Prupe.6G041400_v2.0.a1
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013648
Physical Location & Seq
Forward (+)
3060238 .. 3063169
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G041400.1

Sequence Viewer

Length: 1326 bp
ATGTCCACAGAAACCAGACCAATGCAAGATCCACAACAACATCAATCCAACCCTAACCCTAAATTCATCTCCATCAACAACGCCAGCTCCAACAATCCCAACCCCAAATCCAATCCAATCCCTCTCCCCAGAAGCATTGGCATTTCCAACAATGCCAATGCTTCTGGAGTAGCTGCCACGTCATCGTCTTCTTCCTCGCTCACATCATTGACTTTGACAATGCTGGGCAATTCCAACGCCCCTAAACCTTTCATCCGAGAAGAAGCTGGCGCAGCAGCAGCAGCGGAAGCTGGACCCCACCATCACAATAGCCACAGGAGGGCCCACTCGGAGGTGAGCTTCCGGTTGCCTCAGGACATGATGGATCTGTCCGCGCCGGATCAGTCCAAGGGCGGATCGTCTACGGCGAGTCTCGAGGAGATGGGATCGGAGGAGGACCTCTTCTCCACCTACATTGACCTCGACAAGCTCGGTGGGTGCAATTGCTCGGATCAGAGCGGTGGTGGTAATAAAGGGCCCAATGGTGGGCCTGATGATGGGTCTGGTGAGCCCAATGTAAATGATGGTGGTGGTGGTGAGGGAGAAGAGAAGAGGTCGTCGAGGCACAGGCATAGCTGCTCGGTGGATGGGTCGTCCACGTCAACCGGTGTGTTTGGGGAGGTCATGGAGGCCAAGAAGGCCATGCCTCCTGATAAGCTCGCTGAGCTCTGGAACCTTGATCCCAAACGCGCCAAAAGGATACTGGCAAATAGGCAGTCTGCTGCTCGCTCAAAAGAAAGGAAGGCTCGCTATATACAAGAACTTGAACGCAAAGTTCAGACCCTTCAAACAGAAGCCACCACTCTCTCTGCCCAACTCACATTATTCCAGAGGGATACAACAGGTCTGAGTACTGAAAACACAGAGCTTAAGCTTCGGTTACAAGCTATGGAGCAACAAGCCCAGTTGCGTGATGCACTAAATGAAGCACTGAAGAAAGAGGTCGAGAGGCTCAAGATTGCCACAGGGGAGATGATGAGTCCTTCTGAATCATTCAATTTGGGAATGCACCAGATGCCATACAACCATCCATCAGCTTATTTTCCACTTCAACAACAACCCGGACCTGCTGGTCACCAGAACATGCAGATGCCACAATTCAATCATTCCCAGTCTAATATGCCAACCCATCTTCTGCATCAATCAAATTCTCATACTTTTTCAGATATTATGCAGAACGGACCTGTTGGTCAGTTACAGGGGCTTGACATCGGTACCAAAGGAGCACCTCTCGTGAAGTCGGAAGGCCCCTCGCTTTCTGCAAGTGAAAGTAGTACCACTTTTTGA

Protein Analysis

442

Amino Acids

47.41

Weight (kDa)

6.12

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica Prupe.6G041400_v2.0.a1
pyrus_communis pycom03g04130 pycom11g04360
rosa_chinensis RchiOBHm_Chr5g0073151
rosa_laevigata RLG00000036369
rosa_multiflora Rmu_sc0021999.1_g000001
rosa_roxburghii Rroxscaffold_1G00008030
rosa_rugosa Rorug05G0421500
rosa_samantha Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana Rw5G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1110, 1227
Acc36I ACCTGC 1 cut(s) 1114
Acc65I GGTACC 1 cut(s) 1253
AccB1I GGYRCC 1 cut(s) 1253
AccBSI CCGCTC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 401
AccII CGCG 2 cut(s) 374, 729
AciI CCGC 4 cut(s) 284, 372, 393, 498
AclWI GGATC 7 cut(s) 23, 372, 387, 403, 433, 498, 713
AcsI RAATTY 2 cut(s) 62, 1186
AcuI CTGAAG 1 cut(s) 992
AfaI GTAC 3 cut(s) 892, 1255, 1315
AfiI CCNNNNNNNGG 5 cut(s) 319, 331, 524, 525, 536
AflII CTTAAG 1 cut(s) 908
AgeI ACCGGT 1 cut(s) 644
AgsI TTSAA 5 cut(s) 806, 827, 1036, 1091, 1141
AjiI CACGTC 2 cut(s) 180, 639
Alw21I GWGCWC 2 cut(s) 708, 1267
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 7 cut(s) 23, 372, 387, 403, 433, 498, 713
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 6 cut(s) 321, 515, 527, 669, 678, 1285
ApaI GGGCCC 2 cut(s) 325, 519
ApeKI GCWGC 7 cut(s) 173, 272, 275, 278, 281, 615, 761
ApoI RAATTY 2 cut(s) 62, 1186
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
AsiGI ACCGGT 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 1253
AspLEI GCGC 3 cut(s) 272, 376, 731
AsuC2I CCSGG 1 cut(s) 1101
AsuHPI GGTGA 4 cut(s) 346, 557, 587, 1106
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 4 cut(s) 293, 436, 1103, 1220
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 2 cut(s) 325, 519
BaeI ACNNNNGTAYC 2 cut(s) 1237, 1270
BanI GGYRCC 1 cut(s) 1253
BanII GRGCYC 4 cut(s) 325, 519, 552, 708
BauI CACGAG 1 cut(s) 1271
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 708, 1267
BbvI GCAGC 7 cut(s) 160, 284, 287, 290, 293, 602, 748
BceAI ACGGC 1 cut(s) 420
BciVI GTATCC 2 cut(s) 732, 868
BcnI CCSGG 1 cut(s) 1101
BcoDI GTCTC 1 cut(s) 416
BfrI CTTAAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 1114
BfuI GTATCC 2 cut(s) 732, 868
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 7 cut(s) 174, 273, 276, 279, 282, 616, 762
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 7 cut(s) 175, 274, 277, 280, 283, 617, 763
BmcAI AGTACT 1 cut(s) 892
Bme1390I CCNGG 1 cut(s) 1101
Bme18I GGWCC 4 cut(s) 293, 436, 1103, 1220
BmeT110I CYCGRG 1 cut(s) 413
BmgBI CACGTC 2 cut(s) 180, 639
BmiI GGNNCC 6 cut(s) 295, 323, 517, 713, 1255, 1288
BmrFI CCNGG 1 cut(s) 1101
BmrI ACTGGG 2 cut(s) 937, 1144
BmsI GCATC 4 cut(s) 943, 1044, 1119, 1186
BmuI ACTGGG 2 cut(s) 937, 1144
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 1254, 1286
BpmI CTGGAG 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 1 cut(s) 1101
BsaJI CCNNGG 1 cut(s) 387
BsaWI WCCGGW 2 cut(s) 342, 644
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 428, 458
Bsc4I CCNNNNNNNGG 5 cut(s) 319, 331, 524, 525, 536
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 3 cut(s) 747, 943, 1150
Bse21I CCTNAGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 3 cut(s) 252, 631, 1066
BseLI CCNNNNNNNGG 5 cut(s) 319, 331, 524, 525, 536
BseMII CTCAG 3 cut(s) 365, 693, 878
BseNI ACTGG 3 cut(s) 747, 943, 1150
BseRI GAGGAG 2 cut(s) 431, 446
BseSI GKGCMC 2 cut(s) 325, 519
BseXI GCAGC 7 cut(s) 160, 284, 287, 290, 293, 602, 748
BseYI CCCAGC 1 cut(s) 223
Bsh1236I CGCG 2 cut(s) 374, 729
BshFI GGCC 6 cut(s) 323, 517, 529, 671, 680, 1287
BshNI GGYRCC 1 cut(s) 1253
BshTI ACCGGT 1 cut(s) 644
BsiHKAI GWGCWC 2 cut(s) 708, 1267
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 4 cut(s) 343, 377, 645, 1101
BslI CCNNNNNNNGG 5 cut(s) 319, 331, 524, 525, 536
BsmAI GTCTC 1 cut(s) 416
BsmI GAATGC 1 cut(s) 1050
BsnI GGCC 6 cut(s) 323, 517, 529, 671, 680, 1287
BsoBI CYCGRG 1 cut(s) 413
Bsp120I GGGCCC 2 cut(s) 321, 515
Bsp1286I GDGCHC 5 cut(s) 325, 519, 552, 708, 1267
Bsp143I GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 4 cut(s) 284, 372, 393, 498
BspANI GGCC 6 cut(s) 323, 517, 529, 671, 680, 1287
BspCNI CTCAG 3 cut(s) 364, 694, 879
BspFNI CGCG 2 cut(s) 374, 729
BspLI GGNNCC 6 cut(s) 295, 323, 517, 713, 1255, 1288
BspMI ACCTGC 1 cut(s) 1114
BspPI GGATC 7 cut(s) 23, 372, 387, 403, 433, 498, 713
BspT107I GGYRCC 1 cut(s) 1253
BspTI CTTAAG 1 cut(s) 908
BsrBI CCGCTC 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 3 cut(s) 747, 943, 1150
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
BssSI CACGAG 1 cut(s) 1271
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 1271
Bst6I CTCTTC 3 cut(s) 446, 579, 584
BstAFI CTTAAG 1 cut(s) 908
BstAPI GCANNNNNTGC 1 cut(s) 1054
BstC8I GCNNGC 5 cut(s) 85, 268, 699, 766, 787
BstDEI CTNAG 3 cut(s) 351, 702, 887
BstEII GGTNACC 1 cut(s) 1112
BstF5I GGATG 3 cut(s) 252, 631, 1066
BstFNI CGCG 2 cut(s) 374, 729
BstHHI GCGC 3 cut(s) 272, 376, 731
BstKTI GATC 7 cut(s) 31, 367, 382, 398, 428, 493, 721
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
BstMWI GCNNNNNNNGC 7 cut(s) 272, 278, 281, 287, 677, 703, 1054
BstNSI RCATGY 1 cut(s) 1126
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 1 cut(s) 1099
BstSLI GKGCMC 2 cut(s) 325, 519
BstUI CGCG 2 cut(s) 374, 729
BstV1I GCAGC 7 cut(s) 160, 284, 287, 290, 293, 602, 748
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 2 cut(s) 28, 364
BstYI RGATCY 2 cut(s) 28, 364
Bsu36I CCTNAGG 1 cut(s) 351
BsuI GTATCC 2 cut(s) 732, 868
BsuRI GGCC 6 cut(s) 323, 517, 529, 671, 680, 1287
BtrI CACGTC 2 cut(s) 180, 639
BtsCI GGATG 3 cut(s) 252, 631, 1066
BtsIMutI CAGTG 1 cut(s) 968
BveI ACCTGC 1 cut(s) 1114
Cac8I GCNNGC 5 cut(s) 85, 268, 699, 766, 787
CfoI GCGC 3 cut(s) 272, 376, 731
Cfr10I RCCGGY 1 cut(s) 644
Csp6I GTAC 3 cut(s) 891, 1254, 1314
CspAI ACCGGT 1 cut(s) 644
CspCI CAANNNNNGTGG 4 cut(s) 436, 454, 471, 489
CviAII CATG 4 cut(s) 358, 664, 682, 1123
CviQI GTAC 3 cut(s) 891, 1254, 1314
DdeI CTNAG 3 cut(s) 351, 702, 887
DpnI GATC 7 cut(s) 30, 366, 381, 397, 427, 492, 720
DpnII GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
DrdI GACNNNNNNGTC 2 cut(s) 1110, 1227
DseDI GACNNNNNNGTC 2 cut(s) 1110, 1227
Eam1104I CTCTTC 3 cut(s) 446, 579, 584
EarI CTCTTC 3 cut(s) 446, 579, 584
EciI GGCGGA 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 706
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 4 cut(s) 325, 519, 552, 708
Eco47I GGWCC 4 cut(s) 293, 436, 1103, 1220
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 992
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 1112
EcoICRI GAGCTC 1 cut(s) 706
EcoO109I RGGNCCY 4 cut(s) 321, 436, 515, 1286
EcoO65I GGTNACC 1 cut(s) 1112
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 4 cut(s) 325, 519, 552, 708
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 4 cut(s) 361, 667, 685, 1126
FatI CATG 4 cut(s) 357, 663, 681, 1122
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 7 cut(s) 174, 273, 276, 279, 282, 616, 762
FokI GGATG 3 cut(s) 239, 638, 1053
FriOI GRGCYC 4 cut(s) 325, 519, 552, 708
Fsp4HI GCNGC 7 cut(s) 174, 273, 276, 279, 282, 616, 762
GlaI GCGC 3 cut(s) 271, 375, 730
GluI GCNGC 7 cut(s) 174, 273, 276, 279, 282, 616, 762
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 6 cut(s) 323, 517, 529, 671, 680, 1287
HapII CCGG 4 cut(s) 343, 377, 645, 1101
HhaI GCGC 3 cut(s) 272, 376, 731
Hin1II CATG 4 cut(s) 361, 667, 685, 1126
Hin6I GCGC 3 cut(s) 270, 374, 729
HinP1I GCGC 3 cut(s) 270, 374, 729
HincII GTYRAC 1 cut(s) 642
HindII GTYRAC 1 cut(s) 642
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 3 cut(s) 409, 1018, 1028
HpaII CCGG 4 cut(s) 343, 377, 645, 1101
HphI GGTGA 4 cut(s) 346, 557, 587, 1106
Hpy166II GTNNAC 4 cut(s) 6, 402, 636, 642
Hpy188III TCNNGA 9 cut(s) 165, 353, 413, 689, 709, 868, 985, 994, 1273
Hpy8I GTNNAC 4 cut(s) 6, 402, 636, 642
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 5 cut(s) 670, 775, 833, 1032, 1277
HpyCH4IV ACGT 2 cut(s) 179, 638
HpyCH4V TGCA 8 cut(s) 25, 480, 956, 1048, 1126, 1177, 1213, 1301
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 278, 281, 287, 677, 703, 1054
HpyF3I CTNAG 3 cut(s) 351, 702, 887
HpySE526I ACGT 2 cut(s) 179, 638
Hsp92II CATG 4 cut(s) 361, 667, 685, 1126
HspAI GCGC 3 cut(s) 270, 374, 729
KpnI GGTACC 1 cut(s) 1257
Kzo9I GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
LmnI GCTCC 3 cut(s) 92, 931, 1262
Lsp1109I GCAGC 7 cut(s) 160, 284, 287, 290, 293, 602, 748
LweI GCATC 4 cut(s) 943, 1044, 1119, 1186
MaeII ACGT 2 cut(s) 179, 638
MaeIII GTNAC 3 cut(s) 918, 1112, 1233
MalI GATC 7 cut(s) 30, 366, 381, 397, 427, 492, 720
MbiI CCGCTC 1 cut(s) 498
MboI GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
MboII GAAGA 8 cut(s) 180, 183, 272, 433, 596, 601, 985, 1163
MfeI CAATTG 1 cut(s) 481
MflI RGATCY 2 cut(s) 28, 364
MhlI GDGCHC 5 cut(s) 325, 519, 552, 708, 1267
MluCI AATT 6 cut(s) 62, 229, 481, 1036, 1136, 1186
MlyI GAGTC 2 cut(s) 418, 1027
MmeI TCCRAC 5 cut(s) 72, 114, 171, 258, 1260
MseI TTAA 1 cut(s) 909
MslI CAYNNNNRTG 1 cut(s) 1127
MspA1I CMGCKG 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 908
MspI CCGG 4 cut(s) 343, 377, 645, 1101
MspR9I CCNGG 1 cut(s) 1101
MunI CAATTG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 1050
MvnI CGCG 2 cut(s) 374, 729
MwoI GCNNNNNNNGC 7 cut(s) 272, 278, 281, 287, 677, 703, 1054
NciI CCSGG 1 cut(s) 1101
NdeII GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
NlaIII CATG 4 cut(s) 361, 667, 685, 1126
NlaIV GGNNCC 6 cut(s) 295, 323, 517, 713, 1255, 1288
NmuCI GTSAC 1 cut(s) 1112
NspI RCATGY 1 cut(s) 1126
PaeR7I CTCGAG 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PctI GAATGC 1 cut(s) 1050
PfeI GAWTC 1 cut(s) 1028
PinAI ACCGGT 1 cut(s) 644
PkrI GCNGC 7 cut(s) 175, 274, 277, 280, 283, 617, 763
PleI GAGTC 2 cut(s) 417, 1026
PpsI GAGTC 2 cut(s) 417, 1026
PpuMI RGGWCCY 1 cut(s) 436
Psp124BI GAGCTC 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 436
PspEI GGTNACC 1 cut(s) 1112
PspFI CCCAGC 1 cut(s) 223
PspN4I GGNNCC 6 cut(s) 295, 323, 517, 713, 1255, 1288
PspOMI GGGCCC 2 cut(s) 321, 515
PspPPI RGGWCCY 1 cut(s) 436
PsuI RGATCY 2 cut(s) 28, 364
RsaI GTAC 3 cut(s) 892, 1255, 1315
RsaNI GTAC 3 cut(s) 891, 1254, 1314
RseI CAYNNNNRTG 1 cut(s) 1127
SacI GAGCTC 1 cut(s) 708
SaqAI TTAA 1 cut(s) 909
SatI GCNGC 7 cut(s) 174, 273, 276, 279, 282, 616, 762
Sau3AI GATC 7 cut(s) 28, 364, 379, 395, 425, 490, 718
ScaI AGTACT 1 cut(s) 892
SchI GAGTC 2 cut(s) 418, 1027
ScrFI CCNGG 1 cut(s) 1101
SduI GDGCHC 5 cut(s) 325, 519, 552, 708, 1267
SfaNI GCATC 4 cut(s) 943, 1044, 1119, 1186
SfiI GGCCNNNNNGGCC 1 cut(s) 677
Sfr274I CTCGAG 1 cut(s) 413
SinI GGWCC 4 cut(s) 293, 436, 1103, 1220
SlaI CTCGAG 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 1127
SmlI CTYRAG 3 cut(s) 413, 908, 992
SmoI CTYRAG 3 cut(s) 413, 908, 992
Sse9I AATT 6 cut(s) 62, 229, 481, 1036, 1136, 1186
SsiI CCGC 4 cut(s) 284, 372, 393, 498
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 1099
StyI CCWWGG 1 cut(s) 387
TaiI ACGT 2 cut(s) 182, 641
TaqI TCGA 4 cut(s) 414, 462, 599, 984
TasI AATT 6 cut(s) 62, 229, 481, 1036, 1136, 1186
TatI WGTACW 1 cut(s) 890
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 1 cut(s) 909
Tru9I TTAA 1 cut(s) 909
TscAI CASTG 1 cut(s) 975
TseFI GTSAC 1 cut(s) 1112
TseI GCWGC 7 cut(s) 173, 272, 275, 278, 281, 615, 761
Tsp45I GTSAC 1 cut(s) 1112
TspDTI ATGAA 3 cut(s) 55, 241, 978
TspGWI ACGGA 1 cut(s) 1233
TspRI CASTG 1 cut(s) 975
Vha464I CTTAAG 1 cut(s) 908
VpaK11BI GGWCC 4 cut(s) 293, 436, 1103, 1220
XapI RAATTY 2 cut(s) 62, 1186
XceI RCATGY 1 cut(s) 1126
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XhoI CTCGAG 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 401
ZrmI AGTACT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.