RchiOBHm_Chr5g0073151
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013648
Physical Location & Seq
Reverse (-)
79247368 .. 79250269
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34806

Sequence Viewer

Length: 1428 bp
ATGTCCACACTTCCACAACAAGAACCACAACCACCAAACCCAAACCCAACCCCAACCCCAATGCAGCAACATCCACTCCCCAATTCCAATCCCAATCCCAATCCCAACCCTAACCCTAATTCCCTTCTTCTTCCCAGAACCATTGCCAATGCCAACACCCGCGACGCTGCCAATGCTGCTTCTGCTTCTTCTTCTCCTGATGCGAATGTGAATGTGAATGCCATCTCCTCCTCCGAGAATCGCGCCGCTCCATTCACCACCAGCGCTGCCACGTCATCCTCCTCCTCCTCTTCCTCCTCCTCCACTACAACAATGCTGGGCAGCACCACTTCCCCCGTTCCCAACAACAACAACAACAACCACAACCACCCTTTCATTAGGTCCACCGCCGCTGCCACCGGTGGGACCCACCACCACCACAGCAGCGGCAGCGGCACGAGCATAAACCACAGGAGGGCCCACTCGGAGGTCAGCTTTCGGTTGCCGGAGGACCTCATGGATCTCTCCGGCCCCGATCCCTTCAACGGCGCCGGATCCTCCACCGACGACTTGGGATCCGAGGAGGATCTCTTCTCCACCTACATCGACCTCGACAAGCTCCAGGCCGGCGCCGCTGACGACAATGGGCCTGATGATATCAAGGGGCCCAATGGGCCCAATGAGAACAACGGCGGCGTCGGAGAGAAGCGGCCGTCGCGGCACAGGCACAGTAGCTCGGTGGATGCGTCGTCCACGTCGACGGGTGTGTTCGGAGAGGTCATGGAGGCCAAGAAGGCAATGCCGCCTGATAAGCTCGCCGAGCTTTGGAATCTTGATCCAAAGCGCGCCAAAAGGATATTAGCAAATCGGCAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCCCGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAAACAGAAGCAACCACTCTTTCTGCCCAACTCACATTATTCCAGAGGGACACAACAGGTCTGAGCACTGAAAACACAGAGCTTAAGCTTCGGTTACAAGCTATGGAACAACAAGCTCAGTTGCGAGATTCTCTAAACGAAGCACTGAAGAAGGAGGTTGAGAGGCTCAAGGTTGCCACAGGGGAGATGATGAGCCATTCAGAATCATTCAACTTGGGAATGCACCAAATGCCATACAACAACAACCTGTCCGCTTATTTTCCAATTACACAACAGCAACCAGGACCTGCTGGTCACCAGAACATGCAGTTGCCACCTTTCAATCATTCCCAGTCTAGTATGCCCAGTAACCATCTTCATCAGCCAAACTCTCATACTCTTTCAGATATTATGCAGAACGGCCCTGTTGGTCAGTTACAGGGGCTTGACATCAGTAATAAAATGCCACATCTCGTGAAGTCTGAAGGCCCCTCGCTTTCTGCAAGTGAGAGTAGTACCACTTTTTAA

Protein Analysis

475

Amino Acids

51.08

Weight (kDa)

6.17

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 271 - 321 2.3e-06 Basic region leucine zipper
bZIP_1 PF00170 274 - 322 2.5e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013648)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica Prupe.6G041400_v2.0.a1
pyrus_communis pycom03g04130 pycom11g04360
rosa_chinensis RchiOBHm_Chr5g0073151
rosa_laevigata RLG00000036369
rosa_multiflora Rmu_sc0021999.1_g000001
rosa_roxburghii Rroxscaffold_1G00008030
rosa_rugosa Rorug05G0421500
rosa_samantha Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana Rw5G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1212
Acc36I ACCTGC 1 cut(s) 1216
AccB1I GGYRCC 2 cut(s) 527, 608
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 1 cut(s) 737
AccII CGCG 4 cut(s) 162, 243, 697, 825
AclWI GGATC 8 cut(s) 507, 509, 528, 541, 549, 562, 573, 809
AcoI YGGCCR 1 cut(s) 689
AcuI CTGAAG 2 cut(s) 1088, 1404
AcyI GRCGYC 3 cut(s) 528, 609, 675
AfaI GTAC 1 cut(s) 1417
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 5 cut(s) 402, 454, 466, 524, 804
AflII CTTAAG 1 cut(s) 1004
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 4 cut(s) 523, 923, 1132, 1243
AjiI CACGTC 2 cut(s) 273, 735
AjnI CCWGG 2 cut(s) 600, 1201
AluBI AGCT 9 cut(s) 474, 598, 714, 793, 802, 1003, 1009, 1022, 1037
AluI AGCT 9 cut(s) 474, 598, 714, 793, 802, 1003, 1009, 1022, 1037
Alw21I GWGCWC 1 cut(s) 989
AlwI GGATC 8 cut(s) 507, 509, 528, 541, 549, 562, 573, 809
AlwNI CAGNNNCTG 1 cut(s) 1208
Aor51HI AGCGCT 1 cut(s) 265
ApaI GGGCCC 3 cut(s) 460, 648, 657
ApeKI GCWGC 9 cut(s) 64, 167, 176, 266, 321, 392, 423, 429, 857
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
AsiGI ACCGGT 1 cut(s) 398
AspLEI GCGC 7 cut(s) 245, 266, 530, 611, 825, 827, 906
AsuHPI GGTGA 2 cut(s) 247, 1208
AvaII GGWCC 4 cut(s) 381, 405, 490, 1205
BaeGI GKGCMC 3 cut(s) 460, 648, 657
BamHI GGATCC 2 cut(s) 533, 554
BanI GGYRCC 2 cut(s) 527, 608
BanII GRGCYC 3 cut(s) 460, 648, 657
BauI CACGAG 2 cut(s) 436, 1373
Bbv12I GWGCWC 1 cut(s) 989
BbvI GCAGC 9 cut(s) 76, 154, 163, 253, 333, 379, 435, 441, 844
BccI CCATC 2 cut(s) 230, 1281
BceAI ACGGC 4 cut(s) 541, 676, 685, 1336
BciT130I CCWGG 2 cut(s) 602, 1203
BfaI CTAG 1 cut(s) 1257
BfoI RGCGCY 3 cut(s) 267, 531, 612
BfrI CTTAAG 1 cut(s) 1004
BfuAI ACCTGC 1 cut(s) 1216
BglI GCCNNNNNGGC 3 cut(s) 652, 697, 773
Bme1390I CCNGG 2 cut(s) 602, 1203
Bme18I GGWCC 4 cut(s) 381, 405, 490, 1205
BmgBI CACGTC 2 cut(s) 273, 735
BmrFI CCNGG 2 cut(s) 602, 1203
BmrI ACTGGG 2 cut(s) 1246, 1260
BmsI GCATC 2 cut(s) 190, 712
BmuI ACTGGG 2 cut(s) 1246, 1260
BpmI CTGGAG 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 920, 1073
BsaHI GRCGYC 3 cut(s) 528, 609, 675
BsaJI CCNNGG 1 cut(s) 558
BsaWI WCCGGW 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 5 cut(s) 402, 454, 466, 524, 804
Bse118I RCCGGY 2 cut(s) 398, 605
Bse1I ACTGG 2 cut(s) 1252, 1266
Bse3DI GCAATG 2 cut(s) 141, 783
BseBI CCWGG 2 cut(s) 602, 1203
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 3 cut(s) 70, 275, 727
BseLI CCNNNNNNNGG 5 cut(s) 402, 454, 466, 524, 804
BseMI GCAATG 2 cut(s) 141, 783
BseMII CTCAG 2 cut(s) 974, 1052
BseNI ACTGG 2 cut(s) 1252, 1266
BsePI GCGCGC 1 cut(s) 823
BseRI GAGGAG 8 cut(s) 217, 220, 271, 274, 277, 286, 289, 575
BseSI GKGCMC 3 cut(s) 460, 648, 657
BseX3I CGGCCG 1 cut(s) 689
BseXI GCAGC 9 cut(s) 76, 154, 163, 253, 333, 379, 435, 441, 844
BseYI CCCAGC 1 cut(s) 316
Bsh1236I CGCG 4 cut(s) 162, 243, 697, 825
Bsh1285I CGRYCG 1 cut(s) 692
BshNI GGYRCC 2 cut(s) 527, 608
BshTI ACCGGT 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 989
BsiSI CCGG 5 cut(s) 399, 485, 507, 531, 606
BslFI GGGAC 2 cut(s) 418, 983
BslI CCNNNNNNNGG 5 cut(s) 402, 454, 466, 524, 804
BsmFI GGGAC 2 cut(s) 418, 983
BsmI GAATGC 2 cut(s) 223, 1146
Bsp120I GGGCCC 3 cut(s) 456, 644, 653
Bsp1286I GDGCHC 4 cut(s) 460, 648, 657, 989
Bsp143I GATC 6 cut(s) 499, 514, 533, 554, 565, 814
BspCNI CTCAG 2 cut(s) 975, 1051
BspFNI CGCG 4 cut(s) 162, 243, 697, 825
BspMI ACCTGC 1 cut(s) 1216
BspPI GGATC 8 cut(s) 507, 509, 528, 541, 549, 562, 573, 809
BspT107I GGYRCC 2 cut(s) 527, 608
BspTI CTTAAG 1 cut(s) 1004
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 141, 783
BsrFI RCCGGY 2 cut(s) 398, 605
BsrI ACTGG 2 cut(s) 1252, 1266
BssAI RCCGGY 2 cut(s) 398, 605
BssECI CCNNGG 1 cut(s) 558
BssHII GCGCGC 1 cut(s) 823
BssMI GATC 6 cut(s) 499, 514, 533, 554, 565, 814
BssNI GRCGYC 3 cut(s) 528, 609, 675
BssSI CACGAG 2 cut(s) 436, 1373
Bst2BI CACGAG 2 cut(s) 436, 1373
Bst2UI CCWGG 2 cut(s) 602, 1203
Bst4CI ACNGT 1 cut(s) 710
Bst6I CTCTTC 2 cut(s) 295, 575
BstACI GRCGYC 3 cut(s) 528, 609, 675
BstAFI CTTAAG 1 cut(s) 1004
BstAPI GCANNNNNTGC 1 cut(s) 1150
BstC8I GCNNGC 5 cut(s) 607, 795, 825, 862, 883
BstDEI CTNAG 2 cut(s) 983, 1038
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 3 cut(s) 70, 275, 727
BstFNI CGCG 4 cut(s) 162, 243, 697, 825
BstH2I RGCGCY 3 cut(s) 267, 531, 612
BstHHI GCGC 7 cut(s) 245, 266, 530, 611, 825, 827, 906
BstKTI GATC 6 cut(s) 502, 517, 536, 557, 568, 817
BstMBI GATC 6 cut(s) 499, 514, 533, 554, 565, 814
BstMCI CGRYCG 1 cut(s) 692
BstNI CCWGG 2 cut(s) 602, 1203
BstNSI RCATGY 1 cut(s) 1228
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 2 cut(s) 600, 1201
BstSLI GKGCMC 3 cut(s) 460, 648, 657
BstUI CGCG 4 cut(s) 162, 243, 697, 825
BstV1I GCAGC 9 cut(s) 76, 154, 163, 253, 333, 379, 435, 441, 844
BstX2I RGATCY 4 cut(s) 499, 533, 554, 565
BstYI RGATCY 4 cut(s) 499, 533, 554, 565
BstZI CGGCCG 1 cut(s) 689
BtrI CACGTC 2 cut(s) 273, 735
BtsCI GGATG 3 cut(s) 70, 275, 727
BtsIMutI CAGTG 2 cut(s) 987, 1064
BveI ACCTGC 1 cut(s) 1216
Cac8I GCNNGC 5 cut(s) 607, 795, 825, 862, 883
CaiI CAGNNNCTG 1 cut(s) 1208
CfoI GCGC 7 cut(s) 245, 266, 530, 611, 825, 827, 906
Cfr10I RCCGGY 2 cut(s) 398, 605
CseI GACGC 3 cut(s) 173, 664, 714
Csp6I GTAC 1 cut(s) 1416
CspAI ACCGGT 1 cut(s) 398
CviAII CATG 3 cut(s) 496, 760, 1225
CviQI GTAC 1 cut(s) 1416
DdeI CTNAG 2 cut(s) 983, 1038
DinI GGCGCC 2 cut(s) 529, 610
DpnI GATC 6 cut(s) 501, 516, 535, 556, 567, 816
DpnII GATC 6 cut(s) 499, 514, 533, 554, 565, 814
DrdI GACNNNNNNGTC 1 cut(s) 1212
DseDI GACNNNNNNGTC 1 cut(s) 1212
EaeI YGGCCR 1 cut(s) 689
EagI CGGCCG 1 cut(s) 689
Eam1104I CTCTTC 2 cut(s) 295, 575
EarI CTCTTC 2 cut(s) 295, 575
EclXI CGGCCG 1 cut(s) 689
Eco24I GRGCYC 3 cut(s) 460, 648, 657
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 4 cut(s) 381, 405, 490, 1205
Eco47III AGCGCT 1 cut(s) 265
Eco52I CGGCCG 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 1088, 1404
Eco91I GGTNACC 1 cut(s) 1214
EcoO109I RGGNCCY 6 cut(s) 405, 456, 490, 644, 1205, 1388
EcoO65I GGTNACC 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 600, 1201
EcoRV GATATC 1 cut(s) 637
EcoT38I GRGCYC 3 cut(s) 460, 648, 657
EgeI GGCGCC 2 cut(s) 529, 610
EheI GGCGCC 2 cut(s) 529, 610
FaeI CATG 3 cut(s) 499, 763, 1228
FaqI GGGAC 2 cut(s) 418, 983
FatI CATG 3 cut(s) 495, 759, 1224
FauI CCCGC 2 cut(s) 167, 890
FblI GTMKAC 1 cut(s) 737
FokI GGATG 3 cut(s) 57, 262, 734
FriOI GRGCYC 3 cut(s) 460, 648, 657
FspBI CTAG 1 cut(s) 1257
GlaI GCGC 7 cut(s) 244, 265, 529, 610, 824, 826, 905
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 584
HaeII RGCGCY 3 cut(s) 267, 531, 612
HapII CCGG 5 cut(s) 399, 485, 507, 531, 606
HgaI GACGC 3 cut(s) 173, 664, 714
HhaI GCGC 7 cut(s) 245, 266, 530, 611, 825, 827, 906
Hin1I GRCGYC 3 cut(s) 528, 609, 675
Hin1II CATG 3 cut(s) 499, 763, 1228
Hin6I GCGC 7 cut(s) 243, 264, 528, 609, 823, 825, 904
HinP1I GCGC 7 cut(s) 243, 264, 528, 609, 823, 825, 904
HincII GTYRAC 1 cut(s) 738
HindII GTYRAC 1 cut(s) 738
HindIII AAGCTT 1 cut(s) 1007
HinfI GANTC 4 cut(s) 238, 808, 1049, 1124
HpaII CCGG 5 cut(s) 399, 485, 507, 531, 606
HphI GGTGA 2 cut(s) 247, 1208
Hpy166II GTNNAC 4 cut(s) 6, 384, 732, 738
Hpy188III TCNNGA 4 cut(s) 197, 812, 964, 1375
Hpy8I GTNNAC 4 cut(s) 6, 384, 732, 738
Hpy99I CGWCG 7 cut(s) 167, 548, 680, 697, 730, 739, 742
HpyAV CCTTC 7 cut(s) 134, 529, 766, 871, 929, 1066, 1379
HpyCH4III ACNGT 1 cut(s) 710
HpyCH4IV ACGT 2 cut(s) 272, 734
HpyCH4V TGCA 5 cut(s) 64, 1144, 1228, 1315, 1403
HpyF3I CTNAG 2 cut(s) 983, 1038
HpySE526I ACGT 2 cut(s) 272, 734
Hsp92I GRCGYC 3 cut(s) 528, 609, 675
Hsp92II CATG 3 cut(s) 499, 763, 1228
HspAI GCGC 7 cut(s) 243, 264, 528, 609, 823, 825, 904
KasI GGCGCC 2 cut(s) 527, 608
KflI GGGWCCC 1 cut(s) 405
KroI GCCGGC 1 cut(s) 605
KroNI GCCGGC 1 cut(s) 607
Kzo9I GATC 6 cut(s) 499, 514, 533, 554, 565, 814
LmnI GCTCC 2 cut(s) 253, 603
Lsp1109I GCAGC 9 cut(s) 76, 154, 163, 253, 333, 379, 435, 441, 844
LweI GCATC 2 cut(s) 190, 712
MaeI CTAG 1 cut(s) 1257
MaeII ACGT 2 cut(s) 272, 734
MaeIII GTNAC 4 cut(s) 1014, 1214, 1268, 1335
MalI GATC 6 cut(s) 501, 516, 535, 556, 567, 816
MbiI CCGCTC 1 cut(s) 248
MboI GATC 6 cut(s) 499, 514, 533, 554, 565, 814
MboII GAAGA 8 cut(s) 119, 122, 180, 183, 282, 562, 1081, 1268
MflI RGATCY 4 cut(s) 499, 533, 554, 565
MhlI GDGCHC 4 cut(s) 460, 648, 657, 989
MluCI AATT 3 cut(s) 82, 118, 1185
Mly113I GGCGCC 2 cut(s) 528, 609
MmeI TCCRAC 1 cut(s) 658
MroNI GCCGGC 1 cut(s) 605
MseI TTAA 2 cut(s) 1005, 1426
MspA1I CMGCKG 4 cut(s) 392, 426, 432, 614
MspCI CTTAAG 1 cut(s) 1004
MspI CCGG 5 cut(s) 399, 485, 507, 531, 606
MspR9I CCNGG 2 cut(s) 602, 1203
Mva1269I GAATGC 2 cut(s) 223, 1146
MvaI CCWGG 2 cut(s) 602, 1203
MvnI CGCG 4 cut(s) 162, 243, 697, 825
NaeI GCCGGC 1 cut(s) 607
NarI GGCGCC 2 cut(s) 528, 609
NdeII GATC 6 cut(s) 499, 514, 533, 554, 565, 814
NgoMIV GCCGGC 1 cut(s) 605
NlaIII CATG 3 cut(s) 499, 763, 1228
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 1214
NspI RCATGY 1 cut(s) 1228
PauI GCGCGC 1 cut(s) 823
PcsI WCGNNNNNNNCGW 2 cut(s) 722, 734
PctI GAATGC 2 cut(s) 223, 1146
PdiI GCCGGC 1 cut(s) 607
PfeI GAWTC 4 cut(s) 238, 808, 1049, 1124
PinAI ACCGGT 1 cut(s) 398
PluTI GGCGCC 2 cut(s) 531, 612
PpuMI RGGWCCY 3 cut(s) 405, 490, 1205
Psp5II RGGWCCY 3 cut(s) 405, 490, 1205
Psp6I CCWGG 2 cut(s) 600, 1201
PspEI GGTNACC 1 cut(s) 1214
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 2 cut(s) 600, 1201
PspOMI GGGCCC 3 cut(s) 456, 644, 653
PspPPI RGGWCCY 3 cut(s) 405, 490, 1205
PstNI CAGNNNCTG 1 cut(s) 1208
PsuI RGATCY 4 cut(s) 499, 533, 554, 565
PteI GCGCGC 1 cut(s) 823
RsaI GTAC 1 cut(s) 1417
RsaNI GTAC 1 cut(s) 1416
SalI GTCGAC 1 cut(s) 736
SaqAI TTAA 2 cut(s) 1005, 1426
Sau3AI GATC 6 cut(s) 499, 514, 533, 554, 565, 814
ScrFI CCNGG 2 cut(s) 602, 1203
SduI GDGCHC 4 cut(s) 460, 648, 657, 989
SfaNI GCATC 2 cut(s) 190, 712
SfiI GGCCNNNNNGGCC 1 cut(s) 652
SfoI GGCGCC 2 cut(s) 529, 610
SgrAI CRCCGGYG 1 cut(s) 398
SgrDI CGTCGACG 1 cut(s) 736
SinI GGWCC 4 cut(s) 381, 405, 490, 1205
SmlI CTYRAG 3 cut(s) 899, 1004, 1088
SmoI CTYRAG 3 cut(s) 899, 1004, 1088
Sse9I AATT 3 cut(s) 82, 118, 1185
SspDI GGCGCC 2 cut(s) 527, 608
SspMI CTAG 1 cut(s) 1257
StyD4I CCNGG 2 cut(s) 600, 1201
TaaI ACNGT 1 cut(s) 710
TaiI ACGT 2 cut(s) 275, 737
TaqI TCGA 3 cut(s) 585, 591, 737
TasI AATT 3 cut(s) 82, 118, 1185
TauI GCSGC 9 cut(s) 248, 392, 429, 435, 614, 675, 691, 700, 784
TfiI GAWTC 4 cut(s) 238, 808, 1049, 1124
Tru1I TTAA 2 cut(s) 1005, 1426
Tru9I TTAA 2 cut(s) 1005, 1426
TscAI CASTG 2 cut(s) 994, 1071
TseFI GTSAC 1 cut(s) 1214
TseI GCWGC 9 cut(s) 64, 167, 176, 266, 321, 392, 423, 429, 857
Tsp45I GTSAC 1 cut(s) 1214
TspDTI ATGAA 2 cut(s) 364, 1268
TspRI CASTG 2 cut(s) 994, 1071
Vha464I CTTAAG 1 cut(s) 1004
VpaK11BI GGWCC 4 cut(s) 381, 405, 490, 1205
XceI RCATGY 1 cut(s) 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 737
XspI CTAG 1 cut(s) 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.