Rh5BG545800

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015589
Physical Location & Seq
Reverse (-)
86786464 .. 86788081
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG545800.1

Sequence Viewer

Length: 540 bp
ATGGATCAAGTTGACTTAACGCTGAAACTAAGCTTACCGTCTATCCAGGATGACGATCATCCTGATGAAGTTCCTCAGGATGTTCCTCAACATCTCAATGCACATGGTTCTTACGATATTAATCAGGGCTTGGGTTTTGGATCTGCTGTATCTGCTGGCAATGCTCATGCGTCACAATACTCTGCAATGAGTATAACTGACTTCCAGAGGTCAGTCTCTGTTACAGAAAGAAGGCAACAGAGACTTACTCCCCCAACAGAAATGAGAGAATTTTGTGTCCTAAATGTATCCCACAACAAAGGCAAGGTCGGGGGATCTAGAAAAAAGAACACAACTCGCTGTCAACGCCCTGCGCCAAAAATTGATAATCAGAATAGGACCTGTACAAACTTTAATTGTCGGGTCAGCGAAACTCCAATGTGGCGTAGAGGACCTCTGGGGCCAAAGACACTTTGCAACGCTTGCGGGATCAAGTATCGCAAGCTCAAGCTCAAGGAGAAGGAAGGGGAGGGAACTACAGGAGAGAGCAGCTCTAATTGA

Protein Analysis

179

Amino Acids

19.83

Weight (kDa)

9.1

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 132 - 164 2e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 465
AclWI GGATC 4 cut(s) 12, 148, 322, 476
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 385
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 4 cut(s) 33, 484, 490, 531
AluI AGCT 4 cut(s) 33, 484, 490, 531
Alw26I GTCTC 2 cut(s) 220, 235
AlwI GGATC 4 cut(s) 12, 148, 322, 476
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 528
ApoI RAATTY 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AseI ATTAAT 1 cut(s) 120
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 378, 431, 440
AvaII GGWCC 2 cut(s) 378, 431
AxyI CCTNAGG 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 220, 235
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 516
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 1 cut(s) 529
BlsI GCNGC 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 2 cut(s) 378, 431
BmgT120I GGNCC 3 cut(s) 378, 431, 440
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 1 cut(s) 47
BplI GAGNNNNNCTC 3 cut(s) 232, 264, 515
BpuEI CTTGAG 2 cut(s) 470, 476
BsaBI GATNNNNATC 2 cut(s) 54, 120
Bse21I CCTNAGG 1 cut(s) 75
Bse3DI GCAATG 2 cut(s) 166, 192
Bse8I GATNNNNATC 2 cut(s) 54, 120
BseBI CCWGG 1 cut(s) 47
BseGI GGATG 3 cut(s) 55, 58, 85
BseJI GATNNNNATC 2 cut(s) 54, 120
BseMI GCAATG 2 cut(s) 166, 192
BseMII CTCAG 1 cut(s) 89
BshFI GGCC 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 220, 235
BsnI GGCC 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 383
Bsp143I GATC 5 cut(s) 4, 55, 140, 314, 468
BspACI CCGC 1 cut(s) 465
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 4 cut(s) 12, 148, 322, 476
BsrDI GCAATG 2 cut(s) 166, 192
BsrGI TGTACA 1 cut(s) 383
BssMI GATC 5 cut(s) 4, 55, 140, 314, 468
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 462
BstAUI TGTACA 1 cut(s) 383
BstC8I GCNNGC 3 cut(s) 157, 463, 482
BstDEI CTNAG 2 cut(s) 29, 75
BstF5I GGATG 3 cut(s) 55, 58, 85
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 5 cut(s) 7, 58, 143, 317, 471
BstMAI GTCTC 2 cut(s) 220, 235
BstMBI GATC 5 cut(s) 4, 55, 140, 314, 468
BstMWI GCNNNNNNNGC 4 cut(s) 152, 161, 345, 462
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 140, 314
BstYI RGATCY 2 cut(s) 140, 314
Bsu36I CCTNAGG 1 cut(s) 75
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 3 cut(s) 55, 58, 85
Cac8I GCNNGC 3 cut(s) 157, 463, 482
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 378, 431, 440
CseI GACGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 384
CviAII CATG 2 cut(s) 104, 167
CviJI RGCY 6 cut(s) 33, 129, 442, 484, 490, 531
CviKI_1 RGCY 6 cut(s) 33, 129, 442, 484, 490, 531
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 2 cut(s) 29, 75
DpnI GATC 5 cut(s) 6, 57, 142, 316, 470
DpnII GATC 5 cut(s) 4, 55, 140, 314, 468
Eco47I GGWCC 2 cut(s) 378, 431
Eco81I CCTNAGG 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 378, 431
EcoRII CCWGG 1 cut(s) 45
FaeI CATG 2 cut(s) 107, 170
FaiI YATR 3 cut(s) 105, 168, 194
FatI CATG 2 cut(s) 103, 166
FauI CCCGC 1 cut(s) 458
Fnu4HI GCNGC 1 cut(s) 529
FokI GGATG 3 cut(s) 45, 62, 92
Fsp4HI GCNGC 1 cut(s) 529
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 529
HaeIII GGCC 1 cut(s) 442
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 107, 170
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 2 cut(s) 13, 344
HindII GTYRAC 2 cut(s) 13, 344
HindIII AAGCTT 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 13, 344
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 4 cut(s) 62, 77, 205, 318
Hpy8I GTNNAC 2 cut(s) 13, 344
HpyAV CCTTC 3 cut(s) 225, 493, 497
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 101, 185, 456
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 161, 345, 462
HpyF3I CTNAG 2 cut(s) 29, 75
Hsp92II CATG 2 cut(s) 107, 170
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 5 cut(s) 4, 55, 140, 314, 468
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 171, 220
MalI GATC 5 cut(s) 6, 57, 142, 316, 470
MboI GATC 5 cut(s) 4, 55, 140, 314, 468
MflI RGATCY 2 cut(s) 140, 314
MluCI AATT 4 cut(s) 269, 360, 394, 535
MnlI CCTC 6 cut(s) 84, 96, 201, 422, 444, 502
MseI TTAA 3 cut(s) 17, 120, 393
MslI CAYNNNNRTG 2 cut(s) 63, 96
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 152, 161, 345, 462
NdeII GATC 5 cut(s) 4, 55, 140, 314, 468
NlaIII CATG 2 cut(s) 107, 170
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 171
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 1 cut(s) 530
PpuMI RGGWCCY 2 cut(s) 378, 431
PshBI ATTAAT 1 cut(s) 120
Psp5II RGGWCCY 2 cut(s) 378, 431
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 3 cut(s) 378, 431, 440
PspPPI RGGWCCY 2 cut(s) 378, 431
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 2 cut(s) 140, 314
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 2 cut(s) 63, 96
SaqAI TTAA 3 cut(s) 17, 120, 393
SatI GCNGC 1 cut(s) 529
Sau3AI GATC 5 cut(s) 4, 55, 140, 314, 468
Sau96I GGNCC 3 cut(s) 378, 431, 440
ScrFI CCNGG 1 cut(s) 47
SetI ASST 8 cut(s) 35, 212, 309, 383, 436, 486, 492, 533
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 2 cut(s) 378, 431
SmiMI CAYNNNNRTG 2 cut(s) 63, 96
SmlI CTYRAG 2 cut(s) 485, 491
SmoI CTYRAG 2 cut(s) 485, 491
Sse9I AATT 4 cut(s) 269, 360, 394, 535
SsiI CCGC 1 cut(s) 465
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 39
TasI AATT 4 cut(s) 269, 360, 394, 535
TatI WGTACW 1 cut(s) 383
Tru1I TTAA 3 cut(s) 17, 120, 393
Tru9I TTAA 3 cut(s) 17, 120, 393
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 1 cut(s) 528
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 378, 431
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 269
XbaI TCTAGA 1 cut(s) 317
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.