Rmu_co8136822.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8136822.1
OG0017638
Physical Location & Seq
Reverse (-)
21 .. 407
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8136822.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atgtcgaaggatgtgaggtgggaagccatccgtcatgttcggacgcagtatggagccctgggcttgagacactttaatcttttgaagaagcttggttgtggagacattggaactgtatatcttgctgagctaatcagtacaaactgccatttcgccataaaggtaatggacaatgagttcctggcaagaaggaagaagatgccaagggctcacacagaaagtgaaatactgagaatgcttgatcatccttttctccctacattgtattcccagtttacatcagataatctttcatgtttagtaatggagtattgtcctggtggagatcttcatgttctccggcagaaacaggtcggaaggtgtttttctgaagcagctacaaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

128

Amino Acids

14.71

Weight (kDa)

9.1

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 139
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 3 cut(s) 57, 180, 316
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 3 cut(s) 91, 130, 377
AluI AGCT 3 cut(s) 91, 130, 377
Alw26I GTCTC 2 cut(s) 61, 96
ApeKI GCWGC 1 cut(s) 374
BanII GRGCYC 2 cut(s) 58, 211
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 59, 182, 318
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 61, 96
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 375
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 3 cut(s) 59, 182, 318
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 59, 182, 318
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 265
Bpu1102I GCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 57, 58, 203
Bse1I ACTGG 1 cut(s) 271
BseBI CCWGG 3 cut(s) 59, 182, 318
BseDI CCNNGG 3 cut(s) 57, 58, 203
BseGI GGATG 3 cut(s) 16, 27, 244
BseMII CTCAG 2 cut(s) 117, 221
BseNI ACTGG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 61, 96
BsmI GAATGC 1 cut(s) 240
Bsp1286I GDGCHC 2 cut(s) 58, 211
Bsp143I GATC 2 cut(s) 241, 325
Bsp1720I GCTNAGC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 118, 222
BspLI GGNNCC 1 cut(s) 55
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 57, 58, 203
BssMI GATC 2 cut(s) 241, 325
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 3 cut(s) 59, 182, 318
Bst4CI ACNGT 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 126, 230
BstF5I GGATG 3 cut(s) 16, 27, 244
BstKTI GATC 2 cut(s) 244, 328
BstMAI GTCTC 2 cut(s) 61, 96
BstMBI GATC 2 cut(s) 241, 325
BstNI CCWGG 3 cut(s) 59, 182, 318
BstSCI CCNGG 3 cut(s) 57, 180, 316
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtsCI GGATG 3 cut(s) 16, 27, 244
CseI GACGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 138
CviAII CATG 3 cut(s) 35, 294, 332
CviJI RGCY 7 cut(s) 26, 56, 63, 91, 130, 209, 377
CviKI_1 RGCY 7 cut(s) 26, 56, 63, 91, 130, 209, 377
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 2 cut(s) 126, 230
DpnI GATC 2 cut(s) 243, 327
DpnII GATC 2 cut(s) 241, 325
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 2 cut(s) 58, 211
EcoRII CCWGG 3 cut(s) 57, 180, 316
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 2 cut(s) 58, 211
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 38, 297, 335
FaiI YATR 6 cut(s) 36, 51, 118, 158, 295, 333
FatI CATG 3 cut(s) 34, 293, 331
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 3 cut(s) 14, 23, 231
FriOI GRGCYC 2 cut(s) 58, 211
Fsp4HI GCNGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 375
HapII CCGG 1 cut(s) 340
HgaI GACGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 38, 297, 335
HindIII AAGCTT 1 cut(s) 89
HpaII CCGG 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 4 cut(s) 42, 283, 356, 370
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 183, 351
HpyCH4III ACNGT 1 cut(s) 115
HpyF3I CTNAG 2 cut(s) 126, 230
Hsp92II CATG 3 cut(s) 38, 297, 335
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 241, 325
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 9 cut(s) 44, 71, 167, 194, 284, 303, 330, 335, 353
LweI GCATC 1 cut(s) 189
MalI GATC 2 cut(s) 243, 327
MboI GATC 2 cut(s) 241, 325
MboII GAAGA 4 cut(s) 97, 205, 208, 320
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 2 cut(s) 58, 211
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 1 cut(s) 9
MseI TTAA 1 cut(s) 75
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 3 cut(s) 59, 182, 318
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 3 cut(s) 59, 182, 318
NdeII GATC 2 cut(s) 241, 325
NlaIII CATG 3 cut(s) 38, 297, 335
NlaIV GGNNCC 1 cut(s) 55
PasI CCCWGGG 1 cut(s) 58
PctI GAATGC 1 cut(s) 240
PkrI GCNGC 1 cut(s) 376
Psp6I CCWGG 3 cut(s) 57, 180, 316
PspGI CCWGG 3 cut(s) 57, 180, 316
PspN4I GGNNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 2 cut(s) 241, 325
ScrFI CCNGG 3 cut(s) 59, 182, 318
SduI GDGCHC 2 cut(s) 58, 211
SetI ASST 8 cut(s) 20, 93, 132, 165, 354, 362, 379, 386
SfaNI GCATC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
StyD4I CCNGG 3 cut(s) 57, 180, 316
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 5
TatI WGTACW 1 cut(s) 137
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 282, 320
TspGWI ACGGA 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.