Rh5DG488600

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015589
Physical Location & Seq
Forward (+)
76761620 .. 76778091
16472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG488600.1

Sequence Viewer

Length: 309 bp
ATGGATTCCGTGGACTTGACACTCACACTCCGTTTGCCGTCTGCCGAGGATGATCACAACAATGATGATCATCCTCAAGTTTTTCAGCATCCTCAATTTCCTCAGCTCGTCAACGGACCTGGTTCCCCCAACCTTACTCAGCGTAGAGGACCTTTGGGACCAAAGACACTTTGCAACGCTTGCGGGATCAAGTATCGCAAGCTCAAGCTCAAGGAGGAGCAAGGGGAGGACCTGACCGGGAGGTATCTGCAGGAGAGGGCAGCTCTAATTGATCAGAAGGATAATACAAAGAAGAATCCTGAGTGTTAG

Protein Analysis

102

Amino Acids

11.51

Weight (kDa)

6.27

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 48 - 70 1.2e-07 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 194
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 4 cut(s) 106, 202, 208, 263
AluI AGCT 4 cut(s) 106, 202, 208, 263
AlwI GGATC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 260
AspS9I GGNCC 4 cut(s) 116, 149, 158, 229
AsuC2I CCSGG 1 cut(s) 238
AvaII GGWCC 4 cut(s) 116, 149, 158, 229
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 3 cut(s) 52, 67, 271
BcnI CCSGG 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 120, 238
Bme18I GGWCC 4 cut(s) 116, 149, 158, 229
BmgT120I GGNCC 4 cut(s) 116, 149, 158, 229
BmiI GGNNCC 2 cut(s) 124, 159
BmrFI CCNGG 2 cut(s) 120, 238
BmsI GCATC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 247, 279
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 3 cut(s) 60, 188, 194
BpuMI CCSGG 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 9, 45
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse8I GATNNNNATC 1 cut(s) 69
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 9, 45
BseGI GGATG 3 cut(s) 55, 70, 88
BseJI GATNNNNATC 1 cut(s) 69
BseMII CTCAG 3 cut(s) 116, 152, 291
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 171
Bsp143I GATC 4 cut(s) 52, 67, 186, 271
BspACI CCGC 1 cut(s) 183
BspCNI CTCAG 3 cut(s) 115, 151, 292
BspLI GGNNCC 2 cut(s) 124, 159
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 1 cut(s) 194
BssECI CCNNGG 2 cut(s) 9, 45
BssMI GATC 4 cut(s) 52, 67, 186, 271
Bst2UI CCWGG 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 181, 200
BstDEI CTNAG 3 cut(s) 102, 138, 300
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 3 cut(s) 55, 70, 88
BstKTI GATC 4 cut(s) 55, 70, 189, 274
BstMBI GATC 4 cut(s) 52, 67, 186, 271
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 2 cut(s) 118, 236
BstSFI CTRYAG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 3 cut(s) 55, 70, 88
Cac8I GCNNGC 2 cut(s) 181, 200
Cfr13I GGNCC 4 cut(s) 116, 149, 158, 229
CsiI ACCWGGT 1 cut(s) 118
CviJI RGCY 4 cut(s) 106, 202, 208, 263
CviKI_1 RGCY 4 cut(s) 106, 202, 208, 263
DdeI CTNAG 3 cut(s) 102, 138, 300
DpnI GATC 4 cut(s) 54, 69, 188, 273
DpnII GATC 4 cut(s) 52, 67, 186, 271
Eco47I GGWCC 4 cut(s) 116, 149, 158, 229
EcoO109I RGGNCCY 2 cut(s) 149, 229
EcoRII CCWGG 1 cut(s) 118
FaqI GGGAC 1 cut(s) 171
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 3 cut(s) 52, 67, 271
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 3 cut(s) 57, 62, 75
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
HapII CCGG 1 cut(s) 237
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 5, 295
HpaII CCGG 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 13, 112
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 2 cut(s) 13, 112
HpyAV CCTTC 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 174, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 3 cut(s) 102, 138, 300
Ksp22I TGATCA 3 cut(s) 52, 67, 271
Kzo9I GATC 4 cut(s) 52, 67, 186, 271
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 105, 132, 236, 245, 250
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 97
MabI ACCWGGT 1 cut(s) 118
MalI GATC 4 cut(s) 54, 69, 188, 273
MboI GATC 4 cut(s) 52, 67, 186, 271
MboII GAAGA 1 cut(s) 304
MluCI AATT 2 cut(s) 95, 267
MnlI CCTC 9 cut(s) 40, 84, 102, 111, 140, 208, 220, 234, 249
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 120, 238
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 238
NdeII GATC 4 cut(s) 52, 67, 186, 271
NlaIV GGNNCC 2 cut(s) 124, 159
NmeAIII GCCGAG 1 cut(s) 70
PfeI GAWTC 2 cut(s) 5, 295
PkrI GCNGC 1 cut(s) 262
PpuMI RGGWCCY 2 cut(s) 149, 229
Psp5II RGGWCCY 2 cut(s) 149, 229
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 124, 159
PspPI GGNCC 4 cut(s) 116, 149, 158, 229
PspPPI RGGWCCY 2 cut(s) 149, 229
PstI CTGCAG 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 60
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 4 cut(s) 52, 67, 186, 271
Sau96I GGNCC 4 cut(s) 116, 149, 158, 229
ScrFI CCNGG 2 cut(s) 120, 238
SetI ASST 9 cut(s) 108, 121, 135, 154, 204, 210, 234, 245, 265
SexAI ACCWGGT 1 cut(s) 118
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 248
SinI GGWCC 4 cut(s) 116, 149, 158, 229
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 3 cut(s) 75, 203, 209
SmoI CTYRAG 3 cut(s) 75, 203, 209
Sse9I AATT 2 cut(s) 95, 267
SsiI CCGC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 118, 236
TasI AATT 2 cut(s) 95, 267
TfiI GAWTC 2 cut(s) 5, 295
TseI GCWGC 1 cut(s) 260
TspGWI ACGGA 2 cut(s) 20, 129
VpaK11BI GGWCC 4 cut(s) 116, 149, 158, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.