Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Reverse (-)

36876858 .. 36879589

Gene Structure 2732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGCCCTCGACTTAACCCTCAGGCTTGGATTACCAACCTCCACTGATCCTCAAGTAATTCCTCCTCAGCAGTTTCCCCTTAATATATATGCTGCTCCCAGATGGGCTCAGGGCTTTGGTTATGGAGCTTCTGCTGGCAGGGCTCATGCTGACGAATACTCGGCTACCATGAATCTAACGGATTTTCAGAGATCCATTAAGGAGTACTGCCTGCTCACTGTCTCCATCACGCAAGGGAAGGTCGGGGGATCAAAGAAAAGGAAGACACCCCACTCTGATGAACGCCCCGTGGTGCCGAGACCTGAAGATCGGAACAGGACTTGTTCTAACTTCAACTGTCGGGCAGCTGCAACTCCAATGTGGCGTACAGGACCTCTAGGGCCAAAGTCACTTTGCAACGCTTGTGGGATCAAGTATCGCAAGCTCAAGCTCAAGGAGAAGCAACGGGAGGTGGGAGCTTCCGGAGAGGGCAGCTCTAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

163

Amino Acids

17.67

Weight (kDa)

9.74

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	113 - 145	5.8e-13	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	464
AclWI	GGATC	4 cut(s)	44, 189, 259, 419
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	2 cut(s)	209, 370
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	6 cut(s)	131, 350, 427, 433, 461, 477
AluI	AGCT	6 cut(s)	131, 350, 427, 433, 461, 477
Alw26I	GTCTC	2 cut(s)	229, 295
AlwI	GGATC	4 cut(s)	44, 189, 259, 419
Aor13HI	TCCGGA	1 cut(s)	464
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	5 cut(s)	5, 95, 347, 350, 474
AspS9I	GGNCC	2 cut(s)	374, 383
AvaII	GGWCC	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	112, 148
BbsI	GAAGAC	1 cut(s)	272
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	17, 82, 337, 359
BccI	CCATC	2 cut(s)	99, 236
BcoDI	GTCTC	2 cut(s)	229, 295
BfaI	CTAG	2 cut(s)	380, 480
BisI	GCNGC	5 cut(s)	6, 96, 348, 351, 475
BlsI	GCNGC	5 cut(s)	7, 97, 349, 352, 476
BmcAI	AGTACT	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	374, 383
BmiI	GGNNCC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	1 cut(s)	461
Bpu10I	CCTNAGC	2 cut(s)	69, 111
BpuEI	CTTGAG	3 cut(s)	39, 413, 419
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	464
Bse21I	CCTNAGG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	37, 83, 125
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	4 cut(s)	17, 82, 337, 359
BshFI	GGCC	1 cut(s)	385
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	465
BsmAI	GTCTC	2 cut(s)	229, 295
BsnI	GGCC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	112, 148
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	5 cut(s)	49, 194, 251, 310, 411
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	3 cut(s)	36, 82, 124
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	4 cut(s)	44, 189, 259, 419
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	5 cut(s)	49, 194, 251, 310, 411
Bst4CI	ACNGT	2 cut(s)	223, 341
BstC8I	GCNNGC	3 cut(s)	139, 215, 425
BstDEI	CTNAG	3 cut(s)	23, 69, 111
BstDSI	CCRYGG	1 cut(s)	291
BstKTI	GATC	5 cut(s)	52, 197, 254, 313, 414
BstMAI	GTCTC	2 cut(s)	229, 295
BstMBI	GATC	5 cut(s)	49, 194, 251, 310, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	17, 82, 337, 359
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	45, 219
Cac8I	GCNNGC	3 cut(s)	139, 215, 425
Cfr13I	GGNCC	2 cut(s)	374, 383
Csp6I	GTAC	2 cut(s)	208, 369
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	2 cut(s)	149, 172
CviQI	GTAC	2 cut(s)	208, 369
DdeI	CTNAG	3 cut(s)	23, 69, 111
DpnI	GATC	5 cut(s)	51, 196, 253, 312, 413
DpnII	GATC	5 cut(s)	49, 194, 251, 310, 411
Eco24I	GRGCYC	2 cut(s)	112, 148
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	374
EcoT38I	GRGCYC	2 cut(s)	112, 148
FaeI	CATG	2 cut(s)	152, 175
FaiI	YATR	7 cut(s)	89, 91, 93, 126, 150, 173, 487
FatI	CATG	2 cut(s)	148, 171
Fnu4HI	GCNGC	5 cut(s)	6, 96, 348, 351, 475
FriOI	GRGCYC	2 cut(s)	112, 148
Fsp4HI	GCNGC	5 cut(s)	6, 96, 348, 351, 475
FspBI	CTAG	2 cut(s)	380, 480
GluI	GCNGC	5 cut(s)	6, 96, 348, 351, 475
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	2 cut(s)	152, 175
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	192, 280, 315
Hpy188III	TCNNGA	1 cut(s)	465
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	223, 341
HpyCH4V	TGCA	3 cut(s)	353, 399, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	23, 69, 111
Hsp92II	CATG	2 cut(s)	152, 175
Kpn2I	TCCGGA	1 cut(s)	464
Kzo9I	GATC	5 cut(s)	49, 194, 251, 310, 411
LmnI	GCTCC	3 cut(s)	103, 128, 458
Lsp1109I	GCAGC	4 cut(s)	17, 82, 337, 359
MaeI	CTAG	2 cut(s)	380, 480
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	5 cut(s)	51, 196, 253, 312, 413
MboI	GATC	5 cut(s)	49, 194, 251, 310, 411
MboII	GAAGA	2 cut(s)	277, 320
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	112, 148
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	9 cut(s)	20, 32, 52, 63, 75, 78, 387, 445, 463
MroI	TCCGGA	1 cut(s)	464
MseI	TTAA	3 cut(s)	17, 84, 201
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	5 cut(s)	49, 194, 251, 310, 411
NlaIII	CATG	2 cut(s)	152, 175
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	2 cut(s)	143, 324
NmuCI	GTSAC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	7, 97, 349, 352, 476
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	2 cut(s)	374, 383
PspPPI	RGGWCCY	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	209, 370
RsaNI	GTAC	2 cut(s)	208, 369
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	17, 84, 201
SatI	GCNGC	5 cut(s)	6, 96, 348, 351, 475
Sau3AI	GATC	5 cut(s)	49, 194, 251, 310, 411
Sau96I	GGNCC	2 cut(s)	374, 383
ScaI	AGTACT	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	112, 148
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	3 cut(s)	54, 428, 434
SmoI	CTYRAG	3 cut(s)	54, 428, 434
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	380, 480
TaaI	ACNGT	2 cut(s)	223, 341
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	17, 84, 201
Tru9I	TTAA	3 cut(s)	17, 84, 201
TscAI	CASTG	2 cut(s)	52, 226
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	5 cut(s)	5, 95, 347, 350, 474
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	2 cut(s)	188, 297
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	52, 226
VpaK11BI	GGWCC	1 cut(s)	374
XspI	CTAG	2 cut(s)	380, 480
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.