Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015589

Physical Location & Seq

Genomic Coordinates Forward (+)

3355151 .. 3363092

Gene Structure 7942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGTATAACTGAATTCCAGAGGTCAGTCTCAGTAACCGAGATAAGGCAACATATTCTACCTCTCCCAACAGAAATGAGGAAGTTTTGTGTCATTAACGTCTCACACAACAAAGCCAAGGTCGGGGGATCTAGAAAAAAGAAGACAACACGCTGTCAACGCCCTGCACCAAAAACTGATGATCAGAATAGGACCTGTACAAATTTTAATTGTCGGGTCAGCGAAACTCCAATGTGGCGTAGAGGACCTCTGGGACACTTTGCAACTCTTGTGGGAACAAGTATCGCAAGCTCAAGCTCAAGGAGGAACAAGGGGAGGGAACTTGAGGAAAGGGCAGCTCTAACTGATCAGAAAGATGCACAGGAGAATCCTGATTCGGCCACTATAGAAAAACTACTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

10.03

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44220 FvH4_3g44240
rosa_laevigata	RLG00000036869 RLG00000036870
rosa_multiflora	Rmu_sc0000359.1_g000002 Rmu_sc0021850.1_g000001
rosa_roxburghii	Rroxscaffold_1G00002800 Rroxscaffold_1G00002810
rosa_rugosa	Rorug05G0470300 Rorug05G0470400
rosa_samantha	Rh5AG523700 Rh5BG545800 Rh5CG569000 Rh5DG488600 Rh5DG555900 Rh5DG556000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	14, 202
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	45, 123
AluBI	AGCT	3 cut(s)	291, 297, 338
AluI	AGCT	3 cut(s)	291, 297, 338
Alw26I	GTCTC	2 cut(s)	34, 106
AlwI	GGATC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	14, 202
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspS9I	GGNCC	2 cut(s)	192, 245
AvaII	GGWCC	2 cut(s)	192, 245
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	347
BclI	TGATCA	2 cut(s)	181, 346
BcoDI	GTCTC	2 cut(s)	34, 106
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme18I	GGWCC	2 cut(s)	192, 245
BmgT120I	GGNCC	2 cut(s)	192, 245
BmsI	GCATC	1 cut(s)	346
BpiI	GAAGAC	1 cut(s)	149
BpuEI	CTTGAG	3 cut(s)	277, 283, 344
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 123
Bse1I	ACTGG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	45, 123
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	380
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	45, 123
BsmAI	GTCTC	2 cut(s)	34, 106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	128, 181, 346
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	44
BspPI	GGATC	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	128, 181, 346
BssT1I	CCWWGG	1 cut(s)	117
BstAUI	TGTACA	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	131, 184, 349
BstMAI	GTCTC	2 cut(s)	34, 106
BstMBI	GATC	3 cut(s)	128, 181, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	192, 245
Csp6I	GTAC	1 cut(s)	198
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviJI	RGCY	5 cut(s)	116, 291, 297, 338, 380
CviKI_1	RGCY	5 cut(s)	116, 291, 297, 338, 380
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	3 cut(s)	130, 183, 348
DpnII	GATC	3 cut(s)	128, 181, 346
EaeI	YGGCCR	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	192, 245
EcoO109I	RGGNCCY	2 cut(s)	192, 245
EcoRI	GAATTC	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	106
FaiI	YATR	4 cut(s)	8, 54, 386, 403
FaqI	GGGAC	1 cut(s)	267
FbaI	TGATCA	2 cut(s)	181, 346
Fnu4HI	GCNGC	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	367, 374
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	186, 351
Hpy188III	TCNNGA	3 cut(s)	19, 132, 371
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	167, 263, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	99
Ksp22I	TGATCA	2 cut(s)	181, 346
Kzo9I	GATC	3 cut(s)	128, 181, 346
LpnPI	CCDG	7 cut(s)	32, 177, 208, 236, 347, 383, 384
Lsp1109I	GCAGC	1 cut(s)	347
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	130, 183, 348
MboI	GATC	3 cut(s)	128, 181, 346
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	3 cut(s)	14, 202, 208
MnlI	CCTC	8 cut(s)	15, 72, 72, 236, 258, 297, 309, 319
MseI	TTAA	2 cut(s)	96, 207
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	3 cut(s)	128, 181, 346
PfeI	GAWTC	2 cut(s)	367, 374
PkrI	GCNGC	1 cut(s)	337
PpuMI	RGGWCCY	2 cut(s)	192, 245
Psp5II	RGGWCCY	2 cut(s)	192, 245
PspPI	GGNCC	2 cut(s)	192, 245
PspPPI	RGGWCCY	2 cut(s)	192, 245
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	96, 207
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	128, 181, 346
Sau96I	GGNCC	2 cut(s)	192, 245
SetI	ASST	9 cut(s)	26, 64, 102, 123, 197, 250, 293, 299, 340
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	2 cut(s)	192, 245
SmlI	CTYRAG	3 cut(s)	292, 298, 323
SmoI	CTYRAG	3 cut(s)	292, 298, 323
Sse9I	AATT	3 cut(s)	14, 202, 208
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	117
TaiI	ACGT	1 cut(s)	102
TasI	AATT	3 cut(s)	14, 202, 208
TatI	WGTACW	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	367, 374
Tru1I	TTAA	2 cut(s)	96, 207
Tru9I	TTAA	2 cut(s)	96, 207
TseI	GCWGC	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	192, 245
XapI	RAATTY	2 cut(s)	14, 202
XbaI	TCTAGA	1 cut(s)	131
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.