Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Reverse (-)

85967205 .. 85968781

Gene Structure 1577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATTCGCCTGACTTAACACTTGGACTCAGTTTACCGTGTGTCCAGGATGATCACAACAATGATCATCCTGAAGTTCCACAGCCTTTCAGTGCACCTGGTGCTTCCAACATTATTCAGGGCTTCGGTTTTGGAGCAGCTGCTAGCAATAATCCTCATGCGACGCAATACTCTGTAATGAGTATAACTGAATTCCAGAGGTCAGTCTCAGTAACCGAGATAAGGCAACATATTCTACCTCCCCCACCAGAAATGAGCAAGTTTTGTGTCATTAACGTCTCACACAACAAAACCAAGATCGGGGGATCTAGAAAAAAGAAGACAACACGCTGTCAACGCCCTGCACCAAAAACTGATGATCAGAATAGGACCTGTACAAATTTTAATTGTCGGGTCAGCGAAACTCCAATGTGGCGTAGAGGACCTCTGGGGTCAAAGACACTTTGCAACGCTTGTGGGATCAAGTATCGCAAGCTCAAGCTCAAGGAGGAACAAGGGGAGGGAACTTCAGGAGAGGGTAGCTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

177

Amino Acids

19.27

Weight (kDa)

9.03

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	129 - 161	3.6e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	313, 467
AcsI	RAATTY	2 cut(s)	191, 379
AcuI	CTGAAG	2 cut(s)	93, 492
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	222, 300
AjnI	CCWGG	2 cut(s)	45, 97
AluBI	AGCT	4 cut(s)	140, 475, 481, 522
AluI	AGCT	4 cut(s)	140, 475, 481, 522
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	211, 283
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	313, 467
ApaLI	GTGCAC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	137, 140
ApoI	RAATTY	2 cut(s)	191, 379
AspS9I	GGNCC	2 cut(s)	369, 422
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	369, 422
BaeGI	GKGCMC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	127, 149
BciT130I	CCWGG	2 cut(s)	47, 99
BclI	TGATCA	3 cut(s)	52, 64, 358
BcoDI	GTCTC	2 cut(s)	211, 283
BfaI	CTAG	2 cut(s)	144, 309
BisI	GCNGC	2 cut(s)	138, 141
BlsI	GCNGC	2 cut(s)	139, 142
Bme1390I	CCNGG	2 cut(s)	47, 99
Bme18I	GGWCC	2 cut(s)	369, 422
BmgT120I	GGNCC	2 cut(s)	369, 422
BmrFI	CCNGG	2 cut(s)	47, 99
BmtI	GCTAGC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	326
BplI	GAGNNNNNCTC	1 cut(s)	506
BpuEI	CTTGAG	2 cut(s)	461, 467
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 300
BseBI	CCWGG	2 cut(s)	47, 99
BseGI	GGATG	2 cut(s)	55, 67
BseLI	CCNNNNNNNGG	2 cut(s)	222, 300
BseMII	CTCAG	2 cut(s)	43, 222
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	127, 149
BsgI	GTGCAG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	222, 300
BsmAI	GTCTC	2 cut(s)	211, 283
BsmBI	CGTCTC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	374
Bsp143I	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
BspCNI	CTCAG	2 cut(s)	42, 221
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	313, 467
BsrGI	TGTACA	1 cut(s)	374
BssMI	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
Bst2UI	CCWGG	2 cut(s)	47, 99
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	145, 473
BstDEI	CTNAG	2 cut(s)	29, 208
BstF5I	GGATG	2 cut(s)	55, 67
BstKTI	GATC	6 cut(s)	55, 67, 300, 308, 361, 462
BstMAI	GTCTC	2 cut(s)	211, 283
BstMBI	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 336
BstNI	CCWGG	2 cut(s)	47, 99
BstSCI	CCNGG	2 cut(s)	45, 97
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	127, 149
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	55, 67
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	145, 473
Cfr13I	GGNCC	2 cut(s)	369, 422
CseI	GACGC	1 cut(s)	172
CsiI	ACCWGGT	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	375
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	6 cut(s)	85, 123, 140, 475, 481, 522
CviKI_1	RGCY	6 cut(s)	85, 123, 140, 475, 481, 522
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	2 cut(s)	29, 208
DpnI	GATC	6 cut(s)	54, 66, 299, 307, 360, 461
DpnII	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
DraIII	CACNNNGTG	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	369, 422
Eco57I	CTGAAG	2 cut(s)	93, 492
EcoO109I	RGGNCCY	2 cut(s)	369, 422
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	45, 97
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	1 cut(s)	161
FaiI	YATR	3 cut(s)	159, 185, 231
FatI	CATG	1 cut(s)	157
FbaI	TGATCA	3 cut(s)	52, 64, 358
Fnu4HI	GCNGC	2 cut(s)	138, 141
FokI	GGATG	2 cut(s)	54, 62
Fsp4HI	GCNGC	2 cut(s)	138, 141
FspBI	CTAG	2 cut(s)	144, 309
GluI	GCNGC	2 cut(s)	138, 141
HgaI	GACGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HinfI	GANTC	2 cut(s)	5, 27
Hpy166II	GTNNAC	3 cut(s)	35, 95, 335
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	4 cut(s)	71, 196, 309, 510
Hpy8I	GTNNAC	3 cut(s)	35, 95, 335
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	95, 344, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 336
HpyF3I	CTNAG	2 cut(s)	29, 208
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	161
Ksp22I	TGATCA	3 cut(s)	52, 64, 358
Kzo9I	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	127, 149
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	2 cut(s)	144, 309
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	6 cut(s)	54, 66, 299, 307, 360, 461
MboI	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
MboII	GAAGA	1 cut(s)	331
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	3 cut(s)	191, 379, 385
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	165, 192, 249, 413, 435, 481, 493, 508
MseI	TTAA	3 cut(s)	17, 273, 384
MslI	CAYNNNNRTG	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	47, 99
MvaI	CCWGG	2 cut(s)	47, 99
MwoI	GCNNNNNNNGC	2 cut(s)	101, 336
NdeII	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	139, 142
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	2 cut(s)	369, 422
Psp5II	RGGWCCY	2 cut(s)	369, 422
Psp6I	CCWGG	2 cut(s)	45, 97
PspGI	CCWGG	2 cut(s)	45, 97
PspPI	GGNCC	2 cut(s)	369, 422
PspPPI	RGGWCCY	2 cut(s)	369, 422
PsuI	RGATCY	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	17, 273, 384
SatI	GCNGC	2 cut(s)	138, 141
Sau3AI	GATC	6 cut(s)	52, 64, 297, 305, 358, 459
Sau96I	GGNCC	2 cut(s)	369, 422
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	47, 99
SduI	GDGCHC	1 cut(s)	97
SexAI	ACCWGGT	1 cut(s)	97
SinI	GGWCC	2 cut(s)	369, 422
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	2 cut(s)	476, 482
SmoI	CTYRAG	2 cut(s)	476, 482
Sse9I	AATT	3 cut(s)	191, 379, 385
SspMI	CTAG	2 cut(s)	144, 309
StyD4I	CCNGG	2 cut(s)	45, 97
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	279
TasI	AATT	3 cut(s)	191, 379, 385
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	17, 273, 384
Tru9I	TTAA	3 cut(s)	17, 273, 384
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	137, 140
TspRI	CASTG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	93
VpaK11BI	GGWCC	2 cut(s)	369, 422
XapI	RAATTY	2 cut(s)	191, 379
XbaI	TCTAGA	1 cut(s)	308
XspI	CTAG	2 cut(s)	144, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.