Rh5BG259800

MINDY deubiquitinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017638
Physical Location & Seq
Forward (+)
32497606 .. 32511389
13784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG259800.1

Sequence Viewer

Length: 579 bp
ATGGAATCTCATCGTATAAACTCACTTAAAGAAGAAATATTTAAGGTAGTGCACCAAGATAAATATGATTGTGAGCAAATAATTGACTTGAAGAAGATCAATCACAACAATAGAACACAACCGTCCTCGACTTTAGGTACTACAACAAGTGTTCCTGCATTTGGCCAATCAAGTTCAACCTTTGGTAGCACTCAATTTAGCGCTTCATCTCCTATTTTCGTTGAAACTACTCCAGGGAAAACAACATTTTCATCTCGATTGGAGACCACTATGGTGAACAGTAATGATCAGCCAACTTTTGTGACAGCATCAGAAGATCTTTCTAAAGATCTGGTTACAAAATGTACAGGGAACAGATCAGACCAAATTAAAGGTGCAGTTTCTTTTAGTCTTGAGAGTGACAATGATTCCATGGATGTGAACCATATAGATATTTCAAGAAGGGGTGAAAAATTTGAGGATCAGCTTCCTCCGAAACACCCACTTAGCCGTGTATATATAAATGTGCTGGCGGAGAATGTACCTGCAATCGAAGGTACATTGGTGGGTCTGCCGGCACGAAAGGCATTGCCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MINDY_DUB

Protein Analysis

192

Amino Acids

21.13

Weight (kDa)

5.73

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 532
AciI CCGC 1 cut(s) 512
AclWI GGATC 1 cut(s) 468
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 452
AfaI GTAC 4 cut(s) 139, 346, 522, 538
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 4 cut(s) 91, 177, 224, 438
AjnI CCWGG 1 cut(s) 232
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 1 cut(s) 466
AluI AGCT 1 cut(s) 466
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 257
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 1 cut(s) 468
Aor51HI AGCGCT 1 cut(s) 202
AoxI GGCC 1 cut(s) 163
ApaLI GTGCAC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 286, 458
BaeGI GKGCMC 1 cut(s) 54
BaeI ACNNNNGTAYC 2 cut(s) 528, 561
BalI TGGCCA 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 532
BglII AGATCT 2 cut(s) 316, 328
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 233, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 553
Bse3DI GCAATG 1 cut(s) 566
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 233, 411
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 566
BseSI GKGCMC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 554
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 54
Bsp1407I TGTACA 1 cut(s) 344
Bsp143I GATC 6 cut(s) 96, 286, 316, 328, 356, 460
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 1 cut(s) 512
BspANI GGCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 1 cut(s) 468
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 553
BssECI CCNNGG 2 cut(s) 233, 411
BssMI GATC 6 cut(s) 96, 286, 316, 328, 356, 460
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 123, 281
BstAUI TGTACA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 510, 555
BstDEI CTNAG 1 cut(s) 485
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 421
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 6 cut(s) 99, 289, 319, 331, 359, 463
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 6 cut(s) 96, 286, 316, 328, 356, 460
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 316, 328
BstYI RGATCY 2 cut(s) 316, 328
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 421
BveI ACCTGC 1 cut(s) 532
Cac8I GCNNGC 2 cut(s) 510, 555
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 553
Csp6I GTAC 4 cut(s) 138, 345, 521, 537
CviAII CATG 1 cut(s) 412
CviJI RGCY 4 cut(s) 165, 292, 466, 489
CviKI_1 RGCY 4 cut(s) 165, 292, 466, 489
CviQI GTAC 4 cut(s) 138, 345, 521, 537
DdeI CTNAG 1 cut(s) 485
DpnI GATC 6 cut(s) 98, 288, 318, 330, 358, 462
DpnII GATC 6 cut(s) 96, 286, 316, 328, 356, 460
EaeI YGGCCR 1 cut(s) 163
EciI GGCGGA 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 257
Eco47III AGCGCT 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 415
FaiI YATR 9 cut(s) 17, 66, 272, 413, 426, 428, 496, 498, 500
FatI CATG 1 cut(s) 411
FbaI TGATCA 1 cut(s) 286
FokI GGATG 1 cut(s) 428
GlaI GCGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 554
HhaI GCGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 415
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 2 cut(s) 5, 407
HpaII CCGG 1 cut(s) 554
HphI GGTGA 2 cut(s) 286, 458
Hpy166II GTNNAC 3 cut(s) 52, 277, 421
Hpy188I TCNGA 3 cut(s) 313, 361, 474
Hpy188III TCNNGA 3 cut(s) 255, 392, 438
Hpy8I GTNNAC 3 cut(s) 52, 277, 421
HpyAV CCTTC 2 cut(s) 435, 527
HpyCH4III ACNGT 2 cut(s) 123, 281
HpyCH4V TGCA 4 cut(s) 52, 158, 377, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 1 cut(s) 485
Hsp92II CATG 1 cut(s) 415
HspAI GCGC 1 cut(s) 201
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 6 cut(s) 96, 286, 316, 328, 356, 460
LpnPI CCDG 8 cut(s) 168, 219, 246, 317, 333, 494, 537, 567
LweI GCATC 1 cut(s) 317
MaeIII GTNAC 3 cut(s) 301, 334, 398
MalI GATC 6 cut(s) 98, 288, 318, 330, 358, 462
MboI GATC 6 cut(s) 96, 286, 316, 328, 356, 460
MboII GAAGA 4 cut(s) 44, 103, 106, 326
MflI RGATCY 2 cut(s) 316, 328
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 4 cut(s) 81, 194, 366, 452
MluNI TGGCCA 1 cut(s) 165
MnlI CCTC 3 cut(s) 136, 451, 480
Mox20I TGGCCA 1 cut(s) 165
MroNI GCCGGC 1 cut(s) 553
MscI TGGCCA 1 cut(s) 165
MseI TTAA 3 cut(s) 27, 42, 369
MslI CAYNNNNRTG 2 cut(s) 272, 416
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 563
NaeI GCCGGC 1 cut(s) 555
NcoI CCATGG 1 cut(s) 411
NdeII GATC 6 cut(s) 96, 286, 316, 328, 356, 460
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 301, 398
OliI CACNNNNGTG 1 cut(s) 272
PdiI GCCGGC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 5, 407
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 2 cut(s) 316, 328
RsaI GTAC 4 cut(s) 139, 346, 522, 538
RsaNI GTAC 4 cut(s) 138, 345, 521, 537
RseI CAYNNNNRTG 2 cut(s) 272, 416
SaqAI TTAA 3 cut(s) 27, 42, 369
Sau3AI GATC 6 cut(s) 96, 286, 316, 328, 356, 460
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 54
SetI ASST 7 cut(s) 48, 139, 182, 376, 468, 526, 538
SfaNI GCATC 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 272, 416
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 4 cut(s) 81, 194, 366, 452
SsiI CCGC 1 cut(s) 512
SspI AATATT 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 123, 281
TaqI TCGA 3 cut(s) 128, 256, 531
TasI AATT 4 cut(s) 81, 194, 366, 452
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 2 cut(s) 5, 407
Tru1I TTAA 3 cut(s) 27, 42, 369
Tru9I TTAA 3 cut(s) 27, 42, 369
TseFI GTSAC 2 cut(s) 301, 398
Tsp45I GTSAC 2 cut(s) 301, 398
TspDTI ATGAA 2 cut(s) 195, 240
VneI GTGCAC 1 cut(s) 50
XapI RAATTY 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.