Rroxscaffold_1G00043020

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017638
Physical Location & Seq
Reverse (-)
61330703 .. 61331341
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043020.1

Sequence Viewer

Length: 528 bp
ATGTGCTGGCGGAGATTGGCGGGTCTTGGCTGGTCTGCAGTCACGAAAGGCATTGCCTCTTTGGAAATGTTTTCACTTCCATCCAAGACTGGAAGTCCTCAGTCCATTCCAAACTTAGTCTTTGGGTGCTCAAACGACAACCATGCATGCCAAAACATTCCTTTCAAAGACACTGCAGGCTCCATTTCAGGGGTCTTGGGTTTTAATTTGACTCCATATTCATTTGCAAGTCAAATGGGGAATGTCATTCACGGCCGCTTTTCTTGCTACTTCACTTATAGTGACACTCCAATTAATTGTTTCAGGACGCCGCTTAGGGTTTCCACCATTGGGTCTTTTCTCTTAGACGAGAAGGTACGGGAGGAAGGATCAATGCTCAGTTTTCTTCATCAAGTGCCTTACCGAAAGGTGATAACAGAATTCATCAACTACTACCTTCGTCTTGGCTTTCAGAGAATCAACTCAACTGGAACATTAGAGCTTTGCTATATGGACAAAAGCCCAGCTTTGAACAATATGCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

175

Amino Acids

19.51

Weight (kDa)

8.78

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 14 - 94 8.8e-09 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 10, 20, 256, 311
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 308
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 189, 330
AgsI TTSAA 2 cut(s) 166, 511
AhdI GACNNNNNGTC 1 cut(s) 93
AluBI AGCT 2 cut(s) 481, 506
AluI AGCT 2 cut(s) 481, 506
Alw21I GWGCWC 1 cut(s) 131
AlwI GGATC 1 cut(s) 376
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 419
AseI ATTAAT 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 131
BccI CCATC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BfmI CTRYAG 2 cut(s) 36, 174
BisI GCNGC 2 cut(s) 256, 311
BlsI GCNGC 2 cut(s) 257, 312
BmeRI GACNNNNNGTC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 181
Bpu10I CCTNAGC 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 330
Bse1I ACTGG 2 cut(s) 94, 472
Bse3DI GCAATG 1 cut(s) 51
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 2 cut(s) 189, 330
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 113, 391
BseNI ACTGG 2 cut(s) 94, 472
BseX3I CGGCCG 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 502
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 189, 330
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 368
BspACI CCGC 4 cut(s) 10, 20, 256, 311
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 112, 390
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 2 cut(s) 40, 178
BspPI GGATC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 2 cut(s) 94, 472
BssMI GATC 1 cut(s) 368
BssNI GRCGYC 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 8, 148, 178
BstDEI CTNAG 5 cut(s) 99, 115, 314, 343, 377
BstF5I GGATG 1 cut(s) 80
BstKTI GATC 1 cut(s) 371
BstMBI GATC 1 cut(s) 368
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 150
BstSFI CTRYAG 2 cut(s) 36, 174
BstZI CGGCCG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 80
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 8, 148, 178
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 356
CviAII CATG 2 cut(s) 143, 147
CviJI RGCY 7 cut(s) 30, 180, 255, 447, 481, 501, 506
CviKI_1 RGCY 7 cut(s) 30, 180, 255, 447, 481, 501, 506
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 5 cut(s) 99, 115, 314, 343, 377
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
DriI GACNNNNNGTC 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 253
EagI CGGCCG 1 cut(s) 253
Eam1105I GACNNNNNGTC 1 cut(s) 93
EciI GGCGGA 1 cut(s) 25
EclXI CGGCCG 1 cut(s) 253
Eco52I CGGCCG 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 2 cut(s) 146, 150
FaiI YATR 7 cut(s) 144, 148, 217, 279, 489, 491, 518
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FatI CATG 2 cut(s) 142, 146
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 256, 311
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 256, 311
GluI GCNGC 2 cut(s) 256, 311
GsaI CCCAGC 1 cut(s) 506
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 2 cut(s) 146, 150
HinfI GANTC 2 cut(s) 211, 456
HphI GGTGA 1 cut(s) 421
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 2 cut(s) 43, 304
HpyAV CCTTC 3 cut(s) 346, 359, 446
HpyCH4V TGCA 5 cut(s) 38, 146, 176, 227, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 5 cut(s) 99, 115, 314, 343, 377
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 2 cut(s) 146, 150
Kzo9I GATC 1 cut(s) 368
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 8 cut(s) 16, 75, 162, 174, 289, 453, 506, 516
MaeIII GTNAC 2 cut(s) 40, 281
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 4 cut(s) 205, 291, 295, 419
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 67, 108, 355
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 2 cut(s) 204, 294
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 1 cut(s) 368
NlaIII CATG 2 cut(s) 146, 150
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 40, 281
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 456
PkrI GCNGC 2 cut(s) 257, 312
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 181
PstI CTGCAG 2 cut(s) 40, 178
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SaqAI TTAA 2 cut(s) 204, 294
SatI GCNGC 2 cut(s) 256, 311
Sau3AI GATC 1 cut(s) 368
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 357, 411, 438, 483, 508
SfcI CTRYAG 2 cut(s) 36, 174
SphI GCATGC 1 cut(s) 150
Sse9I AATT 4 cut(s) 205, 291, 295, 419
SsiI CCGC 4 cut(s) 10, 20, 256, 311
TasI AATT 4 cut(s) 205, 291, 295, 419
TauI GCSGC 2 cut(s) 258, 313
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 2 cut(s) 204, 294
Tru9I TTAA 2 cut(s) 204, 294
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 40, 281
Tsp45I GTSAC 2 cut(s) 40, 281
TspDTI ATGAA 3 cut(s) 210, 377, 412
TspRI CASTG 1 cut(s) 178
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.