Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Reverse (-)

85769237 .. 85769641

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG556000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAGGAAGTTTTGTGTCATTAACGTCTCACACAACAAAGCCAAGGTCGGGGGATCTAGAAAAAAGAAGACAACACGCTGTCAACGCCCTGCACCAAAAACTGATGATCAGAATAGGACCTGTACAAATTTTAATTGTCGGGTCAGCGAAACTCCAATGTGGCGTAGAGGACCTCTGGGGTCAAAGACACTTTGCAACGCTTGTGGGATCAAGTATCGCAAGCTCAAGCTCAAGGAGGAACAAGGGGAGGGAACTTCAGGAGAGGACAGCTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

92

Amino Acids

10.35

Weight (kDa)

10.0

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	45 - 77	1.1e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	61, 215
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	48
AluBI	AGCT	3 cut(s)	223, 229, 270
AluI	AGCT	3 cut(s)	223, 229, 270
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	2 cut(s)	61, 215
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspS9I	GGNCC	2 cut(s)	117, 170
AvaII	GGWCC	2 cut(s)	117, 170
BbsI	GAAGAC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	57
Bme18I	GGWCC	2 cut(s)	117, 170
BmgT120I	GGNCC	2 cut(s)	117, 170
BpiI	GAAGAC	1 cut(s)	74
BplI	GAGNNNNNCTC	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	209, 215
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	53, 106, 207
BspPI	GGATC	2 cut(s)	61, 215
BsrGI	TGTACA	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	53, 106, 207
BssT1I	CCWWGG	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	56, 109, 210
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	53, 106, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	117, 170
Csp6I	GTAC	1 cut(s)	123
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviJI	RGCY	4 cut(s)	41, 223, 229, 270
CviKI_1	RGCY	4 cut(s)	41, 223, 229, 270
CviQI	GTAC	1 cut(s)	123
DpnI	GATC	3 cut(s)	55, 108, 209
DpnII	GATC	3 cut(s)	53, 106, 207
Eco130I	CCWWGG	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	117, 170
Eco57I	CTGAAG	1 cut(s)	240
EcoO109I	RGGNCCY	2 cut(s)	117, 170
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	106
FspBI	CTAG	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	57, 258
Hpy8I	GTNNAC	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	92, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	53, 106, 207
LpnPI	CCDG	4 cut(s)	102, 133, 161, 243
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	24
MalI	GATC	3 cut(s)	55, 108, 209
MboI	GATC	3 cut(s)	53, 106, 207
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	2 cut(s)	127, 133
MnlI	CCTC	5 cut(s)	161, 183, 229, 241, 256
MseI	TTAA	2 cut(s)	21, 132
MwoI	GCNNNNNNNGC	1 cut(s)	84
NdeII	GATC	3 cut(s)	53, 106, 207
PpuMI	RGGWCCY	2 cut(s)	117, 170
Psp5II	RGGWCCY	2 cut(s)	117, 170
PspPI	GGNCC	2 cut(s)	117, 170
PspPPI	RGGWCCY	2 cut(s)	117, 170
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	21, 132
Sau3AI	GATC	3 cut(s)	53, 106, 207
Sau96I	GGNCC	2 cut(s)	117, 170
SetI	ASST	7 cut(s)	27, 48, 122, 175, 225, 231, 272
SinI	GGWCC	2 cut(s)	117, 170
SmlI	CTYRAG	2 cut(s)	224, 230
SmoI	CTYRAG	2 cut(s)	224, 230
Sse9I	AATT	2 cut(s)	127, 133
SspMI	CTAG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	42
TaiI	ACGT	1 cut(s)	27
TasI	AATT	2 cut(s)	127, 133
TatI	WGTACW	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	21, 132
Tru9I	TTAA	2 cut(s)	21, 132
VpaK11BI	GGWCC	2 cut(s)	117, 170
XapI	RAATTY	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	56
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.