Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Forward (+)

3367832 .. 3369424

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATCAAGTTGACTTAACGCTGAAACTAAGCTTACCGTCTATCCAGGATGACGATCATCCTGATGAAGTTCCTCAGGATGTTCCTCAACATCTCAATGCACATGGTTCTTACGATATTAATCAGGGCTTGGGTTTTGGATCTGCTGTATCTGCTGGCAATGCTCATGCATCACAATACTCTGCAATGAGTATAACTGATTTCCAGAGGTCAGTCTCTGTTACCGAAAGAAGGCAACAGAGACTTGCTCCCCCAACAGAAATGAGGGAATTTTGTGTCCTAAATGTATCCCACAACAAAGGCAAGGTCGGGGGATCTAGAAAAAAGAACACAACTCGCTGTCAACGCCCTGCGCCAAAAATTGATAATCAGAATAGGACCTGTACAAACTTTAATTGTCGGGTCAGCGAAACTCCAATGTGGCGTAGAGGACCTCTGGGGCCAAAGGTAAGTTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

153

Amino Acids

16.93

Weight (kDa)

9.04

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	12, 148, 322
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	456
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	1 cut(s)	436
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	2 cut(s)	220, 235
AlwI	GGATC	3 cut(s)	12, 148, 322
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	269
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	378, 431, 440
AvaII	GGWCC	2 cut(s)	378, 431
AxyI	CCTNAGG	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	220, 235
BfaI	CTAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	378, 431
BmgT120I	GGNCC	3 cut(s)	378, 431, 440
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	179
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BsaBI	GATNNNNATC	2 cut(s)	54, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	2 cut(s)	166, 192
Bse8I	GATNNNNATC	2 cut(s)	54, 120
BseBI	CCWGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	55, 58, 85
BseJI	GATNNNNATC	2 cut(s)	54, 120
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	166, 192
BseMII	CTCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	220, 235
BsnI	GGCC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	383
Bsp143I	GATC	4 cut(s)	4, 55, 140, 314
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	3 cut(s)	12, 148, 322
BsrDI	GCAATG	2 cut(s)	166, 192
BsrGI	TGTACA	1 cut(s)	383
BssMI	GATC	4 cut(s)	4, 55, 140, 314
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	29, 75
BstF5I	GGATG	3 cut(s)	55, 58, 85
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	7, 58, 143, 317
BstMAI	GTCTC	2 cut(s)	220, 235
BstMBI	GATC	4 cut(s)	4, 55, 140, 314
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 345
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	140, 314
BstYI	RGATCY	2 cut(s)	140, 314
Bsu36I	CCTNAGG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	55, 58, 85
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	378, 431, 440
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	2 cut(s)	104, 167
CviJI	RGCY	3 cut(s)	33, 129, 442
CviKI_1	RGCY	3 cut(s)	33, 129, 442
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	2 cut(s)	29, 75
DpnI	GATC	4 cut(s)	6, 57, 142, 316
DpnII	GATC	4 cut(s)	4, 55, 140, 314
Eco47I	GGWCC	2 cut(s)	378, 431
Eco81I	CCTNAGG	1 cut(s)	75
EcoO109I	RGGNCCY	2 cut(s)	378, 431
EcoRII	CCWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	172
FaeI	CATG	2 cut(s)	107, 170
FaiI	YATR	3 cut(s)	105, 168, 194
FatI	CATG	2 cut(s)	103, 166
FokI	GGATG	3 cut(s)	45, 62, 92
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	107, 170
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	13, 344
HindII	GTYRAC	2 cut(s)	13, 344
HindIII	AAGCTT	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	13, 344
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	4 cut(s)	62, 77, 205, 318
Hpy8I	GTNNAC	2 cut(s)	13, 344
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	101, 170, 185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 345
HpyF3I	CTNAG	2 cut(s)	29, 75
Hsp92II	CATG	2 cut(s)	107, 170
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	4 cut(s)	4, 55, 140, 314
LmnI	GCTCC	1 cut(s)	253
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	4 cut(s)	6, 57, 142, 316
MboI	GATC	4 cut(s)	4, 55, 140, 314
MflI	RGATCY	2 cut(s)	140, 314
MluCI	AATT	3 cut(s)	269, 360, 394
MnlI	CCTC	6 cut(s)	84, 96, 201, 258, 422, 444
Mph1103I	ATGCAT	1 cut(s)	172
MseI	TTAA	4 cut(s)	17, 120, 393, 460
MslI	CAYNNNNRTG	2 cut(s)	63, 96
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 345
NdeII	GATC	4 cut(s)	4, 55, 140, 314
NlaIII	CATG	2 cut(s)	107, 170
NlaIV	GGNNCC	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	45
PpuMI	RGGWCCY	2 cut(s)	378, 431
PshBI	ATTAAT	1 cut(s)	120
Psp5II	RGGWCCY	2 cut(s)	378, 431
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	3 cut(s)	378, 431, 440
PspPPI	RGGWCCY	2 cut(s)	378, 431
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	140, 314
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	2 cut(s)	63, 96
SaqAI	TTAA	4 cut(s)	17, 120, 393, 460
Sau3AI	GATC	4 cut(s)	4, 55, 140, 314
Sau96I	GGNCC	3 cut(s)	378, 431, 440
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	6 cut(s)	35, 212, 309, 383, 436, 450
SfaNI	GCATC	1 cut(s)	179
SinI	GGWCC	2 cut(s)	378, 431
SmiMI	CAYNNNNRTG	2 cut(s)	63, 96
Sse9I	AATT	3 cut(s)	269, 360, 394
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	39
TasI	AATT	3 cut(s)	269, 360, 394
TatI	WGTACW	1 cut(s)	383
Tru1I	TTAA	4 cut(s)	17, 120, 393, 460
Tru9I	TTAA	4 cut(s)	17, 120, 393, 460
TspDTI	ATGAA	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	378, 431
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	317
XspI	CTAG	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.