Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005416.1

Orthogroup ID

OG0017638

Physical Location & Seq

Genomic Coordinates Forward (+)

126180 .. 127406

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005416.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgacacatgctctacacactgctgcatcaaatgttggttccttgcctaatgttaccaatactaatatgattcctggtatacctgcttataaccattacgatacctcatcttgtgcctctaattctcatcattataatgctccatcacctagctctactacactttttgggataccacagaatagcatgttttcaagttcagctcttagtgtgcctaatgctcctccaatttgtcaagacctgctcccattcactaccaatgttgatgttccacagtcaatatctaattctggatatatgctacataatagtattggaaatggaaattacttttcatcatctgcttcctcttatggttatgcacctcaaaatgataattttatggcccaaaatggtggacacatagctcaaaatagtggttatgctcctgctcttcaccacaactattcgcagcagcaagggttctccaatatgtttggcaccacctctggaagtcaacctacatttgacactaatagtctcccagcctttggttcaacgaataccacagcctttggtacctacaccaccccagcttttggtcaatgtagctcgactttaggtactacaacaagtgttcctgcatttggccaatcaagttcaacctttggtagcactcaatttggcgcttcatcttctattttcgttgaaactactccagggaaaacaacattttcatctcgattggagaccactgtggtgaacagtaatgatcagccaacttttgtgacagcatcagaagatctttctaaagatctggttacaaaatgtacagggaacagatcagaccaaattaaaggtgtagtttcttttagtcttgagagtgacaatgattccatggatgtgaaccatatagatatttcaaaaaggggtgaaaaatttgaggatcaggtcaagcttgcaactaatgccaatggaattgtagaaataaataagcaaaatgggagtactatgacagaggttcctttcatagaagtagaaactgaaagtgatgagagcagcttcagttgtttgagcaaaaacatgtacaagctccacgaggcgaatgatggaagttggattgacactctgttgataaaaggcacatggcagcttccttgtacttctcttgaaagacctctactgaactgtaggcaggcttgtcggcctatgaagctatggcaattaccactcattcctcctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

408

Amino Acids

43.71

Weight (kDa)

5.17

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44242
rosa_chinensis	RchiOBHm_Chr1g0375541
rosa_multiflora	Rmu_co8136822.1_g000001 Rmu_co8219862.1_g000001 Rmu_sc0003275.1_g000022 Rmu_sc0005416.1_g000026 Rmu_sc0041306.1_g000001 Rmu_sc0041306.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043020 Rroxscaffold_5G00374040
rosa_samantha	Rh5AG257200 Rh5BG259800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	90, 135
Acc36I	ACCTGC	2 cut(s)	91, 249
Acc65I	GGTACC	1 cut(s)	557
AccB1I	GGYRCC	2 cut(s)	479, 557
AccB7I	CCANNNNNTGG	2 cut(s)	530, 578
AccI	GTMKAC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	933
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	1 cut(s)	1027
AfaI	GTAC	6 cut(s)	559, 604, 811, 988, 1067, 1141
AfiI	CCNNNNNNNGG	3 cut(s)	530, 578, 626
AflIII	ACRYGT	1 cut(s)	1062
AgsI	TTSAA	6 cut(s)	195, 537, 642, 689, 903, 1151
AjnI	CCWGG	3 cut(s)	73, 697, 1219
AleI	CACNNNNGTG	1 cut(s)	737
Alw26I	GTCTC	2 cut(s)	524, 722
AlwI	GGATC	1 cut(s)	933
AoxI	GGCC	3 cut(s)	384, 628, 1184
ApeKI	GCWGC	5 cut(s)	23, 451, 454, 1038, 1129
ApoI	RAATTY	1 cut(s)	917
Asp718I	GGTACC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	4 cut(s)	138, 428, 751, 923
BalI	TGGCCA	1 cut(s)	630
BanI	GGYRCC	2 cut(s)	479, 557
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
BauI	CACGAG	1 cut(s)	1076
BbvI	GCAGC	5 cut(s)	10, 463, 466, 1050, 1141
BccI	CCATC	2 cut(s)	151, 1082
BcgI	CGANNNNNNTGC	2 cut(s)	1163, 1197
BciT130I	CCWGG	3 cut(s)	75, 699, 1221
BciVI	GTATCC	1 cut(s)	165
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	2 cut(s)	524, 722
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	1168
BfoI	RGCGCY	1 cut(s)	669
BfuAI	ACCTGC	2 cut(s)	91, 249
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	2 cut(s)	781, 793
BisI	GCNGC	5 cut(s)	24, 452, 455, 1039, 1130
BlsI	GCNGC	5 cut(s)	25, 453, 456, 1040, 1131
BmcAI	AGTACT	1 cut(s)	988
Bme1390I	CCNGG	3 cut(s)	75, 699, 1221
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	4 cut(s)	40, 481, 559, 1002
BmrFI	CCNGG	3 cut(s)	75, 699, 1221
BmsI	GCATC	2 cut(s)	35, 782
BpmI	CTGGAG	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	878
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	2 cut(s)	698, 876
Bsc4I	CCNNNNNNNGG	3 cut(s)	530, 578, 626
BseBI	CCWGG	3 cut(s)	75, 699, 1221
BseDI	CCNNGG	2 cut(s)	698, 876
BseGI	GGATG	1 cut(s)	886
BseLI	CCNNNNNNNGG	3 cut(s)	530, 578, 626
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	5 cut(s)	10, 463, 466, 1050, 1141
BseYI	CCCAGC	2 cut(s)	523, 571
BshFI	GGCC	3 cut(s)	386, 630, 1186
BshNI	GGYRCC	2 cut(s)	479, 557
BslI	CCNNNNNNNGG	3 cut(s)	530, 578, 626
BsmAI	GTCTC	2 cut(s)	524, 722
BsnI	GGCC	3 cut(s)	386, 630, 1186
Bso31I	GGTCTC	1 cut(s)	722
Bsp1407I	TGTACA	2 cut(s)	809, 1065
Bsp143I	GATC	5 cut(s)	751, 781, 793, 821, 925
Bsp19I	CCATGG	1 cut(s)	876
BspANI	GGCC	3 cut(s)	386, 630, 1186
BspLI	GGNNCC	4 cut(s)	40, 481, 559, 1002
BspMI	ACCTGC	2 cut(s)	91, 249
BspPI	GGATC	1 cut(s)	933
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	2 cut(s)	479, 557
BspTNI	GGTCTC	1 cut(s)	722
BsrGI	TGTACA	2 cut(s)	809, 1065
BssECI	CCNNGG	2 cut(s)	698, 876
BssMI	GATC	5 cut(s)	751, 781, 793, 821, 925
BssNAI	GTATAC	1 cut(s)	80
BssSI	CACGAG	1 cut(s)	1076
BssT1I	CCWWGG	1 cut(s)	876
Bst1107I	GTATAC	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	1076
Bst2UI	CCWGG	3 cut(s)	75, 699, 1221
Bst4CI	ACNGT	4 cut(s)	276, 736, 746, 1169
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstAUI	TGTACA	2 cut(s)	809, 1065
BstC8I	GCNNGC	2 cut(s)	939, 1176
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	876
BstF5I	GGATG	1 cut(s)	886
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	5 cut(s)	754, 784, 796, 824, 928
BstMAI	GTCTC	2 cut(s)	524, 722
BstMBI	GATC	5 cut(s)	751, 781, 793, 821, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	947, 1192
BstNI	CCWGG	3 cut(s)	75, 699, 1221
BstNSI	RCATGY	3 cut(s)	11, 190, 1066
BstSCI	CCNGG	3 cut(s)	73, 697, 1219
BstSFI	CTRYAG	1 cut(s)	1168
BstV1I	GCAGC	5 cut(s)	10, 463, 466, 1050, 1141
BstX2I	RGATCY	2 cut(s)	781, 793
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	2 cut(s)	781, 793
BstZ17I	GTATAC	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	386, 630, 1186
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 732
BveI	ACCTGC	2 cut(s)	91, 249
Cac8I	GCNNGC	2 cut(s)	939, 1176
CfoI	GCGC	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	6 cut(s)	558, 603, 810, 987, 1066, 1140
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	5 cut(s)	8, 187, 877, 1063, 1125
CviQI	GTAC	6 cut(s)	558, 603, 810, 987, 1066, 1140
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	5 cut(s)	753, 783, 795, 823, 927
DpnII	GATC	5 cut(s)	751, 781, 793, 821, 925
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	876
Eco31I	GGTCTC	1 cut(s)	722
Eco57I	CTGAAG	1 cut(s)	1027
EcoRII	CCWGG	3 cut(s)	73, 697, 1219
EcoT14I	CCWWGG	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	5 cut(s)	11, 190, 880, 1066, 1128
FatI	CATG	5 cut(s)	7, 186, 876, 1062, 1124
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	24, 452, 455, 1039, 1130
FokI	GGATG	1 cut(s)	893
Fsp4HI	GCNGC	5 cut(s)	24, 452, 455, 1039, 1130
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	5 cut(s)	24, 452, 455, 1039, 1130
GsaI	CCCAGC	2 cut(s)	527, 575
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	3 cut(s)	386, 630, 1186
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	5 cut(s)	11, 190, 880, 1066, 1128
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	2 cut(s)	70, 872
HphI	GGTGA	4 cut(s)	138, 428, 751, 923
Hpy166II	GTNNAC	5 cut(s)	80, 398, 497, 742, 886
Hpy188I	TCNGA	2 cut(s)	778, 826
Hpy188III	TCNNGA	6 cut(s)	236, 291, 489, 720, 857, 1148
Hpy8I	GTNNAC	5 cut(s)	80, 398, 497, 742, 886
HpyCH4III	ACNGT	4 cut(s)	276, 736, 746, 1169
HpyCH4V	TGCA	4 cut(s)	26, 362, 623, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	947, 1192
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	5 cut(s)	11, 190, 880, 1066, 1128
HspAI	GCGC	1 cut(s)	666
KpnI	GGTACC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	751, 781, 793, 821, 925
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	5 cut(s)	145, 226, 249, 430, 1077
Lsp1109I	GCAGC	5 cut(s)	10, 463, 466, 1050, 1141
LweI	GCATC	2 cut(s)	35, 782
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	52, 766, 799, 863
MalI	GATC	5 cut(s)	753, 783, 795, 823, 927
MboI	GATC	5 cut(s)	751, 781, 793, 821, 925
MboII	GAAGA	3 cut(s)	425, 666, 791
MflI	RGATCY	2 cut(s)	781, 793
MlsI	TGGCCA	1 cut(s)	630
MluNI	TGGCCA	1 cut(s)	630
MmeI	TCCRAC	1 cut(s)	1076
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	1 cut(s)	834
MslI	CAYNNNNRTG	3 cut(s)	135, 737, 881
Msp20I	TGGCCA	1 cut(s)	630
MspR9I	CCNGG	3 cut(s)	75, 699, 1221
MvaI	CCWGG	3 cut(s)	75, 699, 1221
MwoI	GCNNNNNNNGC	2 cut(s)	947, 1192
NcoI	CCATGG	1 cut(s)	876
NdeII	GATC	5 cut(s)	751, 781, 793, 821, 925
NlaIII	CATG	5 cut(s)	11, 190, 880, 1066, 1128
NlaIV	GGNNCC	4 cut(s)	40, 481, 559, 1002
NmuCI	GTSAC	2 cut(s)	766, 863
NspI	RCATGY	3 cut(s)	11, 190, 1066
OliI	CACNNNNGTG	1 cut(s)	737
PciI	ACATGT	1 cut(s)	1062
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	70, 872
PflMI	CCANNNNNTGG	2 cut(s)	530, 578
PkrI	GCNGC	5 cut(s)	25, 453, 456, 1040, 1131
PscI	ACATGT	1 cut(s)	1062
PsiI	TTATAA	2 cut(s)	90, 135
Psp6I	CCWGG	3 cut(s)	73, 697, 1219
PspFI	CCCAGC	2 cut(s)	523, 571
PspGI	CCWGG	3 cut(s)	73, 697, 1219
PspN4I	GGNNCC	4 cut(s)	40, 481, 559, 1002
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	781, 793
RsaI	GTAC	6 cut(s)	559, 604, 811, 988, 1067, 1141
RsaNI	GTAC	6 cut(s)	558, 603, 810, 987, 1066, 1140
RseI	CAYNNNNRTG	3 cut(s)	135, 737, 881
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	5 cut(s)	24, 452, 455, 1039, 1130
Sau3AI	GATC	5 cut(s)	751, 781, 793, 821, 925
Sau96I	GGNCC	1 cut(s)	385
ScaI	AGTACT	1 cut(s)	988
ScrFI	CCNGG	3 cut(s)	75, 699, 1221
SfaNI	GCATC	2 cut(s)	35, 782
SfcI	CTRYAG	1 cut(s)	1168
SmiMI	CAYNNNNRTG	3 cut(s)	135, 737, 881
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	73, 697, 1219
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	4 cut(s)	276, 736, 746, 1169
TaqI	TCGA	2 cut(s)	593, 721
TatI	WGTACW	4 cut(s)	809, 986, 1065, 1139
TfiI	GAWTC	2 cut(s)	70, 872
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	2 cut(s)	25, 739
TseFI	GTSAC	2 cut(s)	766, 863
TseI	GCWGC	5 cut(s)	23, 451, 454, 1038, 1129
Tsp45I	GTSAC	2 cut(s)	766, 863
TspDTI	ATGAA	5 cut(s)	324, 660, 705, 997, 1205
TspRI	CASTG	2 cut(s)	25, 739
Van91I	CCANNNNNTGG	2 cut(s)	530, 578
XapI	RAATTY	1 cut(s)	917
XceI	RCATGY	3 cut(s)	11, 190, 1066
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.