Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000359.1

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Forward (+)

9464 .. 11081

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000359.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggatcaagttgacttaacgctgaaactaagcttaccgtctatccaggatgacgatcatcctgatgaagttcctcaggatgttcctcaacatctcaatgcacatggttcttacgatattaatcagggcttgggttttggatctgctgtatctgctggcaatgctcatgcgtcacaatactctgcaatgagtataactgacttccagaggtcagtctctgttacagaaagaaggcaacagagacttactcccccaacagaaatgagagaattttgtgtcctaaatgtatcccacaacaaaggcaaggtcgggggatctagaaaaaagaacacaactcgctgtcaacgccctgcgccaaaaattgataatcagaataggacctgtacaaactttaattgtcgggtcagcgaaactccaatgtggcgtagaggacctctggggccaaagacactttgcaacgcttgcgggatcaagtatcgcaagctcaagctcaaggagaaggaaggggagggaactacaggagagggcagctctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

179

Amino Acids

19.8

Weight (kDa)

9.1

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	4 cut(s)	12, 148, 322, 476
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	33, 484, 490, 531
AluI	AGCT	4 cut(s)	33, 484, 490, 531
Alw26I	GTCTC	2 cut(s)	220, 235
AlwI	GGATC	4 cut(s)	12, 148, 322, 476
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	269
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	378, 431, 440
AvaII	GGWCC	2 cut(s)	378, 431
AxyI	CCTNAGG	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	220, 235
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	2 cut(s)	378, 431
BmgT120I	GGNCC	3 cut(s)	378, 431, 440
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	47
BplI	GAGNNNNNCTC	3 cut(s)	232, 264, 515
BpuEI	CTTGAG	2 cut(s)	470, 476
BsaBI	GATNNNNATC	2 cut(s)	54, 120
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	2 cut(s)	166, 192
Bse8I	GATNNNNATC	2 cut(s)	54, 120
BseBI	CCWGG	1 cut(s)	47
BseGI	GGATG	3 cut(s)	55, 58, 85
BseJI	GATNNNNATC	2 cut(s)	54, 120
BseMI	GCAATG	2 cut(s)	166, 192
BseMII	CTCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	442
BsmAI	GTCTC	2 cut(s)	220, 235
BsnI	GGCC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	383
Bsp143I	GATC	5 cut(s)	4, 55, 140, 314, 468
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	4 cut(s)	12, 148, 322, 476
BsrDI	GCAATG	2 cut(s)	166, 192
BsrGI	TGTACA	1 cut(s)	383
BssMI	GATC	5 cut(s)	4, 55, 140, 314, 468
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	157, 463, 482
BstDEI	CTNAG	2 cut(s)	29, 75
BstF5I	GGATG	3 cut(s)	55, 58, 85
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	5 cut(s)	7, 58, 143, 317, 471
BstMAI	GTCTC	2 cut(s)	220, 235
BstMBI	GATC	5 cut(s)	4, 55, 140, 314, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 161, 345, 462
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	140, 314
BstYI	RGATCY	2 cut(s)	140, 314
Bsu36I	CCTNAGG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	55, 58, 85
Cac8I	GCNNGC	3 cut(s)	157, 463, 482
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	378, 431, 440
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	2 cut(s)	104, 167
CviJI	RGCY	6 cut(s)	33, 129, 442, 484, 490, 531
CviKI_1	RGCY	6 cut(s)	33, 129, 442, 484, 490, 531
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	2 cut(s)	29, 75
DpnI	GATC	5 cut(s)	6, 57, 142, 316, 470
DpnII	GATC	5 cut(s)	4, 55, 140, 314, 468
Eco47I	GGWCC	2 cut(s)	378, 431
Eco81I	CCTNAGG	1 cut(s)	75
EcoO109I	RGGNCCY	2 cut(s)	378, 431
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	107, 170
FaiI	YATR	3 cut(s)	105, 168, 194
FatI	CATG	2 cut(s)	103, 166
FauI	CCCGC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	3 cut(s)	45, 62, 92
Fsp4HI	GCNGC	1 cut(s)	529
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	442
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	107, 170
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	13, 344
HindII	GTYRAC	2 cut(s)	13, 344
HindIII	AAGCTT	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	13, 344
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	4 cut(s)	62, 77, 205, 318
Hpy8I	GTNNAC	2 cut(s)	13, 344
HpyAV	CCTTC	3 cut(s)	225, 493, 497
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	101, 185, 456
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 161, 345, 462
HpyF3I	CTNAG	2 cut(s)	29, 75
Hsp92II	CATG	2 cut(s)	107, 170
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	5 cut(s)	4, 55, 140, 314, 468
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	171, 220
MalI	GATC	5 cut(s)	6, 57, 142, 316, 470
MboI	GATC	5 cut(s)	4, 55, 140, 314, 468
MflI	RGATCY	2 cut(s)	140, 314
MluCI	AATT	4 cut(s)	269, 360, 394, 535
MnlI	CCTC	7 cut(s)	84, 96, 201, 422, 444, 502, 517
MseI	TTAA	3 cut(s)	17, 120, 393
MslI	CAYNNNNRTG	2 cut(s)	63, 96
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	4 cut(s)	152, 161, 345, 462
NdeII	GATC	5 cut(s)	4, 55, 140, 314, 468
NlaIII	CATG	2 cut(s)	107, 170
NlaIV	GGNNCC	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	530
PpuMI	RGGWCCY	2 cut(s)	378, 431
PshBI	ATTAAT	1 cut(s)	120
Psp5II	RGGWCCY	2 cut(s)	378, 431
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	441
PspPI	GGNCC	3 cut(s)	378, 431, 440
PspPPI	RGGWCCY	2 cut(s)	378, 431
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	140, 314
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	2 cut(s)	63, 96
SaqAI	TTAA	3 cut(s)	17, 120, 393
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	5 cut(s)	4, 55, 140, 314, 468
Sau96I	GGNCC	3 cut(s)	378, 431, 440
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	8 cut(s)	35, 212, 309, 383, 436, 486, 492, 533
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	378, 431
SmiMI	CAYNNNNRTG	2 cut(s)	63, 96
SmlI	CTYRAG	2 cut(s)	485, 491
SmoI	CTYRAG	2 cut(s)	485, 491
Sse9I	AATT	4 cut(s)	269, 360, 394, 535
SsiI	CCGC	1 cut(s)	465
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	39
TasI	AATT	4 cut(s)	269, 360, 394, 535
TatI	WGTACW	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	17, 120, 393
Tru9I	TTAA	3 cut(s)	17, 120, 393
TseFI	GTSAC	1 cut(s)	171
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	378, 431
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	317
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.