RLG00000036369
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
79745075 .. 79747415
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036369

Sequence Viewer

Length: 1425 bp
ATGTCCACACTTCCACAACAAGAACCACAACCACCAAACCCAATGCCGCAACATCCACTCCCCAATTCCAATCCCAATCCCAATCCCAACCCTAACCCTAATTCCCTTCTTCTTCCCAGAACCATTGGCAATGCCAACGCCCGCGACGCTGCCAATGCTGCTTCTTCTTCTTCTCCTGATGCGAATGTGAATGTGAATGTGAATGCCATCTCCTCCTCCGAGAATCGCGCCGCTCCATTCACCACCAGCGCTGCCACGTCATCCTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCACTACAACAATGCTGGGCAGCACCACTTCCCCCATTCCCAACAACAACAGCAGCAACAACAACAACCACCCTTTCATTAGGTCCAGCGCCGCTGCCACCGGTGGGACCCACCACCACCACAGCAGCAGCAGCAGCGGCGGCGGCGGAGGCACGAGCATAAACCACAGGAGGGCCCACTCGGAGGTCAGCTTTCGGTTGCCGGAGGACCTCATGGATCTCTCCGGCCCCGATCCCTTCAACGGCGCCGGATCCTCCACCGACGACTTGGGATCCGAGGAGGATCTCTTCTCCACCTACATCGACCTCGACAAGCTCCAGGCCGGCGCCGCTGACGACAATGGGCCTGATAACAAGGGGCCCAATGAGAACAACGGCGGCGTCGGAGACAAGCGGCCGTCGCGGCACAGGCACAGTAGCTCCGTGGATGCGTCGTCCACGTCGACGGGTGTGTTCGGAGAGGTCATGGAGGCCAAGAAGGCAATGCCGCCTGATAAGCTGGCAGAGCTTTGGAATCTTGATCCAAAGCGCGCCAAAAGGATATTAGCAAATCGGCAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCCCGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAAACAGAAGCAACCACTCTTTCTGCCCAACTCACATTATTCCAGAGGGACACAACGGGTCTGAGCACTGAAAACACAGAGCTTAAGCTTCGGTTACAAGCGATGGAACAACAAGCTCAGTTGCGAGATTCTCTAAACGAAGCACTGAAGAAGGAGGTTGAGAGGCTCAAGGTTGCCACAGGGGAGATGATGAGCCATTCAGAATCATTCAACTTGGGAATGCACCAAATGCCATACAACAACAACCCGTCCGCTTATTTTCCAATTACACAACAACAACCAGGACCTGCTGGTCACCAGAACATGCAGTTGCCACCATTCAATCATTCCCAGTCTAGTATGCCCAGTAACCATCTTCATCAGCCAAACTCTCATACTCTTTCAGATATTATGCAGAACGGCCCTGTTGGTCAGTTACAGGGGCTTGACATCAGTAATAAAATGCCACATCTTGTGAAGTCTGAAGGCCCCTCGCTTTCTGCAAGTGAGAGTAGTACCACTTTTTAA

Protein Analysis

475

Amino Acids

50.75

Weight (kDa)

6.22

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 270 - 320 2.3e-06 Basic region leucine zipper
bZIP_1 PF00170 273 - 321 2.5e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013648)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1209
Acc36I ACCTGC 1 cut(s) 1213
AccB1I GGYRCC 2 cut(s) 536, 617
AccBSI CCGCTC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 734
AccII CGCG 4 cut(s) 144, 228, 694, 822
AclWI GGATC 8 cut(s) 516, 518, 537, 550, 558, 571, 582, 806
AcoI YGGCCR 1 cut(s) 686
AcuI CTGAAG 2 cut(s) 1085, 1401
AcyI GRCGYC 3 cut(s) 537, 618, 672
AfaI GTAC 1 cut(s) 1414
AfeI AGCGCT 1 cut(s) 250
AfiI CCNNNNNNNGG 4 cut(s) 396, 463, 475, 533
AflII CTTAAG 1 cut(s) 1001
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 4 cut(s) 532, 920, 1129, 1240
AjiI CACGTC 2 cut(s) 258, 732
AjnI CCWGG 2 cut(s) 609, 1198
AluBI AGCT 8 cut(s) 483, 607, 711, 790, 799, 1000, 1006, 1034
AluI AGCT 8 cut(s) 483, 607, 711, 790, 799, 1000, 1006, 1034
Alw21I GWGCWC 1 cut(s) 986
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 8 cut(s) 516, 518, 537, 550, 558, 571, 582, 806
AlwNI CAGNNNCTG 1 cut(s) 1205
Aor51HI AGCGCT 1 cut(s) 250
ApaI GGGCCC 2 cut(s) 469, 654
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
AsiGI ACCGGT 1 cut(s) 392
AspLEI GCGC 8 cut(s) 230, 251, 383, 539, 620, 822, 824, 903
AsuHPI GGTGA 2 cut(s) 232, 1205
AvaII GGWCC 4 cut(s) 375, 399, 499, 1202
BaeGI GKGCMC 2 cut(s) 469, 654
BamHI GGATCC 2 cut(s) 542, 563
BanI GGYRCC 2 cut(s) 536, 617
BanII GRGCYC 2 cut(s) 469, 654
BauI CACGAG 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 986
BccI CCATC 3 cut(s) 215, 1015, 1278
BceAI ACGGC 4 cut(s) 550, 673, 682, 1333
BciT130I CCWGG 2 cut(s) 611, 1200
BcoDI GTCTC 1 cut(s) 672
BfaI CTAG 1 cut(s) 1254
BfoI RGCGCY 4 cut(s) 252, 384, 540, 621
BfrI CTTAAG 1 cut(s) 1001
BfuAI ACCTGC 1 cut(s) 1213
BglI GCCNNNNNGGC 2 cut(s) 694, 770
Bme1390I CCNGG 2 cut(s) 611, 1200
Bme18I GGWCC 4 cut(s) 375, 399, 499, 1202
BmgBI CACGTC 2 cut(s) 258, 732
BmrFI CCNGG 2 cut(s) 611, 1200
BmrI ACTGGG 2 cut(s) 1243, 1257
BmsI GCATC 2 cut(s) 169, 709
BmuI ACTGGG 2 cut(s) 1243, 1257
BpmI CTGGAG 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 917, 1070
BsaHI GRCGYC 3 cut(s) 537, 618, 672
BsaJI CCNNGG 2 cut(s) 567, 714
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 695, 725
Bsc4I CCNNNNNNNGG 4 cut(s) 396, 463, 475, 533
Bse118I RCCGGY 2 cut(s) 392, 614
Bse1I ACTGG 2 cut(s) 1249, 1263
Bse3DI GCAATG 2 cut(s) 136, 780
BseBI CCWGG 2 cut(s) 611, 1200
BseDI CCNNGG 2 cut(s) 567, 714
BseGI GGATG 3 cut(s) 52, 260, 724
BseLI CCNNNNNNNGG 4 cut(s) 396, 463, 475, 533
BseMI GCAATG 2 cut(s) 136, 780
BseMII CTCAG 2 cut(s) 971, 1049
BseNI ACTGG 2 cut(s) 1249, 1263
BsePI GCGCGC 1 cut(s) 820
BseRI GAGGAG 8 cut(s) 202, 205, 256, 259, 262, 277, 280, 584
BseSI GKGCMC 2 cut(s) 469, 654
BseX3I CGGCCG 1 cut(s) 686
BseYI CCCAGC 1 cut(s) 307
Bsh1236I CGCG 4 cut(s) 144, 228, 694, 822
Bsh1285I CGRYCG 1 cut(s) 689
BshNI GGYRCC 2 cut(s) 536, 617
BshTI ACCGGT 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 689
BsiHKAI GWGCWC 1 cut(s) 986
BsiSI CCGG 5 cut(s) 393, 494, 516, 540, 615
BslFI GGGAC 2 cut(s) 412, 980
BslI CCNNNNNNNGG 4 cut(s) 396, 463, 475, 533
BsmAI GTCTC 1 cut(s) 672
BsmFI GGGAC 2 cut(s) 412, 980
BsmI GAATGC 2 cut(s) 208, 1143
Bsp120I GGGCCC 2 cut(s) 465, 650
Bsp1286I GDGCHC 3 cut(s) 469, 654, 986
Bsp143I GATC 6 cut(s) 508, 523, 542, 563, 574, 811
BspCNI CTCAG 2 cut(s) 972, 1048
BspFNI CGCG 4 cut(s) 144, 228, 694, 822
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 8 cut(s) 516, 518, 537, 550, 558, 571, 582, 806
BspT107I GGYRCC 2 cut(s) 536, 617
BspTI CTTAAG 1 cut(s) 1001
BsrBI CCGCTC 1 cut(s) 233
BsrDI GCAATG 2 cut(s) 136, 780
BsrFI RCCGGY 2 cut(s) 392, 614
BsrI ACTGG 2 cut(s) 1249, 1263
BssAI RCCGGY 2 cut(s) 392, 614
BssECI CCNNGG 2 cut(s) 567, 714
BssHII GCGCGC 1 cut(s) 820
BssMI GATC 6 cut(s) 508, 523, 542, 563, 574, 811
BssNI GRCGYC 3 cut(s) 537, 618, 672
BssSI CACGAG 1 cut(s) 445
Bst2BI CACGAG 1 cut(s) 445
Bst2UI CCWGG 2 cut(s) 611, 1200
Bst4CI ACNGT 1 cut(s) 707
Bst6I CTCTTC 2 cut(s) 286, 584
BstACI GRCGYC 3 cut(s) 537, 618, 672
BstAFI CTTAAG 1 cut(s) 1001
BstAPI GCANNNNNTGC 1 cut(s) 1147
BstC8I GCNNGC 6 cut(s) 142, 616, 792, 822, 859, 880
BstDEI CTNAG 2 cut(s) 980, 1035
BstDSI CCRYGG 1 cut(s) 714
BstEII GGTNACC 1 cut(s) 1211
BstF5I GGATG 3 cut(s) 52, 260, 724
BstFNI CGCG 4 cut(s) 144, 228, 694, 822
BstH2I RGCGCY 4 cut(s) 252, 384, 540, 621
BstHHI GCGC 8 cut(s) 230, 251, 383, 539, 620, 822, 824, 903
BstKTI GATC 6 cut(s) 511, 526, 545, 566, 577, 814
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 6 cut(s) 508, 523, 542, 563, 574, 811
BstMCI CGRYCG 1 cut(s) 689
BstNI CCWGG 2 cut(s) 611, 1200
BstNSI RCATGY 1 cut(s) 1225
BstPI GGTNACC 1 cut(s) 1211
BstSCI CCNGG 2 cut(s) 609, 1198
BstSLI GKGCMC 2 cut(s) 469, 654
BstUI CGCG 4 cut(s) 144, 228, 694, 822
BstX2I RGATCY 4 cut(s) 508, 542, 563, 574
BstYI RGATCY 4 cut(s) 508, 542, 563, 574
BstZI CGGCCG 1 cut(s) 686
BtgI CCRYGG 1 cut(s) 714
BtgZI GCGATG 1 cut(s) 1034
BtrI CACGTC 2 cut(s) 258, 732
BtsCI GGATG 3 cut(s) 52, 260, 724
BtsIMutI CAGTG 2 cut(s) 984, 1061
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 6 cut(s) 142, 616, 792, 822, 859, 880
CaiI CAGNNNCTG 1 cut(s) 1205
CfoI GCGC 8 cut(s) 230, 251, 383, 539, 620, 822, 824, 903
Cfr10I RCCGGY 2 cut(s) 392, 614
CseI GACGC 3 cut(s) 155, 661, 711
Csp6I GTAC 1 cut(s) 1413
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 3 cut(s) 505, 757, 1222
CviQI GTAC 1 cut(s) 1413
DdeI CTNAG 2 cut(s) 980, 1035
DinI GGCGCC 2 cut(s) 538, 619
DpnI GATC 6 cut(s) 510, 525, 544, 565, 576, 813
DpnII GATC 6 cut(s) 508, 523, 542, 563, 574, 811
DrdI GACNNNNNNGTC 1 cut(s) 1209
DseDI GACNNNNNNGTC 1 cut(s) 1209
EaeI YGGCCR 1 cut(s) 686
EagI CGGCCG 1 cut(s) 686
Eam1104I CTCTTC 2 cut(s) 286, 584
EarI CTCTTC 2 cut(s) 286, 584
EciI GGCGGA 1 cut(s) 453
EclXI CGGCCG 1 cut(s) 686
Eco24I GRGCYC 2 cut(s) 469, 654
Eco47I GGWCC 4 cut(s) 375, 399, 499, 1202
Eco47III AGCGCT 1 cut(s) 250
Eco52I CGGCCG 1 cut(s) 686
Eco57I CTGAAG 2 cut(s) 1085, 1401
Eco91I GGTNACC 1 cut(s) 1211
EcoO109I RGGNCCY 6 cut(s) 399, 465, 499, 650, 1202, 1385
EcoO65I GGTNACC 1 cut(s) 1211
EcoRII CCWGG 2 cut(s) 609, 1198
EcoT38I GRGCYC 2 cut(s) 469, 654
EgeI GGCGCC 2 cut(s) 538, 619
EheI GGCGCC 2 cut(s) 538, 619
FaeI CATG 3 cut(s) 508, 760, 1225
FaqI GGGAC 2 cut(s) 412, 980
FatI CATG 3 cut(s) 504, 756, 1221
FauI CCCGC 2 cut(s) 149, 887
FblI GTMKAC 1 cut(s) 734
FokI GGATG 3 cut(s) 39, 247, 731
FriOI GRGCYC 2 cut(s) 469, 654
FspBI CTAG 1 cut(s) 1254
GlaI GCGC 8 cut(s) 229, 250, 382, 538, 619, 821, 823, 902
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 593
HaeII RGCGCY 4 cut(s) 252, 384, 540, 621
HapII CCGG 5 cut(s) 393, 494, 516, 540, 615
HgaI GACGC 3 cut(s) 155, 661, 711
HhaI GCGC 8 cut(s) 230, 251, 383, 539, 620, 822, 824, 903
Hin1I GRCGYC 3 cut(s) 537, 618, 672
Hin1II CATG 3 cut(s) 508, 760, 1225
Hin6I GCGC 8 cut(s) 228, 249, 381, 537, 618, 820, 822, 901
HinP1I GCGC 8 cut(s) 228, 249, 381, 537, 618, 820, 822, 901
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 4 cut(s) 223, 805, 1046, 1121
HpaII CCGG 5 cut(s) 393, 494, 516, 540, 615
HphI GGTGA 2 cut(s) 232, 1205
Hpy166II GTNNAC 3 cut(s) 6, 729, 735
Hpy188III TCNNGA 3 cut(s) 176, 809, 961
Hpy8I GTNNAC 3 cut(s) 6, 729, 735
Hpy99I CGWCG 7 cut(s) 149, 557, 677, 694, 727, 736, 739
HpyAV CCTTC 8 cut(s) 116, 286, 538, 763, 868, 926, 1063, 1376
HpyCH4III ACNGT 1 cut(s) 707
HpyCH4IV ACGT 2 cut(s) 257, 731
HpyCH4V TGCA 4 cut(s) 1141, 1225, 1312, 1400
HpyF3I CTNAG 2 cut(s) 980, 1035
HpySE526I ACGT 2 cut(s) 257, 731
Hsp92I GRCGYC 3 cut(s) 537, 618, 672
Hsp92II CATG 3 cut(s) 508, 760, 1225
HspAI GCGC 8 cut(s) 228, 249, 381, 537, 618, 820, 822, 901
KasI GGCGCC 2 cut(s) 536, 617
KflI GGGWCCC 1 cut(s) 399
KroI GCCGGC 1 cut(s) 614
KroNI GCCGGC 1 cut(s) 616
Kzo9I GATC 6 cut(s) 508, 523, 542, 563, 574, 811
LmnI GCTCC 3 cut(s) 238, 612, 716
LweI GCATC 2 cut(s) 169, 709
MaeI CTAG 1 cut(s) 1254
MaeII ACGT 2 cut(s) 257, 731
MaeIII GTNAC 4 cut(s) 1011, 1211, 1265, 1332
MalI GATC 6 cut(s) 510, 525, 544, 565, 576, 813
MbiI CCGCTC 1 cut(s) 233
MboI GATC 6 cut(s) 508, 523, 542, 563, 574, 811
MboII GAAGA 9 cut(s) 101, 104, 156, 159, 162, 273, 571, 1078, 1265
MflI RGATCY 4 cut(s) 508, 542, 563, 574
MhlI GDGCHC 3 cut(s) 469, 654, 986
MluCI AATT 3 cut(s) 64, 100, 1182
Mly113I GGCGCC 2 cut(s) 537, 618
MmeI TCCRAC 1 cut(s) 655
MroNI GCCGGC 1 cut(s) 614
MseI TTAA 2 cut(s) 1002, 1423
MspA1I CMGCKG 3 cut(s) 386, 429, 623
MspCI CTTAAG 1 cut(s) 1001
MspI CCGG 5 cut(s) 393, 494, 516, 540, 615
MspR9I CCNGG 2 cut(s) 611, 1200
Mva1269I GAATGC 2 cut(s) 208, 1143
MvaI CCWGG 2 cut(s) 611, 1200
MvnI CGCG 4 cut(s) 144, 228, 694, 822
NaeI GCCGGC 1 cut(s) 616
NarI GGCGCC 2 cut(s) 537, 618
NdeII GATC 6 cut(s) 508, 523, 542, 563, 574, 811
NgoMIV GCCGGC 1 cut(s) 614
NlaIII CATG 3 cut(s) 508, 760, 1225
NmuCI GTSAC 1 cut(s) 1211
NspI RCATGY 1 cut(s) 1225
PauI GCGCGC 1 cut(s) 820
PcsI WCGNNNNNNNCGW 1 cut(s) 731
PctI GAATGC 2 cut(s) 208, 1143
PdiI GCCGGC 1 cut(s) 616
PfeI GAWTC 4 cut(s) 223, 805, 1046, 1121
PinAI ACCGGT 1 cut(s) 392
PluTI GGCGCC 2 cut(s) 540, 621
PpuMI RGGWCCY 3 cut(s) 399, 499, 1202
Psp5II RGGWCCY 3 cut(s) 399, 499, 1202
Psp6I CCWGG 2 cut(s) 609, 1198
PspEI GGTNACC 1 cut(s) 1211
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 2 cut(s) 609, 1198
PspOMI GGGCCC 2 cut(s) 465, 650
PspPPI RGGWCCY 3 cut(s) 399, 499, 1202
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 4 cut(s) 508, 542, 563, 574
PteI GCGCGC 1 cut(s) 820
RsaI GTAC 1 cut(s) 1414
RsaNI GTAC 1 cut(s) 1413
SalI GTCGAC 1 cut(s) 733
SaqAI TTAA 2 cut(s) 1002, 1423
Sau3AI GATC 6 cut(s) 508, 523, 542, 563, 574, 811
ScrFI CCNGG 2 cut(s) 611, 1200
SduI GDGCHC 3 cut(s) 469, 654, 986
SfaNI GCATC 2 cut(s) 169, 709
SfoI GGCGCC 2 cut(s) 538, 619
SgrAI CRCCGGYG 1 cut(s) 392
SgrDI CGTCGACG 1 cut(s) 733
SinI GGWCC 4 cut(s) 375, 399, 499, 1202
SmlI CTYRAG 3 cut(s) 896, 1001, 1085
SmoI CTYRAG 3 cut(s) 896, 1001, 1085
Sse9I AATT 3 cut(s) 64, 100, 1182
SspDI GGCGCC 2 cut(s) 536, 617
SspMI CTAG 1 cut(s) 1254
StyD4I CCNGG 2 cut(s) 609, 1198
TaaI ACNGT 1 cut(s) 707
TaiI ACGT 2 cut(s) 260, 734
TaqI TCGA 3 cut(s) 594, 600, 734
TasI AATT 3 cut(s) 64, 100, 1182
TfiI GAWTC 4 cut(s) 223, 805, 1046, 1121
Tru1I TTAA 2 cut(s) 1002, 1423
Tru9I TTAA 2 cut(s) 1002, 1423
TscAI CASTG 2 cut(s) 991, 1068
TseFI GTSAC 1 cut(s) 1211
Tsp45I GTSAC 1 cut(s) 1211
TspDTI ATGAA 2 cut(s) 358, 1265
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 2 cut(s) 991, 1068
Vha464I CTTAAG 1 cut(s) 1001
VpaK11BI GGWCC 4 cut(s) 375, 399, 499, 1202
XceI RCATGY 1 cut(s) 1225
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 734
XspI CTAG 1 cut(s) 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.