Rw5G044460
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
78151516 .. 78154359
2844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044460.1

Sequence Viewer

Length: 1419 bp
ATGTCCACACTTCCACAACAAGAACCACAACCACCAAACCCAAACCCAAACCCAATGCAGCAACATCCACTCCCCAATTCCAATCCCAATCCCAGTCCCAACCCTAACCCTAATTCCCTTCTTCTTCCCAGAACCATTGCCAATGCCAACACCCGCGACGCTGCCAATGCTGCTTCTGCTTCTTCTTCTCCTGATGCGAATGTGAATGCCATCTCCTCCTCCGAGAATCGCGCCGCTCCATTCACCACCAGCGCTGCCACGTCCTCCTCCTCCTCCTCCTCTTCCTCCTTCTCCGCTACAACAATGCTGGGCAGCACCACTTCCCCCGTTCCCAACAACAACAACAACCACAACCACAACCACCCCTTCATTAGGTCCGCCGCCGCTGCCACCGGTGGGACCCCCCACCACCACCACAGCAGCGGCACGAGCATAAACCACAGGAGGGCCCACTCGGAGGTCAGCTTTCGGTTGCCGGAGGACCTCATGGATCTCTCCGGCCCCGATCCCTTCAACGGCGCCGGATCCTCCACCGACGACTTGGGATCCGAGGAGGATCTCTTCTCCACCTACATCGACCTCGACAAGCTCCAGGCCGGCGCCGCTGACGACAATGGGCCTGATGATAACAAGGGCCCTAATGGGCCCGATGAGAACAACGGCGGTCTCGGAGAGAAGCGGCCGTCGCGGCACAGGCACAGTAGCTCGGTGGATGCGTCGTCCACGTCGACGGGCGTGTTCGGAGAGGTCATGGAGGCCAAGAAGGCAATGCCGCCTGATAAGCTCGCCGAGCTTTGGAATCTTGATCCAAAGCGCGCCAAAAGGATATTAGCAAATCGGCAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCCCGCTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAAACAGAAGCAACCACTCTTTCTGCCCAACTCACATTATTCCAGAGGGACACAACGGGTCTGAGCACTGAAAACACAGAGCTTAAGCTTCGGTTACAAGCTATGGAACAACAAGCTCAGTTGCGAGATTCTCTAAACGAAGCACTGAAGAAGGAGGTTGAGAGGCTCAAGGTTGCCACAGGGGAGATGATGAGCCATTCAGAATCATTCAACTTGGGAATGCACCAAATGCCATACAACAACAACCCGTCCGCGTATTTTCCAATTACACAACAGCAACCAGGACCTGCTGGTCACCAGAACATGCCGTTGCCACCATTCAATCATTCCCAGTCTAGTATGCCCAGTAACCATCTTCATCAGCCAAACTCTCATACTCTTTCAGATATTATGCAGAACGGCCCTGTTGGTCAGTTACAGGGGCTTGACATCAGTAATAAAATGCCACATCTCGTGAAGTCTGAAGGCCCCTCGCTTTCTGCAAGTGAGAGTAGTACCACTTTTTAA

Protein Analysis

472

Amino Acids

50.8

Weight (kDa)

6.12

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 268 - 318 2.3e-06 Basic region leucine zipper
bZIP_1 PF00170 271 - 319 2.5e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013648)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1203
Acc36I ACCTGC 1 cut(s) 1207
AccB1I GGYRCC 2 cut(s) 518, 599
AccBSI CCGCTC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 728
AccII CGCG 5 cut(s) 156, 231, 688, 816, 1166
AclWI GGATC 8 cut(s) 498, 500, 519, 532, 540, 553, 564, 800
AcoI YGGCCR 1 cut(s) 680
AcuI CTGAAG 2 cut(s) 1079, 1395
AcyI GRCGYC 2 cut(s) 519, 600
AfaI GTAC 1 cut(s) 1408
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 6 cut(s) 372, 396, 445, 457, 515, 795
AflII CTTAAG 1 cut(s) 995
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 4 cut(s) 514, 914, 1123, 1234
AjiI CACGTC 2 cut(s) 261, 726
AjnI CCWGG 2 cut(s) 591, 1192
AluBI AGCT 9 cut(s) 465, 589, 705, 784, 793, 994, 1000, 1013, 1028
AluI AGCT 9 cut(s) 465, 589, 705, 784, 793, 994, 1000, 1013, 1028
Alw21I GWGCWC 1 cut(s) 980
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 8 cut(s) 498, 500, 519, 532, 540, 553, 564, 800
AlwNI CAGNNNCTG 1 cut(s) 1199
Aor51HI AGCGCT 1 cut(s) 253
ApaI GGGCCC 3 cut(s) 451, 638, 648
ApeKI GCWGC 8 cut(s) 58, 161, 170, 254, 312, 386, 420, 848
ArsI GACNNNNNNTTYG 2 cut(s) 827, 859
AsiGI ACCGGT 1 cut(s) 392
AspLEI GCGC 7 cut(s) 233, 254, 521, 602, 816, 818, 897
AsuHPI GGTGA 2 cut(s) 235, 1199
AvaII GGWCC 4 cut(s) 375, 399, 481, 1196
BaeGI GKGCMC 3 cut(s) 451, 638, 648
BamHI GGATCC 2 cut(s) 524, 545
BanI GGYRCC 2 cut(s) 518, 599
BanII GRGCYC 3 cut(s) 451, 638, 648
BauI CACGAG 2 cut(s) 427, 1364
Bbv12I GWGCWC 1 cut(s) 980
BbvI GCAGC 8 cut(s) 70, 148, 157, 241, 324, 373, 432, 835
BccI CCATC 2 cut(s) 218, 1272
BceAI ACGGC 5 cut(s) 532, 667, 676, 1204, 1327
BciT130I CCWGG 2 cut(s) 593, 1194
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 1 cut(s) 1248
BfoI RGCGCY 3 cut(s) 255, 522, 603
BfrI CTTAAG 1 cut(s) 995
BfuAI ACCTGC 1 cut(s) 1207
BglI GCCNNNNNGGC 2 cut(s) 688, 764
Bme1390I CCNGG 2 cut(s) 593, 1194
Bme18I GGWCC 4 cut(s) 375, 399, 481, 1196
BmgBI CACGTC 2 cut(s) 261, 726
BmrFI CCNGG 2 cut(s) 593, 1194
BmrI ACTGGG 3 cut(s) 87, 1237, 1251
BmsI GCATC 2 cut(s) 184, 703
BmuI ACTGGG 3 cut(s) 87, 1237, 1251
BpmI CTGGAG 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 911, 1064
BsaHI GRCGYC 2 cut(s) 519, 600
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 549
BsaWI WCCGGW 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 6 cut(s) 372, 396, 445, 457, 515, 795
Bse118I RCCGGY 2 cut(s) 392, 596
Bse1I ACTGG 3 cut(s) 93, 1243, 1257
Bse3DI GCAATG 2 cut(s) 135, 774
BseBI CCWGG 2 cut(s) 593, 1194
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 2 cut(s) 64, 718
BseLI CCNNNNNNNGG 6 cut(s) 372, 396, 445, 457, 515, 795
BseMI GCAATG 2 cut(s) 135, 774
BseMII CTCAG 2 cut(s) 965, 1043
BseNI ACTGG 3 cut(s) 93, 1243, 1257
BsePI GCGCGC 1 cut(s) 814
BseRI GAGGAG 8 cut(s) 205, 208, 256, 259, 262, 265, 268, 566
BseSI GKGCMC 3 cut(s) 451, 638, 648
BseX3I CGGCCG 1 cut(s) 680
BseXI GCAGC 8 cut(s) 70, 148, 157, 241, 324, 373, 432, 835
BseYI CCCAGC 1 cut(s) 307
Bsh1236I CGCG 5 cut(s) 156, 231, 688, 816, 1166
Bsh1285I CGRYCG 1 cut(s) 683
BshNI GGYRCC 2 cut(s) 518, 599
BshTI ACCGGT 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 683
BsiHKAI GWGCWC 1 cut(s) 980
BsiSI CCGG 5 cut(s) 393, 476, 498, 522, 597
BslFI GGGAC 3 cut(s) 81, 412, 974
BslI CCNNNNNNNGG 6 cut(s) 372, 396, 445, 457, 515, 795
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 3 cut(s) 81, 412, 974
BsmI GAATGC 2 cut(s) 211, 1137
Bso31I GGTCTC 1 cut(s) 671
Bsp120I GGGCCC 3 cut(s) 447, 634, 644
Bsp1286I GDGCHC 4 cut(s) 451, 638, 648, 980
Bsp143I GATC 6 cut(s) 490, 505, 524, 545, 556, 805
BspCNI CTCAG 2 cut(s) 966, 1042
BspFNI CGCG 5 cut(s) 156, 231, 688, 816, 1166
BspMI ACCTGC 1 cut(s) 1207
BspPI GGATC 8 cut(s) 498, 500, 519, 532, 540, 553, 564, 800
BspT107I GGYRCC 2 cut(s) 518, 599
BspTI CTTAAG 1 cut(s) 995
BspTNI GGTCTC 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 135, 774
BsrFI RCCGGY 2 cut(s) 392, 596
BsrI ACTGG 3 cut(s) 93, 1243, 1257
BssAI RCCGGY 2 cut(s) 392, 596
BssECI CCNNGG 1 cut(s) 549
BssHII GCGCGC 1 cut(s) 814
BssMI GATC 6 cut(s) 490, 505, 524, 545, 556, 805
BssNI GRCGYC 2 cut(s) 519, 600
BssSI CACGAG 2 cut(s) 427, 1364
Bst2BI CACGAG 2 cut(s) 427, 1364
Bst2UI CCWGG 2 cut(s) 593, 1194
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 2 cut(s) 286, 566
BstACI GRCGYC 2 cut(s) 519, 600
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 1141
BstC8I GCNNGC 5 cut(s) 598, 786, 816, 853, 874
BstDEI CTNAG 2 cut(s) 974, 1029
BstEII GGTNACC 1 cut(s) 1205
BstENI CCTNNNNNAGG 1 cut(s) 370
BstF5I GGATG 2 cut(s) 64, 718
BstFNI CGCG 5 cut(s) 156, 231, 688, 816, 1166
BstH2I RGCGCY 3 cut(s) 255, 522, 603
BstHHI GCGC 7 cut(s) 233, 254, 521, 602, 816, 818, 897
BstKTI GATC 6 cut(s) 493, 508, 527, 548, 559, 808
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 6 cut(s) 490, 505, 524, 545, 556, 805
BstMCI CGRYCG 1 cut(s) 683
BstNI CCWGG 2 cut(s) 593, 1194
BstNSI RCATGY 1 cut(s) 1219
BstPI GGTNACC 1 cut(s) 1205
BstSCI CCNGG 2 cut(s) 591, 1192
BstSLI GKGCMC 3 cut(s) 451, 638, 648
BstUI CGCG 5 cut(s) 156, 231, 688, 816, 1166
BstV1I GCAGC 8 cut(s) 70, 148, 157, 241, 324, 373, 432, 835
BstX2I RGATCY 4 cut(s) 490, 524, 545, 556
BstYI RGATCY 4 cut(s) 490, 524, 545, 556
BstZI CGGCCG 1 cut(s) 680
BtrI CACGTC 2 cut(s) 261, 726
BtsCI GGATG 2 cut(s) 64, 718
BtsIMutI CAGTG 2 cut(s) 978, 1055
BveI ACCTGC 1 cut(s) 1207
Cac8I GCNNGC 5 cut(s) 598, 786, 816, 853, 874
CaiI CAGNNNCTG 1 cut(s) 1199
CfoI GCGC 7 cut(s) 233, 254, 521, 602, 816, 818, 897
Cfr10I RCCGGY 2 cut(s) 392, 596
CseI GACGC 2 cut(s) 167, 705
Csp6I GTAC 1 cut(s) 1407
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 3 cut(s) 487, 751, 1216
CviQI GTAC 1 cut(s) 1407
DdeI CTNAG 2 cut(s) 974, 1029
DinI GGCGCC 2 cut(s) 520, 601
DpnI GATC 6 cut(s) 492, 507, 526, 547, 558, 807
DpnII GATC 6 cut(s) 490, 505, 524, 545, 556, 805
DrdI GACNNNNNNGTC 1 cut(s) 1203
DseDI GACNNNNNNGTC 1 cut(s) 1203
EaeI YGGCCR 1 cut(s) 680
EagI CGGCCG 1 cut(s) 680
Eam1104I CTCTTC 2 cut(s) 286, 566
EarI CTCTTC 2 cut(s) 286, 566
EciI GGCGGA 1 cut(s) 367
EclXI CGGCCG 1 cut(s) 680
Eco24I GRGCYC 3 cut(s) 451, 638, 648
Eco31I GGTCTC 1 cut(s) 671
Eco47I GGWCC 4 cut(s) 375, 399, 481, 1196
Eco47III AGCGCT 1 cut(s) 253
Eco52I CGGCCG 1 cut(s) 680
Eco57I CTGAAG 2 cut(s) 1079, 1395
Eco91I GGTNACC 1 cut(s) 1205
EcoNI CCTNNNNNAGG 1 cut(s) 370
EcoO109I RGGNCCY 7 cut(s) 399, 447, 481, 634, 635, 1196, 1379
EcoO65I GGTNACC 1 cut(s) 1205
EcoRII CCWGG 2 cut(s) 591, 1192
EcoT38I GRGCYC 3 cut(s) 451, 638, 648
EgeI GGCGCC 2 cut(s) 520, 601
EheI GGCGCC 2 cut(s) 520, 601
FaeI CATG 3 cut(s) 490, 754, 1219
FaqI GGGAC 3 cut(s) 81, 412, 974
FatI CATG 3 cut(s) 486, 750, 1215
FauI CCCGC 2 cut(s) 161, 881
FblI GTMKAC 1 cut(s) 728
FokI GGATG 2 cut(s) 51, 725
FriOI GRGCYC 3 cut(s) 451, 638, 648
FspBI CTAG 1 cut(s) 1248
GlaI GCGC 7 cut(s) 232, 253, 520, 601, 815, 817, 896
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 575
HaeII RGCGCY 3 cut(s) 255, 522, 603
HapII CCGG 5 cut(s) 393, 476, 498, 522, 597
HgaI GACGC 2 cut(s) 167, 705
HhaI GCGC 7 cut(s) 233, 254, 521, 602, 816, 818, 897
Hin1I GRCGYC 2 cut(s) 519, 600
Hin1II CATG 3 cut(s) 490, 754, 1219
Hin6I GCGC 7 cut(s) 231, 252, 519, 600, 814, 816, 895
HinP1I GCGC 7 cut(s) 231, 252, 519, 600, 814, 816, 895
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 4 cut(s) 226, 799, 1040, 1115
HpaII CCGG 5 cut(s) 393, 476, 498, 522, 597
HphI GGTGA 2 cut(s) 235, 1199
Hpy166II GTNNAC 3 cut(s) 6, 723, 729
Hpy188III TCNNGA 4 cut(s) 191, 803, 955, 1366
Hpy8I GTNNAC 3 cut(s) 6, 723, 729
Hpy99I CGWCG 6 cut(s) 161, 539, 688, 721, 730, 733
HpyAV CCTTC 9 cut(s) 128, 298, 376, 520, 757, 862, 920, 1057, 1370
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 2 cut(s) 260, 725
HpyCH4V TGCA 4 cut(s) 58, 1135, 1306, 1394
HpyF3I CTNAG 2 cut(s) 974, 1029
HpySE526I ACGT 2 cut(s) 260, 725
Hsp92I GRCGYC 2 cut(s) 519, 600
Hsp92II CATG 3 cut(s) 490, 754, 1219
HspAI GCGC 7 cut(s) 231, 252, 519, 600, 814, 816, 895
KasI GGCGCC 2 cut(s) 518, 599
KflI GGGWCCC 1 cut(s) 399
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Kzo9I GATC 6 cut(s) 490, 505, 524, 545, 556, 805
LmnI GCTCC 2 cut(s) 241, 594
Lsp1109I GCAGC 8 cut(s) 70, 148, 157, 241, 324, 373, 432, 835
LweI GCATC 2 cut(s) 184, 703
MaeI CTAG 1 cut(s) 1248
MaeII ACGT 2 cut(s) 260, 725
MaeIII GTNAC 4 cut(s) 1005, 1205, 1259, 1326
MalI GATC 6 cut(s) 492, 507, 526, 547, 558, 807
MbiI CCGCTC 1 cut(s) 236
MboI GATC 6 cut(s) 490, 505, 524, 545, 556, 805
MboII GAAGA 8 cut(s) 113, 116, 174, 177, 273, 553, 1072, 1259
MflI RGATCY 4 cut(s) 490, 524, 545, 556
MhlI GDGCHC 4 cut(s) 451, 638, 648, 980
MluCI AATT 3 cut(s) 76, 112, 1176
Mly113I GGCGCC 2 cut(s) 519, 600
MroNI GCCGGC 1 cut(s) 596
MseI TTAA 2 cut(s) 996, 1417
MspA1I CMGCKG 3 cut(s) 386, 423, 605
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 5 cut(s) 393, 476, 498, 522, 597
MspR9I CCNGG 2 cut(s) 593, 1194
Mva1269I GAATGC 2 cut(s) 211, 1137
MvaI CCWGG 2 cut(s) 593, 1194
MvnI CGCG 5 cut(s) 156, 231, 688, 816, 1166
NaeI GCCGGC 1 cut(s) 598
NarI GGCGCC 2 cut(s) 519, 600
NdeII GATC 6 cut(s) 490, 505, 524, 545, 556, 805
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 3 cut(s) 490, 754, 1219
NmeAIII GCCGAG 1 cut(s) 814
NmuCI GTSAC 1 cut(s) 1205
NspI RCATGY 1 cut(s) 1219
PauI GCGCGC 1 cut(s) 814
PcsI WCGNNNNNNNCGW 2 cut(s) 713, 725
PctI GAATGC 2 cut(s) 211, 1137
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 4 cut(s) 226, 799, 1040, 1115
PinAI ACCGGT 1 cut(s) 392
PluTI GGCGCC 2 cut(s) 522, 603
PpuMI RGGWCCY 3 cut(s) 399, 481, 1196
Psp5II RGGWCCY 3 cut(s) 399, 481, 1196
Psp6I CCWGG 2 cut(s) 591, 1192
PspEI GGTNACC 1 cut(s) 1205
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 2 cut(s) 591, 1192
PspOMI GGGCCC 3 cut(s) 447, 634, 644
PspPPI RGGWCCY 3 cut(s) 399, 481, 1196
PstNI CAGNNNCTG 1 cut(s) 1199
PsuI RGATCY 4 cut(s) 490, 524, 545, 556
PteI GCGCGC 1 cut(s) 814
RsaI GTAC 1 cut(s) 1408
RsaNI GTAC 1 cut(s) 1407
SalI GTCGAC 1 cut(s) 727
SaqAI TTAA 2 cut(s) 996, 1417
Sau3AI GATC 6 cut(s) 490, 505, 524, 545, 556, 805
ScrFI CCNGG 2 cut(s) 593, 1194
SduI GDGCHC 4 cut(s) 451, 638, 648, 980
SfaNI GCATC 2 cut(s) 184, 703
SfoI GGCGCC 2 cut(s) 520, 601
SgrAI CRCCGGYG 1 cut(s) 392
SgrDI CGTCGACG 1 cut(s) 727
SinI GGWCC 4 cut(s) 375, 399, 481, 1196
SmlI CTYRAG 3 cut(s) 890, 995, 1079
SmoI CTYRAG 3 cut(s) 890, 995, 1079
Sse9I AATT 3 cut(s) 76, 112, 1176
SspDI GGCGCC 2 cut(s) 518, 599
SspMI CTAG 1 cut(s) 1248
StyD4I CCNGG 2 cut(s) 591, 1192
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 2 cut(s) 263, 728
TaqI TCGA 3 cut(s) 576, 582, 728
TasI AATT 3 cut(s) 76, 112, 1176
TauI GCSGC 8 cut(s) 236, 383, 386, 426, 605, 682, 691, 775
TfiI GAWTC 4 cut(s) 226, 799, 1040, 1115
Tru1I TTAA 2 cut(s) 996, 1417
Tru9I TTAA 2 cut(s) 996, 1417
TscAI CASTG 2 cut(s) 985, 1062
TseFI GTSAC 1 cut(s) 1205
TseI GCWGC 8 cut(s) 58, 161, 170, 254, 312, 386, 420, 848
Tsp45I GTSAC 1 cut(s) 1205
TspDTI ATGAA 2 cut(s) 358, 1259
TspRI CASTG 2 cut(s) 985, 1062
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 4 cut(s) 375, 399, 481, 1196
XagI CCTNNNNNAGG 1 cut(s) 370
XceI RCATGY 1 cut(s) 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 728
XspI CTAG 1 cut(s) 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.