Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017638

Physical Location & Seq

Genomic Coordinates Reverse (-)

55129317 .. 55130219

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTTGGCACCACCTCTGGAAGTCAACCTGCATTTGACACTAATAGTCTCCCAGCCTTTGGTTCAACGAATACCATAGCCTTTGGTACCTACACCACCCTAGCTTTTGGTCAATGTAGCTCGACTTTTGGTACTACAACAAGTGTTCCTGCATTTGGCCAATCAAGTTCAACCTTTGTTAGCACCCAATTTGGCGCTTCATCTCCTAATTTCGTTGAAACTACTCCAGGGAAAACAACATTTTCATCCCGATTGGAGACCACTGTGGTGAACAGTAATGATCAGCCAATTTCTGTGACATCATCAGAAGATCTTTCTAAAGATCTGGTTACAAAAAGTACAGGGAACACATCAGACCAAATTAAAGGTGTAGTTTCTTTTAGTCCTGAGAGTGACGATGATTCCATGGATAAGAACCATACAGATATTTCAAAAAGGGGTGAAAAATTTGAGGATCAGGTCAAGCTTGCAACTAATGCCGATGGAATTGTAGAAATAAATAAGCAAAATGGGAGTAATATGACAGAGGTTCCTTTCATAGAAGCAGAAACTGAAAGTGATGTTAGTGATGAGAGCAGCTTCAGTTGTTTGAGCAAAAACATGTACAAGCCCCACGAGGCGAATGATGGAAGTTGGATTGACACTATGTTGATAAAAGGCACATGGCAGCTTCCTTGTACTTCTCTTGAAAGACCTCTACTGAACTATAGGCAGGCTTGTCGGCCTATGAAGCTATGGCAATTACCACTCATTCCTCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

254

Amino Acids

27.45

Weight (kDa)

4.55

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44242
rosa_chinensis	RchiOBHm_Chr1g0375541
rosa_multiflora	Rmu_co8136822.1_g000001 Rmu_co8219862.1_g000001 Rmu_sc0003275.1_g000022 Rmu_sc0005416.1_g000026 Rmu_sc0041306.1_g000001 Rmu_sc0041306.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043020 Rroxscaffold_5G00374040
rosa_samantha	Rh5AG257200 Rh5BG259800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
Acc65I	GGTACC	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	8, 86
AccB7I	CCANNNNNTGG	1 cut(s)	59
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	565
AfaI	GTAC	5 cut(s)	88, 133, 340, 605, 679
AfiI	CCNNNNNNNGG	2 cut(s)	59, 155
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	5 cut(s)	66, 171, 218, 432, 689
AjnI	CCWGG	2 cut(s)	226, 757
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	104, 120, 466, 579, 670, 733
AluI	AGCT	6 cut(s)	104, 120, 466, 579, 670, 733
Alw26I	GTCTC	2 cut(s)	53, 251
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	2 cut(s)	157, 722
ApeKI	GCWGC	2 cut(s)	576, 667
ApoI	RAATTY	1 cut(s)	446
Asp718I	GGTACC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	280, 452
BalI	TGGCCA	1 cut(s)	159
BanI	GGYRCC	2 cut(s)	8, 86
BauI	CACGAG	1 cut(s)	614
BbvI	GCAGC	2 cut(s)	588, 679
BccI	CCATC	2 cut(s)	476, 620
BcgI	CGANNNNNNTGC	2 cut(s)	701, 735
BciT130I	CCWGG	2 cut(s)	228, 759
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	53, 251
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	706
BfoI	RGCGCY	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	37
BglII	AGATCT	2 cut(s)	310, 322
BisI	GCNGC	2 cut(s)	577, 668
BlsI	GCNGC	2 cut(s)	578, 669
Bme1390I	CCNGG	2 cut(s)	228, 759
BmiI	GGNNCC	3 cut(s)	10, 88, 531
BmrFI	CCNGG	2 cut(s)	228, 759
BpmI	CTGGAG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	227, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 155
BseBI	CCWGG	2 cut(s)	228, 759
BseDI	CCNNGG	2 cut(s)	227, 405
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	59, 155
BseMII	CTCAG	1 cut(s)	378
BseXI	GCAGC	2 cut(s)	588, 679
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	2 cut(s)	159, 724
BshNI	GGYRCC	2 cut(s)	8, 86
BslI	CCNNNNNNNGG	2 cut(s)	59, 155
BsmAI	GTCTC	2 cut(s)	53, 251
BsnI	GGCC	2 cut(s)	159, 724
Bso31I	GGTCTC	1 cut(s)	251
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	4 cut(s)	280, 310, 322, 454
Bsp19I	CCATGG	1 cut(s)	405
BspANI	GGCC	2 cut(s)	159, 724
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	10, 88, 531
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	462
BspT107I	GGYRCC	2 cut(s)	8, 86
BspTNI	GGTCTC	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	603
BssECI	CCNNGG	2 cut(s)	227, 405
BssMI	GATC	4 cut(s)	280, 310, 322, 454
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	2 cut(s)	228, 759
Bst4CI	ACNGT	2 cut(s)	265, 275
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	468, 714
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	4 cut(s)	283, 313, 325, 457
BstMAI	GTCTC	2 cut(s)	53, 251
BstMBI	GATC	4 cut(s)	280, 310, 322, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 730
BstNI	CCWGG	2 cut(s)	228, 759
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	226, 757
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	2 cut(s)	588, 679
BstX2I	RGATCY	2 cut(s)	310, 322
BstYI	RGATCY	2 cut(s)	310, 322
BsuRI	GGCC	2 cut(s)	159, 724
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	468, 714
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	197
Csp6I	GTAC	5 cut(s)	87, 132, 339, 604, 678
CviAII	CATG	3 cut(s)	406, 601, 663
CviQI	GTAC	5 cut(s)	87, 132, 339, 604, 678
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	4 cut(s)	282, 312, 324, 456
DpnII	GATC	4 cut(s)	280, 310, 322, 454
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	565
EcoRII	CCWGG	2 cut(s)	226, 757
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	3 cut(s)	409, 604, 666
FatI	CATG	3 cut(s)	405, 600, 662
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	577, 668
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	577, 668
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	577, 668
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	159, 724
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	409, 604, 666
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	401
HphI	GGTGA	2 cut(s)	280, 452
Hpy166II	GTNNAC	2 cut(s)	26, 271
Hpy188I	TCNGA	2 cut(s)	307, 355
Hpy188III	TCNNGA	4 cut(s)	18, 249, 386, 686
Hpy8I	GTNNAC	2 cut(s)	26, 271
HpyCH4III	ACNGT	2 cut(s)	265, 275
HpyCH4V	TGCA	3 cut(s)	32, 152, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 730
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	409, 604, 666
HspAI	GCGC	1 cut(s)	195
KpnI	GGTACC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	280, 310, 322, 454
Lsp1109I	GCAGC	2 cut(s)	588, 679
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	295, 328, 392
MalI	GATC	4 cut(s)	282, 312, 324, 456
MboI	GATC	4 cut(s)	280, 310, 322, 454
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	2 cut(s)	310, 322
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	7 cut(s)	188, 208, 288, 360, 446, 486, 740
MluNI	TGGCCA	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	6 cut(s)	25, 445, 520, 610, 705, 765
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	228, 759
MvaI	CCWGG	2 cut(s)	228, 759
MwoI	GCNNNNNNNGC	2 cut(s)	476, 730
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	4 cut(s)	280, 310, 322, 454
NlaIII	CATG	3 cut(s)	409, 604, 666
NlaIV	GGNNCC	3 cut(s)	10, 88, 531
NmuCI	GTSAC	2 cut(s)	295, 392
NspI	RCATGY	1 cut(s)	604
OliI	CACNNNNGTG	1 cut(s)	266
PciI	ACATGT	1 cut(s)	600
PfeI	GAWTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	578, 669
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	226, 757
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	226, 757
PspN4I	GGNNCC	3 cut(s)	10, 88, 531
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	310, 322
RsaI	GTAC	5 cut(s)	88, 133, 340, 605, 679
RsaNI	GTAC	5 cut(s)	87, 132, 339, 604, 678
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	577, 668
Sau3AI	GATC	4 cut(s)	280, 310, 322, 454
ScrFI	CCNGG	2 cut(s)	228, 759
SfcI	CTRYAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	7 cut(s)	188, 208, 288, 360, 446, 486, 740
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	226, 757
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	265, 275
TaqI	TCGA	1 cut(s)	122
TasI	AATT	7 cut(s)	188, 208, 288, 360, 446, 486, 740
TatI	WGTACW	3 cut(s)	338, 603, 677
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	295, 392
TseI	GCWGC	2 cut(s)	576, 667
Tsp45I	GTSAC	2 cut(s)	295, 392
TspDTI	ATGAA	4 cut(s)	189, 234, 526, 743
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	446
XceI	RCATGY	1 cut(s)	604
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.