GGGAC | 2 cut(s) | 412, 980 |
| BsmI | GAATGC | 2 cut(s) | 208, 1143 |
| Bsp120I | GGGCCC | 2 cut(s) | 465, 650 |
| Bsp1286I | GDGCHC | 3 cut(s) | 469, 654, 986 |
| Bsp143I | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| BspCNI | CTCAG | 2 cut(s) | 972, 1048 |
| BspFNI | CGCG | 4 cut(s) | 144, 228, 694, 822 |
| BspMI | ACCTGC | 1 cut(s) | 1213 |
| BspPI | GGATC | 8 cut(s) | 516, 518, 537, 550, 558, 571, 582, 806 |
| BspT107I | GGYRCC | 2 cut(s) | 536, 617 |
| BspTI | CTTAAG | 1 cut(s) | 1001 |
| BsrBI | CCGCTC | 1 cut(s) | 233 |
| BsrDI | GCAATG | 2 cut(s) | 136, 780 |
| BsrFI | RCCGGY | 2 cut(s) | 392, 614 |
| BsrI | ACTGG | 2 cut(s) | 1249, 1263 |
| BssAI | RCCGGY | 2 cut(s) | 392, 614 |
| BssECI | CCNNGG | 2 cut(s) | 567, 714 |
| BssHII | GCGCGC | 1 cut(s) | 820 |
| BssMI | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| BssNI | GRCGYC | 3 cut(s) | 537, 618, 672 |
| BssSI | CACGAG | 1 cut(s) | 445 |
| Bst2BI | CACGAG | 1 cut(s) | 445 |
| Bst2UI | CCWGG | 2 cut(s) | 611, 1200 |
| Bst4CI | ACNGT | 1 cut(s) | 707 |
| Bst6I | CTCTTC | 2 cut(s) | 286, 584 |
| BstACI | GRCGYC | 3 cut(s) | 537, 618, 672 |
| BstAFI | CTTAAG | 1 cut(s) | 1001 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1147 |
| BstC8I | GCNNGC | 6 cut(s) | 142, 616, 792, 822, 859, 880 |
| BstDEI | CTNAG | 2 cut(s) | 980, 1035 |
| BstDSI | CCRYGG | 1 cut(s) | 714 |
| BstEII | GGTNACC | 1 cut(s) | 1211 |
| BstF5I | GGATG | 3 cut(s) | 52, 260, 724 |
| BstFNI | CGCG | 4 cut(s) | 144, 228, 694, 822 |
| BstH2I | RGCGCY | 4 cut(s) | 252, 384, 540, 621 |
| BstHHI | GCGC | 8 cut(s) | 230, 251, 383, 539, 620, 822, 824, 903 |
| BstKTI | GATC | 6 cut(s) | 511, 526, 545, 566, 577, 814 |
| BstMAI | GTCTC | 1 cut(s) | 672 |
| BstMBI | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| BstMCI | CGRYCG | 1 cut(s) | 689 |
| BstNI | CCWGG | 2 cut(s) | 611, 1200 |
| BstNSI | RCATGY | 1 cut(s) | 1225 |
| BstPI | GGTNACC | 1 cut(s) | 1211 |
| BstSCI | CCNGG | 2 cut(s) | 609, 1198 |
| BstSLI | GKGCMC | 2 cut(s) | 469, 654 |
| BstUI | CGCG | 4 cut(s) | 144, 228, 694, 822 |
| BstX2I | RGATCY | 4 cut(s) | 508, 542, 563, 574 |
| BstYI | RGATCY | 4 cut(s) | 508, 542, 563, 574 |
| BstZI | CGGCCG | 1 cut(s) | 686 |
| BtgI | CCRYGG | 1 cut(s) | 714 |
| BtgZI | GCGATG | 1 cut(s) | 1034 |
| BtrI | CACGTC | 2 cut(s) | 258, 732 |
| BtsCI | GGATG | 3 cut(s) | 52, 260, 724 |
| BtsIMutI | CAGTG | 2 cut(s) | 984, 1061 |
| BveI | ACCTGC | 1 cut(s) | 1213 |
| Cac8I | GCNNGC | 6 cut(s) | 142, 616, 792, 822, 859, 880 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1205 |
| CfoI | GCGC | 8 cut(s) | 230, 251, 383, 539, 620, 822, 824, 903 |
| Cfr10I | RCCGGY | 2 cut(s) | 392, 614 |
| CseI | GACGC | 3 cut(s) | 155, 661, 711 |
| Csp6I | GTAC | 1 cut(s) | 1413 |
| CspAI | ACCGGT | 1 cut(s) | 392 |
| CviAII | CATG | 3 cut(s) | 505, 757, 1222 |
| CviQI | GTAC | 1 cut(s) | 1413 |
| DdeI | CTNAG | 2 cut(s) | 980, 1035 |
| DinI | GGCGCC | 2 cut(s) | 538, 619 |
| DpnI | GATC | 6 cut(s) | 510, 525, 544, 565, 576, 813 |
| DpnII | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1209 |
| EaeI | YGGCCR | 1 cut(s) | 686 |
| EagI | CGGCCG | 1 cut(s) | 686 |
| Eam1104I | CTCTTC | 2 cut(s) | 286, 584 |
| EarI | CTCTTC | 2 cut(s) | 286, 584 |
| EciI | GGCGGA | 1 cut(s) | 453 |
| EclXI | CGGCCG | 1 cut(s) | 686 |
| Eco24I | GRGCYC | 2 cut(s) | 469, 654 |
| Eco47I | GGWCC | 4 cut(s) | 375, 399, 499, 1202 |
| Eco47III | AGCGCT | 1 cut(s) | 250 |
| Eco52I | CGGCCG | 1 cut(s) | 686 |
| Eco57I | CTGAAG | 2 cut(s) | 1085, 1401 |
| Eco91I | GGTNACC | 1 cut(s) | 1211 |
| EcoO109I | RGGNCCY | 6 cut(s) | 399, 465, 499, 650, 1202, 1385 |
| EcoO65I | GGTNACC | 1 cut(s) | 1211 |
| EcoRII | CCWGG | 2 cut(s) | 609, 1198 |
| EcoT38I | GRGCYC | 2 cut(s) | 469, 654 |
| EgeI | GGCGCC | 2 cut(s) | 538, 619 |
| EheI | GGCGCC | 2 cut(s) | 538, 619 |
| FaeI | CATG | 3 cut(s) | 508, 760, 1225 |
| FaqI | GGGAC | 2 cut(s) | 412, 980 |
| FatI | CATG | 3 cut(s) | 504, 756, 1221 |
| FauI | CCCGC | 2 cut(s) | 149, 887 |
| FblI | GTMKAC | 1 cut(s) | 734 |
| FokI | GGATG | 3 cut(s) | 39, 247, 731 |
| FriOI | GRGCYC | 2 cut(s) | 469, 654 |
| FspBI | CTAG | 1 cut(s) | 1254 |
| GlaI | GCGC | 8 cut(s) | 229, 250, 382, 538, 619, 821, 823, 902 |
| GsaI | CCCAGC | 1 cut(s) | 311 |
| GsuI | CTGGAG | 1 cut(s) | 593 |
| HaeII | RGCGCY | 4 cut(s) | 252, 384, 540, 621 |
| HapII | CCGG | 5 cut(s) | 393, 494, 516, 540, 615 |
| HgaI | GACGC | 3 cut(s) | 155, 661, 711 |
| HhaI | GCGC | 8 cut(s) | 230, 251, 383, 539, 620, 822, 824, 903 |
| Hin1I | GRCGYC | 3 cut(s) | 537, 618, 672 |
| Hin1II | CATG | 3 cut(s) | 508, 760, 1225 |
| Hin6I | GCGC | 8 cut(s) | 228, 249, 381, 537, 618, 820, 822, 901 |
| HinP1I | GCGC | 8 cut(s) | 228, 249, 381, 537, 618, 820, 822, 901 |
| HincII | GTYRAC | 1 cut(s) | 735 |
| HindII | GTYRAC | 1 cut(s) | 735 |
| HindIII | AAGCTT | 1 cut(s) | 1004 |
| HinfI | GANTC | 4 cut(s) | 223, 805, 1046, 1121 |
| HpaII | CCGG | 5 cut(s) | 393, 494, 516, 540, 615 |
| HphI | GGTGA | 2 cut(s) | 232, 1205 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 729, 735 |
| Hpy188III | TCNNGA | 3 cut(s) | 176, 809, 961 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 729, 735 |
| Hpy99I | CGWCG | 7 cut(s) | 149, 557, 677, 694, 727, 736, 739 |
| HpyAV | CCTTC | 8 cut(s) | 116, 286, 538, 763, 868, 926, 1063, 1376 |
| HpyCH4III | ACNGT | 1 cut(s) | 707 |
| HpyCH4IV | ACGT | 2 cut(s) | 257, 731 |
| HpyCH4V | TGCA | 4 cut(s) | 1141, 1225, 1312, 1400 |
| HpyF3I | CTNAG | 2 cut(s) | 980, 1035 |
| HpySE526I | ACGT | 2 cut(s) | 257, 731 |
| Hsp92I | GRCGYC | 3 cut(s) | 537, 618, 672 |
| Hsp92II | CATG | 3 cut(s) | 508, 760, 1225 |
| HspAI | GCGC | 8 cut(s) | 228, 249, 381, 537, 618, 820, 822, 901 |
| KasI | GGCGCC | 2 cut(s) | 536, 617 |
| KflI | GGGWCCC | 1 cut(s) | 399 |
| KroI | GCCGGC | 1 cut(s) | 614 |
| KroNI | GCCGGC | 1 cut(s) | 616 |
| Kzo9I | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| LmnI | GCTCC | 3 cut(s) | 238, 612, 716 |
| LweI | GCATC | 2 cut(s) | 169, 709 |
| MaeI | CTAG | 1 cut(s) | 1254 |
| MaeII | ACGT | 2 cut(s) | 257, 731 |
| MaeIII | GTNAC | 4 cut(s) | 1011, 1211, 1265, 1332 |
| MalI | GATC | 6 cut(s) | 510, 525, 544, 565, 576, 813 |
| MbiI | CCGCTC | 1 cut(s) | 233 |
| MboI | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| MboII | GAAGA | 9 cut(s) | 101, 104, 156, 159, 162, 273, 571, 1078, 1265 |
| MflI | RGATCY | 4 cut(s) | 508, 542, 563, 574 |
| MhlI | GDGCHC | 3 cut(s) | 469, 654, 986 |
| MluCI | AATT | 3 cut(s) | 64, 100, 1182 |
| Mly113I | GGCGCC | 2 cut(s) | 537, 618 |
| MmeI | TCCRAC | 1 cut(s) | 655 |
| MroNI | GCCGGC | 1 cut(s) | 614 |
| MseI | TTAA | 2 cut(s) | 1002, 1423 |
| MspA1I | CMGCKG | 3 cut(s) | 386, 429, 623 |
| MspCI | CTTAAG | 1 cut(s) | 1001 |
| MspI | CCGG | 5 cut(s) | 393, 494, 516, 540, 615 |
| MspR9I | CCNGG | 2 cut(s) | 611, 1200 |
| Mva1269I | GAATGC | 2 cut(s) | 208, 1143 |
| MvaI | CCWGG | 2 cut(s) | 611, 1200 |
| MvnI | CGCG | 4 cut(s) | 144, 228, 694, 822 |
| NaeI | GCCGGC | 1 cut(s) | 616 |
| NarI | GGCGCC | 2 cut(s) | 537, 618 |
| NdeII | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| NgoMIV | GCCGGC | 1 cut(s) | 614 |
| NlaIII | CATG | 3 cut(s) | 508, 760, 1225 |
| NmuCI | GTSAC | 1 cut(s) | 1211 |
| NspI | RCATGY | 1 cut(s) | 1225 |
| PauI | GCGCGC | 1 cut(s) | 820 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 731 |
| PctI | GAATGC | 2 cut(s) | 208, 1143 |
| PdiI | GCCGGC | 1 cut(s) | 616 |
| PfeI | GAWTC | 4 cut(s) | 223, 805, 1046, 1121 |
| PinAI | ACCGGT | 1 cut(s) | 392 |
| PluTI | GGCGCC | 2 cut(s) | 540, 621 |
| PpuMI | RGGWCCY | 3 cut(s) | 399, 499, 1202 |
| Psp5II | RGGWCCY | 3 cut(s) | 399, 499, 1202 |
| Psp6I | CCWGG | 2 cut(s) | 609, 1198 |
| PspEI | GGTNACC | 1 cut(s) | 1211 |
| PspFI | CCCAGC | 1 cut(s) | 307 |
| PspGI | CCWGG | 2 cut(s) | 609, 1198 |
| PspOMI | GGGCCC | 2 cut(s) | 465, 650 |
| PspPPI | RGGWCCY | 3 cut(s) | 399, 499, 1202 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1205 |
| PsuI | RGATCY | 4 cut(s) | 508, 542, 563, 574 |
| PteI | GCGCGC | 1 cut(s) | 820 |
| RsaI | GTAC | 1 cut(s) | 1414 |
| RsaNI | GTAC | 1 cut(s) | 1413 |
| SalI | GTCGAC | 1 cut(s) | 733 |
| SaqAI | TTAA | 2 cut(s) | 1002, 1423 |
| Sau3AI | GATC | 6 cut(s) | 508, 523, 542, 563, 574, 811 |
| ScrFI | CCNGG | 2 cut(s) | 611, 1200 |
| SduI | GDGCHC | 3 cut(s) | 469, 654, 986 |
| SfaNI | GCATC | 2 cut(s) | 169, 709 |
| SfoI | GGCGCC | 2 cut(s) | 538, 619 |
| SgrAI | CRCCGGYG | 1 cut(s) | 392 |
| SgrDI | CGTCGACG | 1 cut(s) | 733 |
| SinI | GGWCC | 4 cut(s) | 375, 399, 499, 1202 |
| SmlI | CTYRAG | 3 cut(s) | 896, 1001, 1085 |
| SmoI | CTYRAG | 3 cut(s) | 896, 1001, 1085 |
| Sse9I | AATT | 3 cut(s) | 64, 100, 1182 |
| SspDI | GGCGCC | 2 cut(s) | 536, 617 |
| SspMI | CTAG | 1 cut(s) | 1254 |
| StyD4I | CCNGG | 2 cut(s) | 609, 1198 |
| TaaI | ACNGT | 1 cut(s) | 707 |
| TaiI | ACGT | 2 cut(s) | 260, 734 |
| TaqI | TCGA | 3 cut(s) | 594, 600, 734 |
| TasI | AATT | 3 cut(s) | 64, 100, 1182 |
| TfiI | GAWTC | 4 cut(s) | 223, 805, 1046, 1121 |
| Tru1I | TTAA | 2 cut(s) | 1002, 1423 |
| Tru9I | TTAA | 2 cut(s) | 1002, 1423 |
| TscAI | CASTG | 2 cut(s) | 991, 1068 |
| TseFI | GTSAC | 1 cut(s) | 1211 |
| Tsp45I | GTSAC | 1 cut(s) | 1211 |
| TspDTI | ATGAA | 2 cut(s) | 358, 1265 |
| TspGWI | ACGGA | 1 cut(s) | 703 |
| TspRI | CASTG | 2 cut(s) | 991, 1068 |
| Vha464I | CTTAAG | 1 cut(s) | 1001 |
| VpaK11BI | GGWCC | 4 cut(s) | 375, 399, 499, 1202 |
| XceI | RCATGY | 1 cut(s) | 1225 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 556 |
| XmiI | GTMKAC | 1 cut(s) | 734 |
| XspI | CTAG | 1 cut(s) | 1254 |