Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017638

Physical Location & Seq

Genomic Coordinates Reverse (-)

62912739 .. 62913396

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAAATTGAAAGTGAGGCCACTAATTTCTGTGATGTTAGTGATGAGAGCGGCTCCAGTAATTTGAGCAATAACGTGTACAAGCCCTACAAGGGGAATGATGTAAGATGGGAAGCTATCCAAGTTGTTCAAGATCATGATGGGATGTTGGGTTTGAATCATTTCAAGTTGTTGAACAGACATCTAATGAATCGTAGACAAGCTTGTGAATCTTCGAATTTGTGGCAATCACTTCCTCTCATTCCTCCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

84

Amino Acids

9.55

Weight (kDa)

5.15

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44242
rosa_chinensis	RchiOBHm_Chr1g0375541
rosa_multiflora	Rmu_co8136822.1_g000001 Rmu_co8219862.1_g000001 Rmu_sc0003275.1_g000022 Rmu_sc0005416.1_g000026 Rmu_sc0041306.1_g000001 Rmu_sc0041306.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043020 Rroxscaffold_5G00374040
rosa_samantha	Rh5AG257200 Rh5BG259800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	92, 93
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	5 cut(s)	11, 131, 157, 166, 175
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	116, 203
AluI	AGCT	2 cut(s)	116, 203
AoxI	GGCC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	215
BccI	CCATC	2 cut(s)	102, 134
BciT130I	CCWGG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 93
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	92, 93
BseNI	ACTGG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	92, 93
BsnI	GGCC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	150
CciI	TCATGA	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	6 cut(s)	20, 54, 85, 116, 203, 252
CviKI_1	RGCY	6 cut(s)	20, 54, 85, 116, 203, 252
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	1 cut(s)	140
FaiI	YATR	1 cut(s)	138
FatI	CATG	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	3 cut(s)	157, 190, 209
Hpy166II	GTNNAC	2 cut(s)	79, 197
Hpy188III	TCNNGA	2 cut(s)	131, 137
Hpy8I	GTNNAC	2 cut(s)	79, 197
HpyCH4IV	ACGT	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	2 cut(s)	70, 234
MaeII	ACGT	1 cut(s)	75
MalI	GATC	1 cut(s)	135
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	204
MluCI	AATT	4 cut(s)	6, 25, 61, 217
MnlI	CCTC	3 cut(s)	10, 246, 255
MroXI	GAANNNNTTC	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	215
PagI	TCATGA	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	157, 190, 209
PkrI	GCNGC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	3 cut(s)	78, 118, 205
SfuI	TTCGAA	1 cut(s)	215
Sse9I	AATT	4 cut(s)	6, 25, 61, 217
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	247
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	215
TasI	AATT	4 cut(s)	6, 25, 61, 217
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	3 cut(s)	157, 190, 209
TspDTI	ATGAA	1 cut(s)	203
XapI	RAATTY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.