transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40470 FvH4_3g40470 FvH4_3g40470 |
| malus_domestica | MD03G1051900.v1.1 MD11G1054000.v1.1 |
| prunus_persica | Prupe.6G041400_v2.0.a1 |
| pyrus_communis | pycom03g04130 pycom11g04360 |
| rosa_chinensis | RchiOBHm_Chr5g0073151 |
| rosa_laevigata | RLG00000036369 |
| rosa_multiflora | Rmu_sc0021999.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00008030 |
| rosa_rugosa | Rorug05G0421500 |
| rosa_samantha | Rh5AG478500 Rh5BG499200 Rh5CG522400 Rh5DG511300 |
| rosa_wichuraiana | Rw5G044460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1203 |
| Acc36I | ACCTGC | 1 cut(s) | 1207 |
| AccB1I | GGYRCC | 2 cut(s) | 518, 599 |
| AccBSI | CCGCTC | 1 cut(s) | 236 |
| AccI | GTMKAC | 1 cut(s) | 728 |
| AccII | CGCG | 5 cut(s) | 156, 231, 688, 816, 1166 |
| AclWI | GGATC | 8 cut(s) | 498, 500, 519, 532, 540, 553, 564, 800 |
| AcoI | YGGCCR | 1 cut(s) | 680 |
| AcuI | CTGAAG | 2 cut(s) | 1079, 1395 |
| AcyI | GRCGYC | 2 cut(s) | 519, 600 |
| AfaI | GTAC | 1 cut(s) | 1408 |
| AfeI | AGCGCT | 1 cut(s) | 253 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 372, 396, 445, 457, 515, 795 |
| AflII | CTTAAG | 1 cut(s) | 995 |
| AgeI | ACCGGT | 1 cut(s) | 392 |
| AgsI | TTSAA | 4 cut(s) | 514, 914, 1123, 1234 |
| AjiI | CACGTC | 2 cut(s) | 261, 726 |
| AjnI | CCWGG | 2 cut(s) | 591, 1192 |
| AluBI | AGCT | 9 cut(s) | 465, 589, 705, 784, 793, 994, 1000, 1013, 1028 |
| AluI | AGCT | 9 cut(s) | 465, 589, 705, 784, 793, 994, 1000, 1013, 1028 |
| Alw21I | GWGCWC | 1 cut(s) | 980 |
| Alw26I | GTCTC | 1 cut(s) | 671 |
| AlwI | GGATC | 8 cut(s) | 498, 500, 519, 532, 540, 553, 564, 800 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1199 |
| Aor51HI | AGCGCT | 1 cut(s) | 253 |
| ApaI | GGGCCC | 3 cut(s) | 451, 638, 648 |
| ApeKI | GCWGC | 8 cut(s) | 58, 161, 170, 254, 312, 386, 420, 848 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 827, 859 |
| AsiGI | ACCGGT | 1 cut(s) | 392 |
| AspLEI | GCGC | 7 cut(s) | 233, 254, 521, 602, 816, 818, 897 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 1199 |
| AvaII | GGWCC | 4 cut(s) | 375, 399, 481, 1196 |
| BaeGI | GKGCMC | 3 cut(s) | 451, 638, 648 |
| BamHI | GGATCC | 2 cut(s) | 524, 545 |
| BanI | GGYRCC | 2 cut(s) | 518, 599 |
| BanII | GRGCYC | 3 cut(s) | 451, 638, 648 |
| BauI | CACGAG | 2 cut(s) | 427, 1364 |
| Bbv12I | GWGCWC | 1 cut(s) | 980 |
| BbvI | GCAGC | 8 cut(s) | 70, 148, 157, 241, 324, 373, 432, 835 |
| BccI | CCATC | 2 cut(s) | 218, 1272 |
| BceAI | ACGGC | 5 cut(s) | 532, 667, 676, 1204, 1327 |
| BciT130I | CCWGG | 2 cut(s) | 593, 1194 |
| BcoDI | GTCTC | 1 cut(s) | 671 |
| BfaI | CTAG | 1 cut(s) | 1248 |
| BfoI | RGCGCY | 3 cut(s) | 255, 522, 603 |
| BfrI | CTTAAG | 1 cut(s) | 995 |
| BfuAI | ACCTGC | 1 cut(s) | 1207 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 688, 764 |
| Bme1390I | CCNGG | 2 cut(s) | 593, 1194 |
| Bme18I | GGWCC | 4 cut(s) | 375, 399, 481, 1196 |
| BmgBI | CACGTC | 2 cut(s) | 261, 726 |
| BmrFI | CCNGG | 2 cut(s) | 593, 1194 |
| BmrI | ACTGGG | 3 cut(s) | 87, 1237, 1251 |
| BmsI | GCATC | 2 cut(s) | 184, 703 |
| BmuI | ACTGGG | 3 cut(s) | 87, 1237, 1251 |
| BpmI | CTGGAG | 1 cut(s) | 575 |
| BpuEI | CTTGAG | 2 cut(s) | 911, 1064 |
| BsaHI | GRCGYC | 2 cut(s) | 519, 600 |
| BsaI | GGTCTC | 1 cut(s) | 671 |
| BsaJI | CCNNGG | 1 cut(s) | 549 |
| BsaWI | WCCGGW | 1 cut(s) | 392 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 54, 84 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 372, 396, 445, 457, 515, 795 |
| Bse118I | RCCGGY | 2 cut(s) | 392, 596 |
| Bse1I | ACTGG | 3 cut(s) | 93, 1243, 1257 |
| Bse3DI | GCAATG | 2 cut(s) | 135, 774 |
| BseBI | CCWGG | 2 cut(s) | 593, 1194 |
| BseDI | CCNNGG | 1 cut(s) | 549 |
| BseGI | GGATG | 2 cut(s) | 64, 718 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 372, 396, 445, 457, 515, 795 |
| BseMI | GCAATG | 2 cut(s) | 135, 774 |
| BseMII | CTCAG | 2 cut(s) | 965, 1043 |
| BseNI | ACTGG | 3 cut(s) | 93, 1243, 1257 |
| BsePI | GCGCGC | 1 cut(s) | 814 |
| BseRI | GAGGAG | 8 cut(s) | 205, 208, 256, 259, 262, 265, 268, 566 |
| BseSI | GKGCMC | 3 cut(s) | 451, 638, 648 |
| BseX3I | CGGCCG | 1 cut(s) | 680 |
| BseXI | GCAGC | 8 cut(s) | 70, 148, 157, 241, 324, 373, 432, 835 |
| BseYI | CCCAGC | 1 cut(s) | 307 |
| Bsh1236I | CGCG | 5 cut(s) | 156, 231, 688, 816, 1166 |
| Bsh1285I | CGRYCG | 1 cut(s) | 683 |
| BshNI | GGYRCC | 2 cut(s) | 518, 599 |
| BshTI | ACCGGT | 1 cut(s) | 392 |
| BsiEI | CGRYCG | 1 cut(s) | 683 |
| BsiHKAI | GWGCWC | 1 cut(s) | 980 |
| BsiSI | CCGG | 5 cut(s) | 393, 476, 498, 522, 597 |
| BslFI | GGGAC | 3 cut(s) | 81, 412, 974 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 372, 396, 445, 457, 515, 795 |
| BsmAI | GTCTC | 1 cut(s) | 671 |
| BsmFI | GGGAC | 3 cut(s) | 81, 412, 974 |
| BsmI | GAATGC | 2 cut(s) | 211, 1137 |
| Bso31I | GGTCTC | 1 cut(s) | 671 |
| Bsp120I | GGGCCC | 3 cut(s) | 447, 634, 644 |
| Bsp1286I | GDGCHC | 4 cut(s) | 451, 638, 648, 980 |
| Bsp143I | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| BspCNI | CTCAG | 2 cut(s) | 966, 1042 |
| BspFNI | CGCG | 5 cut(s) | 156, 231, 688, 816, 1166 |
| BspMI | ACCTGC | 1 cut(s) | 1207 |
| BspPI | GGATC | 8 cut(s) | 498, 500, 519, 532, 540, 553, 564, 800 |
| BspT107I | GGYRCC | 2 cut(s) | 518, 599 |
| BspTI | CTTAAG | 1 cut(s) | 995 |
| BspTNI | GGTCTC | 1 cut(s) | 671 |
| BsrBI | CCGCTC | 1 cut(s) | 236 |
| BsrDI | GCAATG | 2 cut(s) | 135, 774 |
| BsrFI | RCCGGY | 2 cut(s) | 392, 596 |
| BsrI | ACTGG | 3 cut(s) | 93, 1243, 1257 |
| BssAI | RCCGGY | 2 cut(s) | 392, 596 |
| BssECI | CCNNGG | 1 cut(s) | 549 |
| BssHII | GCGCGC | 1 cut(s) | 814 |
| BssMI | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| BssNI | GRCGYC | 2 cut(s) | 519, 600 |
| BssSI | CACGAG | 2 cut(s) | 427, 1364 |
| Bst2BI | CACGAG | 2 cut(s) | 427, 1364 |
| Bst2UI | CCWGG | 2 cut(s) | 593, 1194 |
| Bst4CI | ACNGT | 1 cut(s) | 701 |
| Bst6I | CTCTTC | 2 cut(s) | 286, 566 |
| BstACI | GRCGYC | 2 cut(s) | 519, 600 |
| BstAFI | CTTAAG | 1 cut(s) | 995 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1141 |
| BstC8I | GCNNGC | 5 cut(s) | 598, 786, 816, 853, 874 |
| BstDEI | CTNAG | 2 cut(s) | 974, 1029 |
| BstEII | GGTNACC | 1 cut(s) | 1205 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 370 |
| BstF5I | GGATG | 2 cut(s) | 64, 718 |
| BstFNI | CGCG | 5 cut(s) | 156, 231, 688, 816, 1166 |
| BstH2I | RGCGCY | 3 cut(s) | 255, 522, 603 |
| BstHHI | GCGC | 7 cut(s) | 233, 254, 521, 602, 816, 818, 897 |
| BstKTI | GATC | 6 cut(s) | 493, 508, 527, 548, 559, 808 |
| BstMAI | GTCTC | 1 cut(s) | 671 |
| BstMBI | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| BstMCI | CGRYCG | 1 cut(s) | 683 |
| BstNI | CCWGG | 2 cut(s) | 593, 1194 |
| BstNSI | RCATGY | 1 cut(s) | 1219 |
| BstPI | GGTNACC | 1 cut(s) | 1205 |
| BstSCI | CCNGG | 2 cut(s) | 591, 1192 |
| BstSLI | GKGCMC | 3 cut(s) | 451, 638, 648 |
| BstUI | CGCG | 5 cut(s) | 156, 231, 688, 816, 1166 |
| BstV1I | GCAGC | 8 cut(s) | 70, 148, 157, 241, 324, 373, 432, 835 |
| BstX2I | RGATCY | 4 cut(s) | 490, 524, 545, 556 |
| BstYI | RGATCY | 4 cut(s) | 490, 524, 545, 556 |
| BstZI | CGGCCG | 1 cut(s) | 680 |
| BtrI | CACGTC | 2 cut(s) | 261, 726 |
| BtsCI | GGATG | 2 cut(s) | 64, 718 |
| BtsIMutI | CAGTG | 2 cut(s) | 978, 1055 |
| BveI | ACCTGC | 1 cut(s) | 1207 |
| Cac8I | GCNNGC | 5 cut(s) | 598, 786, 816, 853, 874 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1199 |
| CfoI | GCGC | 7 cut(s) | 233, 254, 521, 602, 816, 818, 897 |
| Cfr10I | RCCGGY | 2 cut(s) | 392, 596 |
| CseI | GACGC | 2 cut(s) | 167, 705 |
| Csp6I | GTAC | 1 cut(s) | 1407 |
| CspAI | ACCGGT | 1 cut(s) | 392 |
| CviAII | CATG | 3 cut(s) | 487, 751, 1216 |
| CviQI | GTAC | 1 cut(s) | 1407 |
| DdeI | CTNAG | 2 cut(s) | 974, 1029 |
| DinI | GGCGCC | 2 cut(s) | 520, 601 |
| DpnI | GATC | 6 cut(s) | 492, 507, 526, 547, 558, 807 |
| DpnII | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1203 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1203 |
| EaeI | YGGCCR | 1 cut(s) | 680 |
| EagI | CGGCCG | 1 cut(s) | 680 |
| Eam1104I | CTCTTC | 2 cut(s) | 286, 566 |
| EarI | CTCTTC | 2 cut(s) | 286, 566 |
| EciI | GGCGGA | 1 cut(s) | 367 |
| EclXI | CGGCCG | 1 cut(s) | 680 |
| Eco24I | GRGCYC | 3 cut(s) | 451, 638, 648 |
| Eco31I | GGTCTC | 1 cut(s) | 671 |
| Eco47I | GGWCC | 4 cut(s) | 375, 399, 481, 1196 |
| Eco47III | AGCGCT | 1 cut(s) | 253 |
| Eco52I | CGGCCG | 1 cut(s) | 680 |
| Eco57I | CTGAAG | 2 cut(s) | 1079, 1395 |
| Eco91I | GGTNACC | 1 cut(s) | 1205 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 370 |
| EcoO109I | RGGNCCY | 7 cut(s) | 399, 447, 481, 634, 635, 1196, 1379 |
| EcoO65I | GGTNACC | 1 cut(s) | 1205 |
| EcoRII | CCWGG | 2 cut(s) | 591, 1192 |
| EcoT38I | GRGCYC | 3 cut(s) | 451, 638, 648 |
| EgeI | GGCGCC | 2 cut(s) | 520, 601 |
| EheI | GGCGCC | 2 cut(s) | 520, 601 |
| FaeI | CATG | 3 cut(s) | 490, 754, 1219 |
| FaqI | GGGAC | 3 cut(s) | 81, 412, 974 |
| FatI | CATG | 3 cut(s) | 486, 750, 1215 |
| FauI | CCCGC | 2 cut(s) | 161, 881 |
| FblI | GTMKAC | 1 cut(s) | 728 |
| FokI | GGATG | 2 cut(s) | 51, 725 |
| FriOI | GRGCYC | 3 cut(s) | 451, 638, 648 |
| FspBI | CTAG | 1 cut(s) | 1248 |
| GlaI | GCGC | 7 cut(s) | 232, 253, 520, 601, 815, 817, 896 |
| GsaI | CCCAGC | 1 cut(s) | 311 |
| GsuI | CTGGAG | 1 cut(s) | 575 |
| HaeII | RGCGCY | 3 cut(s) | 255, 522, 603 |
| HapII | CCGG | 5 cut(s) | 393, 476, 498, 522, 597 |
| HgaI | GACGC | 2 cut(s) | 167, 705 |
| HhaI | GCGC | 7 cut(s) | 233, 254, 521, 602, 816, 818, 897 |
| Hin1I | GRCGYC | 2 cut(s) | 519, 600 |
| Hin1II | CATG | 3 cut(s) | 490, 754, 1219 |
| Hin6I | GCGC | 7 cut(s) | 231, 252, 519, 600, 814, 816, 895 |
| HinP1I | GCGC | 7 cut(s) | 231, 252, 519, 600, 814, 816, 895 |
| HincII | GTYRAC | 1 cut(s) | 729 |
| HindII | GTYRAC | 1 cut(s) | 729 |
| HindIII | AAGCTT | 1 cut(s) | 998 |
| HinfI | GANTC | 4 cut(s) | 226, 799, 1040, 1115 |
| HpaII | CCGG | 5 cut(s) | 393, 476, 498, 522, 597 |
| HphI | GGTGA | 2 cut(s) | 235, 1199 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 723, 729 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 803, 955, 1366 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 723, 729 |
| Hpy99I | CGWCG | 6 cut(s) | 161, 539, 688, 721, 730, 733 |
| HpyAV | CCTTC | 9 cut(s) | 128, 298, 376, 520, 757, 862, 920, 1057, 1370 |
| HpyCH4III | ACNGT | 1 cut(s) | 701 |
| HpyCH4IV | ACGT | 2 cut(s) | 260, 725 |
| HpyCH4V | TGCA | 4 cut(s) | 58, 1135, 1306, 1394 |
| HpyF3I | CTNAG | 2 cut(s) | 974, 1029 |
| HpySE526I | ACGT | 2 cut(s) | 260, 725 |
| Hsp92I | GRCGYC | 2 cut(s) | 519, 600 |
| Hsp92II | CATG | 3 cut(s) | 490, 754, 1219 |
| HspAI | GCGC | 7 cut(s) | 231, 252, 519, 600, 814, 816, 895 |
| KasI | GGCGCC | 2 cut(s) | 518, 599 |
| KflI | GGGWCCC | 1 cut(s) | 399 |
| KroI | GCCGGC | 1 cut(s) | 596 |
| KroNI | GCCGGC | 1 cut(s) | 598 |
| Kzo9I | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| LmnI | GCTCC | 2 cut(s) | 241, 594 |
| Lsp1109I | GCAGC | 8 cut(s) | 70, 148, 157, 241, 324, 373, 432, 835 |
| LweI | GCATC | 2 cut(s) | 184, 703 |
| MaeI | CTAG | 1 cut(s) | 1248 |
| MaeII | ACGT | 2 cut(s) | 260, 725 |
| MaeIII | GTNAC | 4 cut(s) | 1005, 1205, 1259, 1326 |
| MalI | GATC | 6 cut(s) | 492, 507, 526, 547, 558, 807 |
| MbiI | CCGCTC | 1 cut(s) | 236 |
| MboI | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| MboII | GAAGA | 8 cut(s) | 113, 116, 174, 177, 273, 553, 1072, 1259 |
| MflI | RGATCY | 4 cut(s) | 490, 524, 545, 556 |
| MhlI | GDGCHC | 4 cut(s) | 451, 638, 648, 980 |
| MluCI | AATT | 3 cut(s) | 76, 112, 1176 |
| Mly113I | GGCGCC | 2 cut(s) | 519, 600 |
| MroNI | GCCGGC | 1 cut(s) | 596 |
| MseI | TTAA | 2 cut(s) | 996, 1417 |
| MspA1I | CMGCKG | 3 cut(s) | 386, 423, 605 |
| MspCI | CTTAAG | 1 cut(s) | 995 |
| MspI | CCGG | 5 cut(s) | 393, 476, 498, 522, 597 |
| MspR9I | CCNGG | 2 cut(s) | 593, 1194 |
| Mva1269I | GAATGC | 2 cut(s) | 211, 1137 |
| MvaI | CCWGG | 2 cut(s) | 593, 1194 |
| MvnI | CGCG | 5 cut(s) | 156, 231, 688, 816, 1166 |
| NaeI | GCCGGC | 1 cut(s) | 598 |
| NarI | GGCGCC | 2 cut(s) | 519, 600 |
| NdeII | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| NgoMIV | GCCGGC | 1 cut(s) | 596 |
| NlaIII | CATG | 3 cut(s) | 490, 754, 1219 |
| NmeAIII | GCCGAG | 1 cut(s) | 814 |
| NmuCI | GTSAC | 1 cut(s) | 1205 |
| NspI | RCATGY | 1 cut(s) | 1219 |
| PauI | GCGCGC | 1 cut(s) | 814 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 713, 725 |
| PctI | GAATGC | 2 cut(s) | 211, 1137 |
| PdiI | GCCGGC | 1 cut(s) | 598 |
| PfeI | GAWTC | 4 cut(s) | 226, 799, 1040, 1115 |
| PinAI | ACCGGT | 1 cut(s) | 392 |
| PluTI | GGCGCC | 2 cut(s) | 522, 603 |
| PpuMI | RGGWCCY | 3 cut(s) | 399, 481, 1196 |
| Psp5II | RGGWCCY | 3 cut(s) | 399, 481, 1196 |
| Psp6I | CCWGG | 2 cut(s) | 591, 1192 |
| PspEI | GGTNACC | 1 cut(s) | 1205 |
| PspFI | CCCAGC | 1 cut(s) | 307 |
| PspGI | CCWGG | 2 cut(s) | 591, 1192 |
| PspOMI | GGGCCC | 3 cut(s) | 447, 634, 644 |
| PspPPI | RGGWCCY | 3 cut(s) | 399, 481, 1196 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1199 |
| PsuI | RGATCY | 4 cut(s) | 490, 524, 545, 556 |
| PteI | GCGCGC | 1 cut(s) | 814 |
| RsaI | GTAC | 1 cut(s) | 1408 |
| RsaNI | GTAC | 1 cut(s) | 1407 |
| SalI | GTCGAC | 1 cut(s) | 727 |
| SaqAI | TTAA | 2 cut(s) | 996, 1417 |
| Sau3AI | GATC | 6 cut(s) | 490, 505, 524, 545, 556, 805 |
| ScrFI | CCNGG | 2 cut(s) | 593, 1194 |
| SduI | GDGCHC | 4 cut(s) | 451, 638, 648, 980 |
| SfaNI | GCATC | 2 cut(s) | 184, 703 |
| SfoI | GGCGCC | 2 cut(s) | 520, 601 |
| SgrAI | CRCCGGYG | 1 cut(s) | 392 |
| SgrDI | CGTCGACG | 1 cut(s) | 727 |
| SinI | GGWCC | 4 cut(s) | 375, 399, 481, 1196 |
| SmlI | CTYRAG | 3 cut(s) | 890, 995, 1079 |
| SmoI | CTYRAG | 3 cut(s) | 890, 995, 1079 |
| Sse9I | AATT | 3 cut(s) | 76, 112, 1176 |
| SspDI | GGCGCC | 2 cut(s) | 518, 599 |
| SspMI | CTAG | 1 cut(s) | 1248 |
| StyD4I | CCNGG | 2 cut(s) | 591, 1192 |
| TaaI | ACNGT | 1 cut(s) | 701 |
| TaiI | ACGT | 2 cut(s) | 263, 728 |
| TaqI | TCGA | 3 cut(s) | 576, 582, 728 |
| TasI | AATT | 3 cut(s) | 76, 112, 1176 |
| TauI | GCSGC | 8 cut(s) | 236, 383, 386, 426, 605, 682, 691, 775 |
| TfiI | GAWTC | 4 cut(s) | 226, 799, 1040, 1115 |
| Tru1I | TTAA | 2 cut(s) | 996, 1417 |
| Tru9I | TTAA | 2 cut(s) | 996, 1417 |
| TscAI | CASTG | 2 cut(s) | 985, 1062 |
| TseFI | GTSAC | 1 cut(s) | 1205 |
| TseI | GCWGC | 8 cut(s) | 58, 161, 170, 254, 312, 386, 420, 848 |
| Tsp45I | GTSAC | 1 cut(s) | 1205 |
| TspDTI | ATGAA | 2 cut(s) | 358, 1259 |
| TspRI | CASTG | 2 cut(s) | 985, 1062 |
| Vha464I | CTTAAG | 1 cut(s) | 995 |
| VpaK11BI | GGWCC | 4 cut(s) | 375, 399, 481, 1196 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 370 |
| XceI | RCATGY | 1 cut(s) | 1219 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 538 |
| XmiI | GTMKAC | 1 cut(s) | 728 |
| XspI | CTAG | 1 cut(s) | 1248 |