Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013648

Physical Location & Seq

Genomic Coordinates Reverse (-)

58556116 .. 58559239

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0421500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGAATCGGAAGCAGTAGCGCCGGTCGCCGGAGGCACCGGCCGCCTCCGCCTCCGACTCCGACTCCGGCTCATCCACAACCTCAAAATGGTGGCAGATATGGTTACGCTGGTGCCTCACCACCTTACCCGCCCCAATATCCAAACGAACCAATCCCCAATCCAGGCCAGTACCACCAATACCCACATCAATTTCCCAACGGACCAAATCCCAATCAAGCCCATTTCTACCAGTACTCTGCATTCTATCCACCGCCGCCGATACCGGGCGCGTACCACCGCGGCGGGGCCTTCATGGGCCCTCCTCCGCCGGGCAATTGGGTTCCGGGGCAGTACCCTTATGGTGCTCCTCCACCCCTTCCGGGTGCTCCCTTTGTTGAGCATCAGAAGACGGTTACTATCAAGAACGATGTGAATATCAAGAAGGACTCTTTGAGGGTTGAGCCGGATGAGGAGAATCCCGGCAAGTTTGTTGTTGCCTTCACTTTTGATGCCGCCGCACCCGGAAGCATTACCGTCATGTTTTTTACAAAAGAAGATGCAGACTTTAACTTGATAGCAACAAAGGAAAGCTTGCTTAAACCTGTTAAAGTGCCGTTTGACAAAGGTCTTGGTCAAAAGTTTAGACAACCTTGTGGAACTGGGATCGACTTTTCAATGTTTGAGGAGATAGGGTTGACAAAAGAGGGTGACATAGAAGTTTATCCTCTTGTGGTGAAGGCTGAAGCACATCTCGTGAATGAAGGTGAACGTGAATCAGAGGGAAATTCCACCGGGAACTCTCAGATCACACAGGCAGTGTTTGAAAAGAAGGAGAATGGTGAGTACAAAGTGCGGGTGGTGAAACAGATACTATGGGTGGATAATATGAGGTATGAGCTGCAGGAGATCTATGGTATTGGGAATGCAGTTGAAGGTGATCAAAATGATAATGAAGCTGGAAAAGACTGTATAATTTGCTTGTCAGAACCTCCAGATACAACTGTGCTCCCTTGCCGGCACATGTGCATGTGCAGTGGTTGTGCCAAGGTTCTGAGGTTCCAGACAAATAGATGCCCCGTCTGTAGGCAACCAGTTGAACGGCTCTTGGAAATCAAGGTGAATAATGGAGCTGATGGTGCTTTAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

376

Amino Acids

41.31

Weight (kDa)

6.02

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNF157-like_N	PF26192	138 - 294	9.7e-67	RNF157-like N-terminal domain
zf-C3HC4_3	PF13920	315 - 361	2.3e-15	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	316 - 356	8.4e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40470 FvH4_3g40470 FvH4_3g40470
malus_domestica	MD03G1051900.v1.1 MD11G1054000.v1.1
prunus_persica	Prupe.6G041400_v2.0.a1
pyrus_communis	pycom03g04130 pycom11g04360
rosa_chinensis	RchiOBHm_Chr5g0073151
rosa_laevigata	RLG00000036369
rosa_multiflora	Rmu_sc0021999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008030
rosa_rugosa	Rorug05G0421500
rosa_samantha	Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300
rosa_wichuraiana	Rw5G044460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	36, 113
AccII	CGCG	2 cut(s)	272, 282
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	1 cut(s)	744
AfaI	GTAC	5 cut(s)	173, 236, 275, 335, 827
AfiI	CCNNNNNNNGG	8 cut(s)	30, 89, 164, 266, 286, 311, 362, 1065
AflIII	ACRYGT	1 cut(s)	1002
AgsI	TTSAA	4 cut(s)	657, 806, 914, 1079
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	4 cut(s)	573, 880, 938, 1112
AluI	AGCT	4 cut(s)	573, 880, 938, 1112
Alw21I	GWGCWC	3 cut(s)	349, 370, 990
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	4 cut(s)	41, 166, 288, 298
ApaI	GGGCCC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	880
ApoI	RAATTY	1 cut(s)	766
AspLEI	GCGC	2 cut(s)	23, 272
AspS9I	GGNCC	4 cut(s)	203, 288, 298, 299
AsuC2I	CCSGG	7 cut(s)	267, 312, 327, 363, 462, 504, 775
AsuHPI	GGTGA	8 cut(s)	111, 701, 727, 758, 833, 853, 929, 1111
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	969, 1002
BanI	GGYRCC	2 cut(s)	36, 113
BanII	GRGCYC	1 cut(s)	302
BauI	CACGAG	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	3 cut(s)	349, 370, 990
BbvI	GCAGC	1 cut(s)	867
BccI	CCATC	1 cut(s)	1109
BceAI	ACGGC	2 cut(s)	580, 1097
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	7 cut(s)	267, 312, 327, 363, 462, 504, 775
BfmI	CTRYAG	2 cut(s)	881, 1063
BfoI	RGCGCY	1 cut(s)	24
BglII	AGATCT	1 cut(s)	888
BisI	GCNGC	6 cut(s)	44, 257, 283, 495, 498, 881
BlsI	GCNGC	6 cut(s)	45, 258, 284, 496, 499, 882
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	8 cut(s)	165, 267, 312, 327, 363, 462, 504, 775
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	4 cut(s)	203, 288, 298, 299
BmiI	GGNNCC	6 cut(s)	38, 115, 289, 300, 324, 1040
BmrFI	CCNGG	8 cut(s)	165, 267, 312, 327, 363, 462, 504, 775
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	4 cut(s)	391, 481, 529, 1043
BmuI	ACTGGG	1 cut(s)	651
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	957
BpuMI	CCSGG	7 cut(s)	267, 312, 327, 363, 462, 504, 775
BsaJI	CCNNGG	3 cut(s)	280, 326, 1026
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 659, 689
Bsc4I	CCNNNNNNNGG	8 cut(s)	30, 89, 164, 266, 286, 311, 362, 1065
Bse118I	RCCGGY	3 cut(s)	23, 39, 996
Bse1I	ACTGG	4 cut(s)	169, 232, 646, 1073
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	3 cut(s)	280, 326, 1026
BseGI	GGATG	2 cut(s)	73, 454
BseLI	CCNNNNNNNGG	8 cut(s)	30, 89, 164, 266, 286, 311, 362, 1065
BseMII	CTCAG	2 cut(s)	797, 1025
BseNI	ACTGG	4 cut(s)	169, 232, 646, 1073
BseRI	GAGGAG	4 cut(s)	294, 339, 467, 680
BseSI	GKGCMC	1 cut(s)	302
BseX3I	CGGCCG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	867
BsgI	GTGCAG	1 cut(s)	1033
Bsh1236I	CGCG	2 cut(s)	272, 282
Bsh1285I	CGRYCG	2 cut(s)	28, 44
BshFI	GGCC	4 cut(s)	43, 168, 290, 300
BshNI	GGYRCC	2 cut(s)	36, 113
BsiEI	CGRYCG	2 cut(s)	28, 44
BsiHKAI	GWGCWC	3 cut(s)	349, 370, 990
BslI	CCNNNNNNNGG	8 cut(s)	30, 89, 164, 266, 286, 311, 362, 1065
BsmI	GAATGC	2 cut(s)	242, 910
BsnI	GGCC	4 cut(s)	43, 168, 290, 300
Bsp120I	GGGCCC	1 cut(s)	298
Bsp1286I	GDGCHC	4 cut(s)	302, 349, 370, 990
Bsp143I	GATC	4 cut(s)	645, 786, 888, 919
BspANI	GGCC	4 cut(s)	43, 168, 290, 300
BspCNI	CTCAG	2 cut(s)	796, 1026
BspFNI	CGCG	2 cut(s)	272, 282
BspLI	GGNNCC	6 cut(s)	38, 115, 289, 300, 324, 1040
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	1 cut(s)	653
BspT107I	GGYRCC	2 cut(s)	36, 113
BsrFI	RCCGGY	3 cut(s)	23, 39, 996
BsrI	ACTGG	4 cut(s)	169, 232, 646, 1073
BssAI	RCCGGY	3 cut(s)	23, 39, 996
BssECI	CCNNGG	3 cut(s)	280, 326, 1026
BssMI	GATC	4 cut(s)	645, 786, 888, 919
BssSI	CACGAG	1 cut(s)	734
BssT1I	CCWWGG	1 cut(s)	1026
Bst2BI	CACGAG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	4 cut(s)	394, 517, 950, 985
BstC8I	GCNNGC	2 cut(s)	575, 998
BstDEI	CTNAG	2 cut(s)	783, 1034
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	73, 454
BstFNI	CGCG	2 cut(s)	272, 282
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 272
BstKTI	GATC	4 cut(s)	648, 789, 891, 922
BstMBI	GATC	4 cut(s)	645, 786, 888, 919
BstMCI	CGRYCG	2 cut(s)	28, 44
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 43, 49, 1118
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	2 cut(s)	1006, 1012
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	8 cut(s)	163, 265, 310, 325, 361, 460, 502, 773
BstSFI	CTRYAG	2 cut(s)	881, 1063
BstSLI	GKGCMC	1 cut(s)	302
BstUI	CGCG	2 cut(s)	272, 282
BstV1I	GCAGC	1 cut(s)	867
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	888
BstYI	RGATCY	1 cut(s)	888
BstZI	CGGCCG	1 cut(s)	41
BsuRI	GGCC	4 cut(s)	43, 168, 290, 300
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	73, 454
BtsI	GCAGTG	2 cut(s)	804, 1021
BtsIMutI	CAGTG	2 cut(s)	804, 1021
Cac8I	GCNNGC	2 cut(s)	575, 998
CfoI	GCGC	2 cut(s)	23, 272
Cfr10I	RCCGGY	3 cut(s)	23, 39, 996
Cfr13I	GGNCC	4 cut(s)	203, 288, 298, 299
Cfr42I	CCGCGG	1 cut(s)	283
Csp6I	GTAC	5 cut(s)	172, 235, 274, 334, 826
CviAII	CATG	4 cut(s)	295, 520, 1003, 1009
CviQI	GTAC	5 cut(s)	172, 235, 274, 334, 826
DdeI	CTNAG	2 cut(s)	783, 1034
DpnI	GATC	4 cut(s)	647, 788, 890, 921
DpnII	GATC	4 cut(s)	645, 786, 888, 919
EaeI	YGGCCR	1 cut(s)	41
EagI	CGGCCG	1 cut(s)	41
EciI	GGCGGA	2 cut(s)	39, 297
EclXI	CGGCCG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	1026
Eco24I	GRGCYC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	203
Eco52I	CGGCCG	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	744
EcoO109I	RGGNCCY	2 cut(s)	288, 299
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	1026
FaeI	CATG	4 cut(s)	298, 523, 1006, 1012
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	4 cut(s)	294, 519, 1002, 1008
FauI	CCCGC	3 cut(s)	138, 278, 828
FbaI	TGATCA	1 cut(s)	919
Fnu4HI	GCNGC	6 cut(s)	44, 257, 283, 495, 498, 881
FokI	GGATG	2 cut(s)	60, 461
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	6 cut(s)	44, 257, 283, 495, 498, 881
GlaI	GCGC	2 cut(s)	22, 271
GluI	GCNGC	6 cut(s)	44, 257, 283, 495, 498, 881
GsuI	CTGGAG	1 cut(s)	957
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	4 cut(s)	43, 168, 290, 300
HhaI	GCGC	2 cut(s)	23, 272
Hin1II	CATG	4 cut(s)	298, 523, 1006, 1012
Hin6I	GCGC	2 cut(s)	21, 270
HinP1I	GCGC	2 cut(s)	21, 270
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	6 cut(s)	6, 58, 64, 428, 457, 755
HphI	GGTGA	8 cut(s)	111, 701, 727, 758, 833, 853, 929, 1111
Hpy166II	GTNNAC	2 cut(s)	678, 749
Hpy188I	TCNGA	8 cut(s)	11, 57, 63, 387, 760, 786, 967, 1035
Hpy188III	TCNNGA	5 cut(s)	403, 421, 736, 974, 1042
Hpy8I	GTNNAC	2 cut(s)	678, 749
HpyAV	CCTTC	8 cut(s)	301, 368, 418, 490, 712, 737, 805, 908
HpyCH4III	ACNGT	4 cut(s)	394, 517, 950, 985
HpyCH4IV	ACGT	1 cut(s)	751
HpyCH4V	TGCA	6 cut(s)	242, 542, 883, 908, 1008, 1014
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 43, 49, 1118
HpyF3I	CTNAG	2 cut(s)	783, 1034
HpySE526I	ACGT	1 cut(s)	751
Hsp92II	CATG	4 cut(s)	298, 523, 1006, 1012
HspAI	GCGC	2 cut(s)	21, 270
KroI	GCCGGC	1 cut(s)	996
KroNI	GCCGGC	1 cut(s)	998
Ksp22I	TGATCA	1 cut(s)	919
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	645, 786, 888, 919
LmnI	GCTCC	4 cut(s)	352, 373, 993, 1109
Lsp1109I	GCAGC	1 cut(s)	867
LweI	GCATC	4 cut(s)	391, 481, 529, 1043
MaeII	ACGT	1 cut(s)	751
MaeIII	GTNAC	3 cut(s)	104, 394, 689
MalI	GATC	4 cut(s)	647, 788, 890, 921
MboI	GATC	4 cut(s)	645, 786, 888, 919
MboII	GAAGA	2 cut(s)	400, 548
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	1 cut(s)	888
MhlI	GDGCHC	4 cut(s)	302, 349, 370, 990
MluCI	AATT	4 cut(s)	191, 316, 766, 954
MlyI	GAGTC	3 cut(s)	52, 58, 422
MmeI	TCCRAC	2 cut(s)	80, 86
MroNI	GCCGGC	1 cut(s)	996
MseI	TTAA	3 cut(s)	549, 579, 588
MslI	CAYNNNNRTG	1 cut(s)	1007
MspA1I	CMGCKG	1 cut(s)	282
MspR9I	CCNGG	8 cut(s)	165, 267, 312, 327, 363, 462, 504, 775
MunI	CAATTG	1 cut(s)	316
Mva1269I	GAATGC	2 cut(s)	242, 910
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	2 cut(s)	272, 282
MwoI	GCNNNNNNNGC	4 cut(s)	27, 43, 49, 1118
NaeI	GCCGGC	1 cut(s)	998
NciI	CCSGG	7 cut(s)	267, 312, 327, 363, 462, 504, 775
NdeII	GATC	4 cut(s)	645, 786, 888, 919
NgoMIV	GCCGGC	1 cut(s)	996
NlaIII	CATG	4 cut(s)	298, 523, 1006, 1012
NlaIV	GGNNCC	6 cut(s)	38, 115, 289, 300, 324, 1040
NmuCI	GTSAC	1 cut(s)	689
NspI	RCATGY	2 cut(s)	1006, 1012
PciI	ACATGT	1 cut(s)	1002
PctI	GAATGC	2 cut(s)	242, 910
PdiI	GCCGGC	1 cut(s)	998
PfeI	GAWTC	3 cut(s)	6, 457, 755
PkrI	GCNGC	6 cut(s)	45, 258, 284, 496, 499, 882
PleI	GAGTC	3 cut(s)	52, 58, 422
PpsI	GAGTC	3 cut(s)	52, 58, 422
PscI	ACATGT	1 cut(s)	1002
PshAI	GACNNNNGTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	6 cut(s)	38, 115, 289, 300, 324, 1040
PspOMI	GGGCCC	1 cut(s)	298
PspPI	GGNCC	4 cut(s)	203, 288, 298, 299
PstI	CTGCAG	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	888
RsaI	GTAC	5 cut(s)	173, 236, 275, 335, 827
RsaNI	GTAC	5 cut(s)	172, 235, 274, 334, 826
RseI	CAYNNNNRTG	1 cut(s)	1007
SacII	CCGCGG	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	549, 579, 588
SatI	GCNGC	6 cut(s)	44, 257, 283, 495, 498, 881
Sau3AI	GATC	4 cut(s)	645, 786, 888, 919
Sau96I	GGNCC	4 cut(s)	203, 288, 298, 299
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	3 cut(s)	52, 58, 422
ScrFI	CCNGG	8 cut(s)	165, 267, 312, 327, 363, 462, 504, 775
SduI	GDGCHC	4 cut(s)	302, 349, 370, 990
SfaNI	GCATC	4 cut(s)	391, 481, 529, 1043
SfcI	CTRYAG	2 cut(s)	881, 1063
Sfr303I	CCGCGG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	1007
Sse9I	AATT	4 cut(s)	191, 316, 766, 954
StyD4I	CCNGG	8 cut(s)	163, 265, 310, 325, 361, 460, 502, 773
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	4 cut(s)	394, 517, 950, 985
TaiI	ACGT	1 cut(s)	754
TaqI	TCGA	1 cut(s)	648
TasI	AATT	4 cut(s)	191, 316, 766, 954
TatI	WGTACW	2 cut(s)	234, 825
TauI	GCSGC	5 cut(s)	46, 259, 285, 497, 500
TfiI	GAWTC	3 cut(s)	6, 457, 755
Tru1I	TTAA	3 cut(s)	549, 579, 588
Tru9I	TTAA	3 cut(s)	549, 579, 588
TscAI	CASTG	2 cut(s)	804, 1021
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	1 cut(s)	880
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	3 cut(s)	283, 756, 948
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	804, 1021
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	766
XceI	RCATGY	2 cut(s)	1006, 1012
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.