Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Reverse (-)

64700837 .. 64702223

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0470300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTGTACTCGTTTTTGGTGGGGGAGTACTCTTGATAAGAGAAAAATTCATTGGAAAACTTGGAAGGCTTTGTGTAACCCAAAGGAGGAGGGTAGTATAGGGTTTCGTAGTTTGTCAAATTTCAATACTGCAATGTTGGCAAAACAAGCTTGGCGTGTGGTGAACAATTCGACTTCTTTAGTGGCTCGGATCTATAAAGCAAAATACTATCCGGATACTACCTTTTGGTTAACTGGGATCGGTAATGGTTTGTCTGTTGATATTTGGTCGGATTTTTGGGTGCCTGGAGTCCCAGATTACAAGCCGGTTGATAATGGCATAGCTTCGTTAGAGGTTAGACAAGTTAGCGAGCTGTTGAATCAAGTAAGGAGGTGGAATGAACTACTAGTTAGACGAATCTTTCCAATGGAGGAAGCTGAAGCTATACTGACTATACCTCTAAGGTCTAGAACTGTTGAGGATAGAGTGGTGTGGAGAATGGAAAAGAGTGGATTGCTCATTCACAAAACAACTGCTTCAAACCAATGGAGTGTTATCTCAGTTAAAGATTTGGGTGATTTGATTTATCTCTTGTGGGTAATTTGGAAGGAGAGTAACTGTCTGATTTGGGATAATAGAAGTGTCACAACTTCTGAAGTGCTTCTTATGTCCATGACTAGGCTGCATGCTTTTAGGTTTCATAATTCAAAACCTCATATTGGAGGTACTGTGAGGATTTCACGTTGGTCTTCTCCTCCTTTGGGATGGTACAAGATTAATGTGGATGGTTCCTATAATCATACCACAAAATGTGGAGGAGTGAGTTTTGTAGTAAGGGATAACTTGGGCAACTTTCTCGCTGGGGGAGGTAGGCCATTGCAGGGGTTATTATGCCCGAAGCATGTTGAGGTGTTGGGCTGCAGATTGGTAGCGAACTTTGCTGTGGGGCAGGGGTTTGTTCTTGCTTTACTGGAGCTTGATGCTCAGGTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.88

Weight (kDa)

9.55

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	211
AclWI	GGATC	2 cut(s)	197, 245
AcsI	RAATTY	2 cut(s)	45, 118
AcuI	CTGAAG	2 cut(s)	438, 654
AfaI	GTAC	4 cut(s)	7, 28, 706, 749
AfiI	CCNNNNNNNGG	5 cut(s)	85, 657, 698, 740, 860
AgsI	TTSAA	4 cut(s)	124, 358, 519, 687
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AluBI	AGCT	6 cut(s)	149, 323, 352, 416, 422, 955
AluI	AGCT	6 cut(s)	149, 323, 352, 416, 422, 955
AlwI	GGATC	2 cut(s)	197, 245
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	661, 897
ApoI	RAATTY	2 cut(s)	45, 118
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	639
AsuHPI	GGTGA	2 cut(s)	172, 566
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	720
BbvI	GCAGC	2 cut(s)	648, 884
BccI	CCATC	2 cut(s)	738, 758
BcgI	CGANNNNNNTGC	2 cut(s)	817, 851
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	3 cut(s)	386, 447, 657
BfmI	CTRYAG	1 cut(s)	898
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	662, 898
BlsI	GCNGC	2 cut(s)	663, 899
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	282, 769
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	949
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	720
BpmI	CTGGAG	2 cut(s)	306, 971
Bpu10I	CCTNAGC	1 cut(s)	963
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 657, 698, 740, 860
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	238, 954
Bse3DI	GCAATG	2 cut(s)	138, 854
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	285
BseGI	GGATG	2 cut(s)	749, 769
BseLI	CCNNNNNNNGG	5 cut(s)	85, 657, 698, 740, 860
BseMI	GCAATG	2 cut(s)	138, 854
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	238, 954
BseRI	GAGGAG	3 cut(s)	101, 723, 810
BseXI	GCAGC	2 cut(s)	648, 884
BseYI	CCCAGC	1 cut(s)	839
BshFI	GGCC	1 cut(s)	853
BshNI	GGYRCC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	212, 305
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	5 cut(s)	85, 657, 698, 740, 860
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	853
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	189, 237
BspANI	GGCC	1 cut(s)	853
BspCNI	CTCAG	1 cut(s)	551
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	282, 769
BspMAI	CTGCAG	1 cut(s)	902
BspPI	GGATC	2 cut(s)	197, 245
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	2 cut(s)	138, 854
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	238, 954
BssAI	RCCGGY	1 cut(s)	304
BssMI	GATC	2 cut(s)	189, 237
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	454, 599, 709
BstC8I	GCNNGC	2 cut(s)	350, 666
BstDEI	CTNAG	3 cut(s)	440, 538, 963
BstF5I	GGATG	2 cut(s)	749, 769
BstKTI	GATC	2 cut(s)	192, 240
BstMBI	GATC	2 cut(s)	189, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 146, 917
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	668, 884
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	898
BstV1I	GCAGC	2 cut(s)	648, 884
BstV2I	GAAGAC	1 cut(s)	720
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	853
BtsCI	GGATG	2 cut(s)	749, 769
Cac8I	GCNNGC	2 cut(s)	350, 666
Cfr10I	RCCGGY	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	6, 27, 705, 748
CviAII	CATG	3 cut(s)	652, 665, 881
CviQI	GTAC	4 cut(s)	6, 27, 705, 748
DdeI	CTNAG	3 cut(s)	440, 538, 963
DpnI	GATC	2 cut(s)	191, 239
DpnII	GATC	2 cut(s)	189, 237
Eco57I	CTGAAG	2 cut(s)	438, 654
EcoRII	CCWGG	1 cut(s)	283
FaeI	CATG	3 cut(s)	655, 668, 884
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	3 cut(s)	651, 664, 880
Fnu4HI	GCNGC	2 cut(s)	662, 898
FokI	GGATG	2 cut(s)	756, 776
Fsp4HI	GCNGC	2 cut(s)	662, 898
FspBI	CTAG	3 cut(s)	386, 447, 657
GluI	GCNGC	2 cut(s)	662, 898
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	2 cut(s)	306, 971
HaeIII	GGCC	1 cut(s)	853
HapII	CCGG	2 cut(s)	212, 305
Hin1II	CATG	3 cut(s)	655, 668, 884
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	3 cut(s)	288, 358, 396
HpaI	GTTAAC	1 cut(s)	231
HpaII	CCGG	2 cut(s)	212, 305
HphI	GGTGA	2 cut(s)	172, 566
Hpy166II	GTNNAC	3 cut(s)	6, 163, 231
Hpy188I	TCNGA	4 cut(s)	189, 271, 603, 634
Hpy188III	TCNNGA	3 cut(s)	32, 212, 447
Hpy8I	GTNNAC	3 cut(s)	6, 163, 231
HpyAV	CCTTC	2 cut(s)	58, 580
HpyCH4III	ACNGT	3 cut(s)	454, 599, 709
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	4 cut(s)	131, 664, 859, 900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 146, 917
HpyF3I	CTNAG	3 cut(s)	440, 538, 963
HpySE526I	ACGT	1 cut(s)	721
Hsp92II	CATG	3 cut(s)	655, 668, 884
Kpn2I	TCCGGA	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	189, 237
LmnI	GCTCC	1 cut(s)	952
Lsp1109I	GCAGC	2 cut(s)	648, 884
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	3 cut(s)	386, 447, 657
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	3 cut(s)	74, 593, 622
MalI	GATC	2 cut(s)	191, 239
MboI	GATC	2 cut(s)	189, 237
MboII	GAAGA	1 cut(s)	720
MflI	RGATCY	1 cut(s)	189
MluCI	AATT	5 cut(s)	45, 118, 166, 579, 682
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	249
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	3 cut(s)	230, 543, 756
MspI	CCGG	2 cut(s)	212, 305
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	137, 146, 917
NdeII	GATC	2 cut(s)	189, 237
NlaIII	CATG	3 cut(s)	655, 668, 884
NlaIV	GGNNCC	2 cut(s)	282, 769
NmuCI	GTSAC	1 cut(s)	622
NspI	RCATGY	2 cut(s)	668, 884
PaeI	GCATGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	358, 396
PkrI	GCNGC	2 cut(s)	663, 899
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	282, 769
PstI	CTGCAG	1 cut(s)	902
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	4 cut(s)	7, 28, 706, 749
RsaNI	GTAC	4 cut(s)	6, 27, 705, 748
SaqAI	TTAA	3 cut(s)	230, 543, 756
SatI	GCNGC	2 cut(s)	662, 898
Sau3AI	GATC	2 cut(s)	189, 237
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	949
SfcI	CTRYAG	1 cut(s)	898
SpeI	ACTAGT	1 cut(s)	385
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	5 cut(s)	45, 118, 166, 579, 682
SspMI	CTAG	3 cut(s)	386, 447, 657
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	454, 599, 709
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	1 cut(s)	170
TasI	AATT	5 cut(s)	45, 118, 166, 579, 682
TatI	WGTACW	2 cut(s)	5, 26
TfiI	GAWTC	2 cut(s)	358, 396
Tru1I	TTAA	3 cut(s)	230, 543, 756
Tru9I	TTAA	3 cut(s)	230, 543, 756
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	2 cut(s)	661, 897
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	3 cut(s)	38, 393, 668
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	2 cut(s)	45, 118
XbaI	TCTAGA	1 cut(s)	446
XceI	RCATGY	2 cut(s)	668, 884
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	3 cut(s)	386, 447, 657
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.