Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009477

Physical Location & Seq

Genomic Coordinates Reverse (-)

37667398 .. 37671952

Gene Structure 4555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45410.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAAGTACTAGTGCTCCTGCTCTGTCTTTGTCAAAACTGGATTTTCCATTTCTGTCATCTCAAAGAAACATGAGGATAGCTCCACTTTCACTCACTTTCAGCAAAGGAAACCTCCATCAATTTCAGATGCCTGGTCGCATTTCTAAGTTTGATGGGTCGAGATCAAATGGGTTTGTGTTATTTTCTTCTGTAAATGGTCAAATCGAAGCCAACAATGCTCCTGAGGTCCAAGTTCAAAGCAGTTTTTGGAACTGGAAGGGTTATTCTATCCGCTATCAACATGCTGGCAACAATGGCCCGGCTTTAGTATTAGTTCATGGTTTTGGAGCAAACAGTGACCATTGGAGAAAAAATATTTCAGTTCTAGCAAGAGCACATAGGGTGTACTCTATTGATCTCATTGGTTATGGGTACTCGGACAAACCAAATCCTCGTCAGTTTGGTGAAAGTCCCTTTTACACATTTGATACATGGGCCACTCAGATAAATGAATTTTGCATTGATGTGGTCAAGGATGAAGCATTCTTCATATGCAACTCTATTGGAGGTCTTGTTGGTCTTCAGGCAGCATTTATGGAGCCACAGATATGCAAGGGTCTAATGCTTATAAATATATCTCTTCGTATGCTTCATATTAAAAAGCAGCCTTGGTTTGGGAGACCATTGATAAAATCATTTCAGAACTTACTGAGAAATACTGCTGTTGGAAAATACTTTTTCAAAACTGTTGCCACACCAGAGTCTGTGAGGAATATCCTTCGCCAGTGCTACCATGATACCTCCCAAGTGACAGATGAACTAGTTGAAAAAATTCTTCTTCCAGGACTTGAACCTGGTGCCGTAGACGTGTTTTTGGAGTTCATTTGTTATTCAGATGGCCCTCTACCTGAGGAACTATTACCTAAAGTCAAGTGTCCTGTTTTGATAGTGTGGGGTGACAAGGATCCATGGGAACCTATTGAGCTTGGACGTGCTTATGGGAATTTTGAATCTGTAGAAGACTTTGTTGTTCTTCCTAATGTTGGCCACTGCCCTCAGGATGAGGCGCCTGATCTTGTAAATCCACTGGTTGAGTCATTTGTGGCACGCCATGCTGCACTCTCATCCAGTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

374

Amino Acids

41.68

Weight (kDa)

6.32

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	101 - 239	1.2e-17	alpha/beta hydrolase fold
Hydrolase_4	PF12146	102 - 236	5.6e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	103 - 212	2.9e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19850
fragaria_vesca	FvH4_3g45410 FvH4_3g45410 FvH4_3g45410 FvH4_3g45410
malus_domestica	MD11G1006800.v1.1 MD11G1007800.v1.1
prunus_persica	Prupe.6G005000_v2.0.a1 Prupe.6G143300_v2.0.a1 Prupe.6G143300_v2.0.a1
pyrus_communis	pycom11g00530
rosa_chinensis	RchiOBHm_Chr5g0083221
rosa_laevigata	RLG00000037020
rosa_multiflora	Rmu_co8146422.1_g000001 Rmu_ssc0000026.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001270
rosa_rugosa	Rorug05G0483500
rosa_samantha	Rh5AG532800 Rh5BG560000 Rh5CG582700 Rh5DG569300
rosa_wichuraiana	Rw5G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AccB1I	GGYRCC	2 cut(s)	839, 1048
AccI	GTMKAC	1 cut(s)	846
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	2 cut(s)	941, 954
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	3 cut(s)	494, 813, 985
AcuI	CTGAAG	1 cut(s)	548
AcyI	GRCGYC	1 cut(s)	1049
AfaI	GTAC	3 cut(s)	10, 389, 416
AfiI	CCNNNNNNNGG	2 cut(s)	656, 1025
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	5 cut(s)	239, 724, 809, 833, 992
AhlI	ACTAGT	2 cut(s)	11, 802
AjiI	CACGTC	2 cut(s)	850, 974
AjnI	CCWGG	3 cut(s)	133, 823, 835
AluBI	AGCT	2 cut(s)	83, 967
AluI	AGCT	2 cut(s)	83, 967
Alw21I	GWGCWC	2 cut(s)	19, 379
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	2 cut(s)	941, 954
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	4 cut(s)	298, 477, 880, 1027
ApeKI	GCWGC	3 cut(s)	569, 646, 1097
ApoI	RAATTY	3 cut(s)	494, 813, 985
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	1051
AspS9I	GGNCC	4 cut(s)	229, 299, 477, 881
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	458, 950
AvaII	GGWCC	1 cut(s)	229
AxyI	CCTNAGG	3 cut(s)	225, 891, 1038
BalI	TGGCCA	1 cut(s)	1029
BamHI	GGATCC	1 cut(s)	946
BanI	GGYRCC	2 cut(s)	839, 1048
BbsI	GAAGAC	2 cut(s)	554, 1008
Bbv12I	GWGCWC	2 cut(s)	19, 379
BbvI	GCAGC	3 cut(s)	581, 658, 1084
BccI	CCATC	3 cut(s)	126, 149, 872
BceAI	ACGGC	1 cut(s)	827
BciT130I	CCWGG	3 cut(s)	135, 825, 837
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	655
BcuI	ACTAGT	2 cut(s)	11, 802
BfaI	CTAG	3 cut(s)	12, 368, 803
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	1 cut(s)	1052
BisI	GCNGC	3 cut(s)	570, 647, 1098
BlsI	GCNGC	3 cut(s)	571, 648, 1099
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	4 cut(s)	135, 302, 825, 837
Bme18I	GGWCC	1 cut(s)	229
BmgBI	CACGTC	2 cut(s)	850, 974
BmgT120I	GGNCC	4 cut(s)	229, 299, 477, 881
BmiI	GGNNCC	5 cut(s)	582, 841, 948, 957, 1050
BmrFI	CCNGG	4 cut(s)	135, 302, 825, 837
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	2 cut(s)	554, 1008
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	1049
BsaI	GGTCTC	1 cut(s)	655
BsaJI	CCNNGG	2 cut(s)	650, 950
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 1025
Bse1I	ACTGG	5 cut(s)	45, 260, 766, 1074, 1110
Bse21I	CCTNAGG	3 cut(s)	225, 891, 1038
BseBI	CCWGG	3 cut(s)	135, 825, 837
BseDI	CCNNGG	2 cut(s)	650, 950
BseGI	GGATG	3 cut(s)	523, 1048, 1106
BseLI	CCNNNNNNNGG	2 cut(s)	656, 1025
BseMII	CTCAG	5 cut(s)	216, 497, 683, 882, 1052
BseNI	ACTGG	5 cut(s)	45, 260, 766, 1074, 1110
BseXI	GCAGC	3 cut(s)	581, 658, 1084
BsgI	GTGCAG	1 cut(s)	1083
BshFI	GGCC	4 cut(s)	300, 479, 882, 1029
BshNI	GGYRCC	2 cut(s)	839, 1048
BsiHKAI	GWGCWC	2 cut(s)	19, 379
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	656, 1025
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	4 cut(s)	300, 479, 882, 1029
Bso31I	GGTCTC	1 cut(s)	655
Bsp1286I	GDGCHC	2 cut(s)	19, 379
Bsp143I	GATC	4 cut(s)	164, 397, 946, 1054
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	4 cut(s)	300, 479, 882, 1029
BspCNI	CTCAG	5 cut(s)	217, 496, 684, 883, 1051
BspLI	GGNNCC	5 cut(s)	582, 841, 948, 957, 1050
BspPI	GGATC	2 cut(s)	941, 954
BspT107I	GGYRCC	2 cut(s)	839, 1048
BspTNI	GGTCTC	1 cut(s)	655
BsrI	ACTGG	5 cut(s)	45, 260, 766, 1074, 1110
BssECI	CCNNGG	2 cut(s)	650, 950
BssMI	GATC	4 cut(s)	164, 397, 946, 1054
BssNI	GRCGYC	1 cut(s)	1049
BssT1I	CCWWGG	2 cut(s)	650, 950
Bst2UI	CCWGG	3 cut(s)	135, 825, 837
Bst4CI	ACNGT	2 cut(s)	338, 730
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	1049
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstC8I	GCNNGC	2 cut(s)	289, 1090
BstDEI	CTNAG	6 cut(s)	147, 225, 483, 692, 891, 1038
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	3 cut(s)	523, 1048, 1106
BstH2I	RGCGCY	1 cut(s)	1052
BstHHI	GCGC	1 cut(s)	1051
BstKTI	GATC	4 cut(s)	167, 400, 949, 1057
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	4 cut(s)	164, 397, 946, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 297, 1094
BstNI	CCWGG	3 cut(s)	135, 825, 837
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	4 cut(s)	133, 300, 823, 835
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	3 cut(s)	581, 658, 1084
BstV2I	GAAGAC	2 cut(s)	554, 1008
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
Bsu36I	CCTNAGG	3 cut(s)	225, 891, 1038
BsuRI	GGCC	4 cut(s)	300, 479, 882, 1029
BtgI	CCRYGG	1 cut(s)	950
BtrI	CACGTC	2 cut(s)	850, 974
BtsCI	GGATG	3 cut(s)	523, 1048, 1106
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	4 cut(s)	343, 773, 1030, 1067
Cac8I	GCNNGC	2 cut(s)	289, 1090
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	1 cut(s)	1051
Cfr13I	GGNCC	4 cut(s)	229, 299, 477, 881
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	3 cut(s)	9, 388, 415
CviAII	CATG	7 cut(s)	73, 284, 320, 474, 776, 951, 1094
CviQI	GTAC	3 cut(s)	9, 388, 415
DdeI	CTNAG	6 cut(s)	147, 225, 483, 692, 891, 1038
DinI	GGCGCC	1 cut(s)	1050
DpnI	GATC	4 cut(s)	166, 399, 948, 1056
DpnII	GATC	4 cut(s)	164, 397, 946, 1054
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	2 cut(s)	650, 950
Eco31I	GGTCTC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	548
Eco81I	CCTNAGG	3 cut(s)	225, 891, 1038
EcoRII	CCWGG	3 cut(s)	133, 823, 835
EcoT14I	CCWWGG	2 cut(s)	650, 950
EgeI	GGCGCC	1 cut(s)	1050
EheI	GGCGCC	1 cut(s)	1050
ErhI	CCWWGG	2 cut(s)	650, 950
FaeI	CATG	7 cut(s)	76, 287, 323, 477, 779, 954, 1097
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	7 cut(s)	72, 283, 319, 473, 775, 950, 1093
FauNDI	CATATG	1 cut(s)	533
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	3 cut(s)	570, 647, 1098
FokI	GGATG	3 cut(s)	530, 1055, 1093
Fsp4HI	GCNGC	3 cut(s)	570, 647, 1098
FspBI	CTAG	3 cut(s)	12, 368, 803
GlaI	GCGC	1 cut(s)	1050
GluI	GCNGC	3 cut(s)	570, 647, 1098
HaeII	RGCGCY	1 cut(s)	1052
HaeIII	GGCC	4 cut(s)	300, 479, 882, 1029
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	1051
Hin1I	GRCGYC	1 cut(s)	1049
Hin1II	CATG	7 cut(s)	76, 287, 323, 477, 779, 954, 1097
Hin6I	GCGC	1 cut(s)	1049
HinP1I	GCGC	1 cut(s)	1049
HinfI	GANTC	3 cut(s)	743, 992, 1076
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	458, 950
Hpy166II	GTNNAC	2 cut(s)	388, 847
Hpy188I	TCNGA	5 cut(s)	129, 421, 486, 684, 877
Hpy188III	TCNNGA	3 cut(s)	162, 224, 1040
Hpy8I	GTNNAC	2 cut(s)	388, 847
HpyAV	CCTTC	2 cut(s)	253, 770
HpyCH4III	ACNGT	2 cut(s)	338, 730
HpyCH4IV	ACGT	2 cut(s)	849, 973
HpyCH4V	TGCA	4 cut(s)	501, 537, 594, 1100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 297, 1094
HpyF3I	CTNAG	6 cut(s)	147, 225, 483, 692, 891, 1038
HpySE526I	ACGT	2 cut(s)	849, 973
Hsp92I	GRCGYC	1 cut(s)	1049
Hsp92II	CATG	7 cut(s)	76, 287, 323, 477, 779, 954, 1097
HspAI	GCGC	1 cut(s)	1049
KasI	GGCGCC	1 cut(s)	1048
Kzo9I	GATC	4 cut(s)	164, 397, 946, 1054
LmnI	GCTCC	5 cut(s)	22, 88, 226, 329, 580
Lsp1109I	GCAGC	3 cut(s)	581, 658, 1084
LweI	GCATC	1 cut(s)	120
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	3 cut(s)	12, 368, 803
MaeII	ACGT	2 cut(s)	849, 973
MaeIII	GTNAC	3 cut(s)	338, 790, 938
MalI	GATC	4 cut(s)	166, 399, 948, 1056
MboI	GATC	4 cut(s)	164, 397, 946, 1054
MboII	GAAGA	8 cut(s)	180, 520, 554, 614, 809, 812, 1007, 1013
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	2 cut(s)	19, 379
MlsI	TGGCCA	1 cut(s)	1029
MluCI	AATT	4 cut(s)	122, 494, 813, 985
MluNI	TGGCCA	1 cut(s)	1029
Mly113I	GGCGCC	1 cut(s)	1049
MlyI	GAGTC	2 cut(s)	752, 1085
MmeI	TCCRAC	1 cut(s)	688
Mox20I	TGGCCA	1 cut(s)	1029
MroXI	GAANNNNTTC	1 cut(s)	813
MscI	TGGCCA	1 cut(s)	1029
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	2 cut(s)	506, 589
Msp20I	TGGCCA	1 cut(s)	1029
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	4 cut(s)	135, 302, 825, 837
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	3 cut(s)	135, 825, 837
MwoI	GCNNNNNNNGC	3 cut(s)	218, 297, 1094
NarI	GGCGCC	1 cut(s)	1049
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	950
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	4 cut(s)	164, 397, 946, 1054
NlaIII	CATG	7 cut(s)	76, 287, 323, 477, 779, 954, 1097
NlaIV	GGNNCC	5 cut(s)	582, 841, 948, 957, 1050
NmuCI	GTSAC	3 cut(s)	338, 790, 938
NspI	RCATGY	1 cut(s)	287
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	1 cut(s)	992
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	3 cut(s)	571, 648, 1099
PleI	GAGTC	2 cut(s)	751, 1084
PluTI	GGCGCC	1 cut(s)	1052
PpsI	GAGTC	2 cut(s)	751, 1084
PsiI	TTATAA	1 cut(s)	611
Psp6I	CCWGG	3 cut(s)	133, 823, 835
PspGI	CCWGG	3 cut(s)	133, 823, 835
PspN4I	GGNNCC	5 cut(s)	582, 841, 948, 957, 1050
PspPI	GGNCC	4 cut(s)	229, 299, 477, 881
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	946
RsaI	GTAC	3 cut(s)	10, 389, 416
RsaNI	GTAC	3 cut(s)	9, 388, 415
RseI	CAYNNNNRTG	2 cut(s)	506, 589
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	3 cut(s)	570, 647, 1098
Sau3AI	GATC	4 cut(s)	164, 397, 946, 1054
Sau96I	GGNCC	4 cut(s)	229, 299, 477, 881
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	2 cut(s)	752, 1085
ScrFI	CCNGG	4 cut(s)	135, 302, 825, 837
SduI	GDGCHC	2 cut(s)	19, 379
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	996
SfoI	GGCGCC	1 cut(s)	1050
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	506, 589
SpeI	ACTAGT	2 cut(s)	11, 802
Sse9I	AATT	4 cut(s)	122, 494, 813, 985
SsiI	CCGC	1 cut(s)	274
SspDI	GGCGCC	1 cut(s)	1048
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	3 cut(s)	12, 368, 803
StyD4I	CCNGG	4 cut(s)	133, 300, 823, 835
StyI	CCWWGG	2 cut(s)	650, 950
TaaI	ACNGT	2 cut(s)	338, 730
TaiI	ACGT	2 cut(s)	852, 976
TaqI	TCGA	2 cut(s)	161, 207
TasI	AATT	4 cut(s)	122, 494, 813, 985
TatI	WGTACW	2 cut(s)	8, 387
TfiI	GAWTC	1 cut(s)	992
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	4 cut(s)	343, 773, 1037, 1074
TseFI	GTSAC	3 cut(s)	338, 790, 938
TseI	GCWGC	3 cut(s)	569, 646, 1097
Tsp45I	GTSAC	3 cut(s)	338, 790, 938
TspDTI	ATGAA	8 cut(s)	308, 507, 520, 534, 623, 813, 853, 1107
TspRI	CASTG	4 cut(s)	343, 773, 1037, 1074
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	3 cut(s)	494, 813, 985
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	3 cut(s)	12, 368, 803
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.