Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Reverse (-)

36846079 .. 36848870

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATGTCAGCATTGATCTCACCCTGACCCTTGGGTTACCCTCTGCAAATGATTCTCGAGTACCTCGATCTCCTTATCAAGTCAATACATCTGCTGCTGCCGGTAGTCAGGGCTTTGGTTCTGGAGCTTCTGCTGGCAACGCTTATGAGAGAGAATACTATGATGCAACCAGTACTATCATGGAGTTCGAGCAGAGATCAGTCTCAAGAGAAATGAAGTACTGCGTGATCGATGTCTCCATCACGAAAGGGAAGGTCGGGGGCTCAAAAAAAAGGAAGACACCCCACTCTGATGAACGCCCCGTGGTGCCGAAACCCGAAGATCGGAACAGGAGGTGCACCAATATCAACTGTCGGGCCTCTCAAACTCCAATGTGGCGCACAGGACCTCTAGGACCAAAGTCACTATGCAACGCTTGTGGGATCAGATATCGCAAGCTCAAGCTGAAGGAGAAGCAAGGGGAGGGAGCTTATTCCGGAGAGGGCAGCTCTAGTGCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

168

Amino Acids

18.13

Weight (kDa)

9.46

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	117 - 149	1.7e-13	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	476
AclWI	GGATC	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	3 cut(s)	63, 175, 221
AfiI	CCNNNNNNNGG	1 cut(s)	324
AluBI	AGCT	5 cut(s)	128, 439, 445, 470, 489
AluI	AGCT	5 cut(s)	128, 439, 445, 470, 489
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	208, 241
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	476
AoxI	GGCC	1 cut(s)	357
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	3 cut(s)	95, 98, 486
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	3 cut(s)	357, 386, 395
AsuHPI	GGTGA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	2 cut(s)	386, 395
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	82, 85, 498
BccI	CCATC	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	208, 241
BfaI	CTAG	2 cut(s)	392, 492
BisI	GCNGC	3 cut(s)	96, 99, 487
BlsI	GCNGC	3 cut(s)	97, 100, 488
BmcAI	AGTACT	2 cut(s)	175, 221
Bme18I	GGWCC	2 cut(s)	386, 395
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	357, 386, 395
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	284
BplI	GAGNNNNNCTC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	190, 425
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	31, 303
BsaWI	WCCGGW	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	476
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	31, 303
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	3 cut(s)	82, 85, 498
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	341
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	102, 477
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	208, 241
BsnI	GGCC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	266, 341
Bsp13I	TCCGGA	1 cut(s)	476
Bsp143I	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
BspANI	GGCC	1 cut(s)	359
BspDI	ATCGAT	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	31, 303
BssMI	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	136, 437
BstDSI	CCRYGG	1 cut(s)	303
BstEII	GGTNACC	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	6 cut(s)	19, 71, 200, 231, 325, 426
BstMAI	GTCTC	2 cut(s)	208, 241
BstMBI	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPAI	GACNNNNGTC	1 cut(s)	400
BstPI	GGTNACC	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	82, 85, 498
BstV2I	GAAGAC	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	359
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	136, 437
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	357, 386, 395
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	62, 174, 220
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	8 cut(s)	114, 128, 264, 359, 439, 445, 470, 489
CviKI_1	RGCY	8 cut(s)	114, 128, 264, 359, 439, 445, 470, 489
CviQI	GTAC	3 cut(s)	62, 174, 220
DpnI	GATC	6 cut(s)	18, 70, 199, 230, 324, 425
DpnII	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	386, 395
Eco57I	CTGAAG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	184
FaiI	YATR	5 cut(s)	147, 162, 182, 409, 502
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	96, 99, 487
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	96, 99, 487
FspBI	CTAG	2 cut(s)	392, 492
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	3 cut(s)	96, 99, 487
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	102, 477
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	2 cut(s)	102, 477
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	3 cut(s)	292, 327, 428
Hpy188III	TCNNGA	5 cut(s)	57, 123, 207, 244, 477
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	2 cut(s)	247, 442
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	5 cut(s)	47, 167, 339, 411, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	476
Kzo9I	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
LmnI	GCTCC	2 cut(s)	125, 467
LpnPI	CCDG	9 cut(s)	38, 95, 108, 115, 120, 184, 316, 369, 490
Lsp1109I	GCAGC	3 cut(s)	82, 85, 498
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	392, 492
MaeIII	GTNAC	2 cut(s)	36, 402
MalI	GATC	6 cut(s)	18, 70, 199, 230, 324, 425
MboI	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
MboII	GAAGA	2 cut(s)	289, 332
MhlI	GDGCHC	2 cut(s)	266, 341
MnlI	CCTC	7 cut(s)	52, 75, 327, 370, 399, 457, 475
MroI	TCCGGA	1 cut(s)	476
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	2 cut(s)	102, 477
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	97, 100, 488
PpuMI	RGGWCCY	1 cut(s)	386
PshAI	GACNNNNGTC	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	386
PspEI	GGTNACC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	3 cut(s)	357, 386, 395
PspPPI	RGGWCCY	1 cut(s)	386
RsaI	GTAC	3 cut(s)	63, 175, 221
RsaNI	GTAC	3 cut(s)	62, 174, 220
RseI	CAYNNNNRTG	1 cut(s)	291
SatI	GCNGC	3 cut(s)	96, 99, 487
Sau3AI	GATC	6 cut(s)	16, 68, 197, 228, 322, 423
Sau96I	GGNCC	3 cut(s)	357, 386, 395
ScaI	AGTACT	2 cut(s)	175, 221
SduI	GDGCHC	2 cut(s)	266, 341
SetI	ASST	9 cut(s)	67, 130, 258, 338, 391, 441, 447, 472, 491
SfaNI	GCATC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	386, 395
SlaI	CTCGAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	57, 205, 440
SmoI	CTYRAG	3 cut(s)	57, 205, 440
SspMI	CTAG	2 cut(s)	392, 492
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	4 cut(s)	58, 67, 189, 231
TatI	WGTACW	2 cut(s)	173, 219
TfiI	GAWTC	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	3 cut(s)	95, 98, 486
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	2 cut(s)	230, 309
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	386, 395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	2 cut(s)	392, 492
ZrmI	AGTACT	2 cut(s)	175, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.