No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g44242 |
| rosa_chinensis | RchiOBHm_Chr1g0375541 |
| rosa_multiflora | Rmu_co8136822.1_g000001 Rmu_co8219862.1_g000001 Rmu_sc0003275.1_g000022 Rmu_sc0005416.1_g000026 Rmu_sc0041306.1_g000001 Rmu_sc0041306.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00043020 Rroxscaffold_5G00374040 |
| rosa_samantha | Rh5AG257200 Rh5BG259800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 150 |
| AclWI | GGATC | 1 cut(s) | 188 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 17 |
| AgsI | TTSAA | 4 cut(s) | 122, 342, 356, 470 |
| AjnI | CCWGG | 2 cut(s) | 94, 447 |
| AluBI | AGCT | 3 cut(s) | 282, 287, 431 |
| AluI | AGCT | 3 cut(s) | 282, 287, 431 |
| Alw26I | GTCTC | 1 cut(s) | 212 |
| AlwI | GGATC | 1 cut(s) | 188 |
| ApeKI | GCWGC | 3 cut(s) | 146, 168, 305 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 484, 516 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 327 |
| AsuHPI | GGTGA | 1 cut(s) | 222 |
| BbvI | GCAGC | 3 cut(s) | 158, 180, 292 |
| BccI | CCATC | 1 cut(s) | 235 |
| BciT130I | CCWGG | 2 cut(s) | 96, 449 |
| BciVI | GTATCC | 1 cut(s) | 249 |
| BcoDI | GTCTC | 1 cut(s) | 212 |
| BfaI | CTAG | 1 cut(s) | 320 |
| BfuI | GTATCC | 1 cut(s) | 249 |
| BisI | GCNGC | 4 cut(s) | 147, 150, 169, 306 |
| BlpI | GCTNAGC | 1 cut(s) | 283 |
| BlsI | GCNGC | 4 cut(s) | 148, 151, 170, 307 |
| Bme1390I | CCNGG | 2 cut(s) | 96, 449 |
| BmiI | GGNNCC | 1 cut(s) | 330 |
| BmrFI | CCNGG | 2 cut(s) | 96, 449 |
| BmsI | GCATC | 1 cut(s) | 452 |
| BpmI | CTGGAG | 1 cut(s) | 447 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 283 |
| BsaJI | CCNNGG | 1 cut(s) | 447 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 17 |
| Bse1I | ACTGG | 1 cut(s) | 332 |
| BseBI | CCWGG | 2 cut(s) | 96, 449 |
| BseDI | CCNNGG | 1 cut(s) | 447 |
| BseGI | GGATG | 1 cut(s) | 443 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BseMII | CTCAG | 2 cut(s) | 225, 297 |
| BseNI | ACTGG | 1 cut(s) | 332 |
| BseXI | GCAGC | 3 cut(s) | 158, 180, 292 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BsmAI | GTCTC | 1 cut(s) | 212 |
| Bsp143I | GATC | 1 cut(s) | 193 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 283 |
| BspACI | CCGC | 1 cut(s) | 150 |
| BspCNI | CTCAG | 2 cut(s) | 224, 296 |
| BspHI | TCATGA | 2 cut(s) | 70, 483 |
| BspLI | GGNNCC | 1 cut(s) | 330 |
| BspPI | GGATC | 1 cut(s) | 188 |
| BsrI | ACTGG | 1 cut(s) | 332 |
| BssECI | CCNNGG | 1 cut(s) | 447 |
| BssMI | GATC | 1 cut(s) | 193 |
| Bst2UI | CCWGG | 2 cut(s) | 96, 449 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstDEI | CTNAG | 4 cut(s) | 43, 203, 211, 283 |
| BstF5I | GGATG | 1 cut(s) | 443 |
| BstKTI | GATC | 1 cut(s) | 196 |
| BstMAI | GTCTC | 1 cut(s) | 212 |
| BstMBI | GATC | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 137, 146, 174 |
| BstNI | CCWGG | 2 cut(s) | 96, 449 |
| BstSCI | CCNGG | 2 cut(s) | 94, 447 |
| BstV1I | GCAGC | 3 cut(s) | 158, 180, 292 |
| BsuI | GTATCC | 1 cut(s) | 249 |
| BtsCI | GGATG | 1 cut(s) | 443 |
| BtsIMutI | CAGTG | 2 cut(s) | 339, 369 |
| CciI | TCATGA | 2 cut(s) | 70, 483 |
| CsiI | ACCWGGT | 1 cut(s) | 94 |
| CviAII | CATG | 3 cut(s) | 71, 398, 484 |
| CviJI | RGCY | 5 cut(s) | 149, 282, 287, 305, 431 |
| CviKI_1 | RGCY | 5 cut(s) | 149, 282, 287, 305, 431 |
| DdeI | CTNAG | 4 cut(s) | 43, 203, 211, 283 |
| DpnI | GATC | 1 cut(s) | 195 |
| DpnII | GATC | 1 cut(s) | 193 |
| Eco32I | GATATC | 1 cut(s) | 276 |
| EcoRII | CCWGG | 2 cut(s) | 94, 447 |
| EcoRV | GATATC | 1 cut(s) | 276 |
| EcoT22I | ATGCAT | 2 cut(s) | 118, 445 |
| FaeI | CATG | 3 cut(s) | 74, 401, 487 |
| FatI | CATG | 3 cut(s) | 70, 397, 483 |
| FauNDI | CATATG | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 4 cut(s) | 147, 150, 169, 306 |
| FokI | GGATG | 1 cut(s) | 430 |
| Fsp4HI | GCNGC | 4 cut(s) | 147, 150, 169, 306 |
| FspBI | CTAG | 1 cut(s) | 320 |
| GluI | GCNGC | 4 cut(s) | 147, 150, 169, 306 |
| GsuI | CTGGAG | 1 cut(s) | 447 |
| Hin1II | CATG | 3 cut(s) | 74, 401, 487 |
| HinfI | GANTC | 5 cut(s) | 38, 215, 466, 480, 487 |
| HphI | GGTGA | 1 cut(s) | 222 |
| Hpy166II | GTNNAC | 2 cut(s) | 26, 479 |
| Hpy188I | TCNGA | 3 cut(s) | 37, 214, 220 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 253, 320, 484 |
| Hpy8I | GTNNAC | 2 cut(s) | 26, 479 |
| HpyAV | CCTTC | 1 cut(s) | 42 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 5 cut(s) | 92, 116, 163, 443, 456 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 137, 146, 174 |
| HpyF3I | CTNAG | 4 cut(s) | 43, 203, 211, 283 |
| Hsp92II | CATG | 3 cut(s) | 74, 401, 487 |
| Kzo9I | GATC | 1 cut(s) | 193 |
| LmnI | GCTCC | 1 cut(s) | 428 |
| LpnPI | CCDG | 6 cut(s) | 81, 108, 345, 411, 434, 461 |
| Lsp1109I | GCAGC | 3 cut(s) | 158, 180, 292 |
| LweI | GCATC | 1 cut(s) | 452 |
| MabI | ACCWGGT | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 320 |
| MaeIII | GTNAC | 3 cut(s) | 79, 98, 334 |
| MalI | GATC | 1 cut(s) | 195 |
| MboI | GATC | 1 cut(s) | 193 |
| MluCI | AATT | 4 cut(s) | 313, 370, 457, 492 |
| MlyI | GAGTC | 2 cut(s) | 474, 481 |
| Mph1103I | ATGCAT | 2 cut(s) | 118, 445 |
| MroXI | GAANNNNTTC | 1 cut(s) | 327 |
| MseI | TTAA | 2 cut(s) | 291, 547 |
| MslI | CAYNNNNRTG | 1 cut(s) | 75 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MspR9I | CCNGG | 2 cut(s) | 96, 449 |
| MvaI | CCWGG | 2 cut(s) | 96, 449 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 137, 146, 174 |
| NdeI | CATATG | 1 cut(s) | 504 |
| NdeII | GATC | 1 cut(s) | 193 |
| NlaIII | CATG | 3 cut(s) | 74, 401, 487 |
| NlaIV | GGNNCC | 1 cut(s) | 330 |
| NmuCI | GTSAC | 2 cut(s) | 79, 334 |
| NsiI | ATGCAT | 2 cut(s) | 118, 445 |
| PagI | TCATGA | 2 cut(s) | 70, 483 |
| PdmI | GAANNNNTTC | 1 cut(s) | 327 |
| PfeI | GAWTC | 3 cut(s) | 38, 215, 466 |
| PkrI | GCNGC | 4 cut(s) | 148, 151, 170, 307 |
| PleI | GAGTC | 2 cut(s) | 474, 481 |
| PpsI | GAGTC | 2 cut(s) | 474, 481 |
| Psp6I | CCWGG | 2 cut(s) | 94, 447 |
| PspGI | CCWGG | 2 cut(s) | 94, 447 |
| PspN4I | GGNNCC | 1 cut(s) | 330 |
| PvuII | CAGCTG | 1 cut(s) | 287 |
| RseI | CAYNNNNRTG | 1 cut(s) | 75 |
| SaqAI | TTAA | 2 cut(s) | 291, 547 |
| SatI | GCNGC | 4 cut(s) | 147, 150, 169, 306 |
| Sau3AI | GATC | 1 cut(s) | 193 |
| SchI | GAGTC | 2 cut(s) | 474, 481 |
| ScrFI | CCNGG | 2 cut(s) | 96, 449 |
| SetI | ASST | 7 cut(s) | 34, 97, 204, 235, 284, 289, 433 |
| SexAI | ACCWGGT | 1 cut(s) | 94 |
| SfaNI | GCATC | 1 cut(s) | 452 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 75 |
| Sse9I | AATT | 4 cut(s) | 313, 370, 457, 492 |
| SsiI | CCGC | 1 cut(s) | 150 |
| SspMI | CTAG | 1 cut(s) | 320 |
| StyD4I | CCNGG | 2 cut(s) | 94, 447 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaqI | TCGA | 1 cut(s) | 490 |
| TasI | AATT | 4 cut(s) | 313, 370, 457, 492 |
| TauI | GCSGC | 1 cut(s) | 152 |
| TfiI | GAWTC | 3 cut(s) | 38, 215, 466 |
| Tru1I | TTAA | 2 cut(s) | 291, 547 |
| Tru9I | TTAA | 2 cut(s) | 291, 547 |
| TscAI | CASTG | 2 cut(s) | 339, 369 |
| TseFI | GTSAC | 2 cut(s) | 79, 334 |
| TseI | GCWGC | 3 cut(s) | 146, 168, 305 |
| Tsp45I | GTSAC | 2 cut(s) | 79, 334 |
| TspDTI | ATGAA | 1 cut(s) | 59 |
| TspRI | CASTG | 2 cut(s) | 339, 369 |
| XbaI | TCTAGA | 1 cut(s) | 319 |
| XmnI | GAANNNNTTC | 1 cut(s) | 327 |
| XspI | CTAG | 1 cut(s) | 320 |
| Zsp2I | ATGCAT | 2 cut(s) | 118, 445 |