Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009477

Physical Location & Seq

Genomic Coordinates Forward (+)

689344 .. 693219

Gene Structure 3876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1007800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAAGCACCAGCTCTCCCGCCCTGTCCTTGTCAAAACTGGATTTTCCACTATTTTCCTCTCAAAGAAAAATGCAAAATCTCCATCAAGTTAAGATTCCTCGCAGGTTGTCGAAGTTTTCTGGGGCTAAATCAAACGGGTTTATCCTTTTTTCTTCACTGAATGGTCAAACTGGTGAGACCAACCCTCCAAGTGTTGAAGCAACCACTTCAGTAAACAATGTGTCTGACGTCCAAGTTCAAAGCAGTATATGGAACTGGAGGGGTTATTCTATCCGATATCAGCATGCTGGCAACAGTGGCCCGGCATTAGTTTTGATTCATGGTTTTGGAGCAAACAGTGATCATTGGAGGAAAAATCTTCCAGTTCTTTCAAAATCACACAGGGTATACTCTATCGATCTTATTGGTTATGGGTACTCAGACAAACCAAATCCTCGTCAATTCGGGGAAACTTTGTTTTATACATTTGAGACATGGGCCAGCCAGCTAAATGATTTTTGTACTGATGTTGTCAAGGGTGAAGCATTCTTTATATGCAACTCTATCGGAGGACTTGTCGGTCTTCAGGCAGCAGTTATGGAGCCACAGTTATGCAAGGGCATAATGCTTTTGAATATTTCTCTTCGTATGCTGCATATTACAAAGCAGCCTTGGTACGGGAGACCATTGATCAAATCCTTTCAGAACTTGCTGAGAAATACTGCTGTGGGCAAATACTTCTTCAAAACTGTTGCCACACCACAATCTGTCAGGAATATCCTTAGCCAGTGCTACCACGACACCTCCCAAGTGACAGAGGAACTAGTTCAAAAAATCCTTCTTCCAGGACTTGAGCCTGGTGCTGTAGATGTGTTTCTGGAGTTCATTTGTTATTCGGGCGGCCCCCTTCCTGAGGAACTATTGCCTCAATTGAAGTGCCCTGTTTTGATTGGCTGGGGTGACAAGGATCCGTGGGAGCCCATTGAACTCGGACGTGAGTATGGAAAATTTGATTCTGTAGAAGACTTCGTTGTTCTTCCTAATGTTGGCCACTGCCCTCAGGATGAAGCACCTGACCTTGTAAATCCGCTGATCGAGTCCTTTGTGGCACGCCACGCTGCGCTCCCTGCCAGCATTTCCACGACTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

378

Amino Acids

41.83

Weight (kDa)

6.75

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	102 - 352	2.7e-21	alpha/beta hydrolase fold
Hydrolase_4	PF12146	103 - 318	2.8e-07	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	104 - 356	2.1e-20	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19850
fragaria_vesca	FvH4_3g45410 FvH4_3g45410 FvH4_3g45410 FvH4_3g45410
malus_domestica	MD11G1006800.v1.1 MD11G1007800.v1.1
prunus_persica	Prupe.6G005000_v2.0.a1 Prupe.6G143300_v2.0.a1 Prupe.6G143300_v2.0.a1
pyrus_communis	pycom11g00530
rosa_chinensis	RchiOBHm_Chr5g0083221
rosa_laevigata	RLG00000037020
rosa_multiflora	Rmu_co8146422.1_g000001 Rmu_ssc0000026.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001270
rosa_rugosa	Rorug05G0483500
rosa_samantha	Rh5AG532800 Rh5BG560000 Rh5CG582700 Rh5DG569300
rosa_wichuraiana	Rw5G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	561
AatII	GACGTC	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	3 cut(s)	21, 882, 1070
AclWI	GGATC	2 cut(s)	944, 957
AcoI	YGGCCR	1 cut(s)	1030
AcsI	RAATTY	1 cut(s)	989
AcuI	CTGAAG	2 cut(s)	195, 551
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	419, 505, 659
AfiI	CCNNNNNNNGG	3 cut(s)	659, 895, 1028
AgsI	TTSAA	8 cut(s)	200, 242, 375, 616, 727, 812, 916, 968
AhlI	ACTAGT	1 cut(s)	805
AjiI	CACGTC	1 cut(s)	977
AjnI	CCWGG	2 cut(s)	826, 838
AluBI	AGCT	2 cut(s)	15, 490
AluI	AGCT	2 cut(s)	15, 490
Alw26I	GTCTC	3 cut(s)	173, 467, 658
AlwI	GGATC	2 cut(s)	944, 957
AoxI	GGCC	4 cut(s)	301, 480, 883, 1030
ApeKI	GCWGC	4 cut(s)	572, 634, 649, 1100
ApoI	RAATTY	1 cut(s)	989
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	1 cut(s)	1105
AspS9I	GGNCC	3 cut(s)	302, 480, 884
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	3 cut(s)	188, 533, 953
AxyI	CCTNAGG	2 cut(s)	894, 1041
BaeGI	GKGCMC	1 cut(s)	923
BalI	TGGCCA	1 cut(s)	1032
BamHI	GGATCC	1 cut(s)	949
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	2 cut(s)	557, 1011
BbvI	GCAGC	4 cut(s)	584, 621, 661, 1087
BccI	CCATC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	828, 840
BclI	TGATCA	2 cut(s)	343, 672
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	3 cut(s)	173, 467, 658
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	1 cut(s)	806
BfmI	CTRYAG	2 cut(s)	846, 999
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	5 cut(s)	573, 635, 650, 883, 1101
BlsI	GCNGC	5 cut(s)	574, 636, 651, 884, 1102
Bme1390I	CCNGG	3 cut(s)	305, 828, 840
BmgBI	CACGTC	1 cut(s)	977
BmgT120I	GGNCC	3 cut(s)	302, 480, 884
BmiI	GGNNCC	4 cut(s)	585, 886, 951, 960
BmrFI	CCNGG	3 cut(s)	305, 828, 840
BpiI	GAAGAC	2 cut(s)	557, 1011
BpmI	CTGGAG	2 cut(s)	280, 881
Bpu10I	CCTNAGC	1 cut(s)	764
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	173, 658
BsaJI	CCNNGG	2 cut(s)	653, 953
BsaXI	ACNNNNNCTCC	9 cut(s)	31, 172, 202, 543, 573, 575, 605, 770, 800
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 895, 1028
Bse1I	ACTGG	5 cut(s)	45, 178, 263, 365, 769
Bse21I	CCTNAGG	2 cut(s)	894, 1041
BseBI	CCWGG	2 cut(s)	828, 840
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	653, 953
BseGI	GGATG	1 cut(s)	1051
BseLI	CCNNNNNNNGG	3 cut(s)	659, 895, 1028
BseMII	CTCAG	4 cut(s)	435, 686, 885, 1055
BseNI	ACTGG	5 cut(s)	45, 178, 263, 365, 769
BseSI	GKGCMC	1 cut(s)	923
BseXI	GCAGC	4 cut(s)	584, 621, 661, 1087
BseYI	CCCAGC	1 cut(s)	936
BshFI	GGCC	4 cut(s)	303, 482, 885, 1032
BshVI	ATCGAT	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	659, 895, 1028
BsmAI	GTCTC	3 cut(s)	173, 467, 658
BsmI	GAATGC	1 cut(s)	527
BsnI	GGCC	4 cut(s)	303, 482, 885, 1032
Bso31I	GGTCTC	2 cut(s)	173, 658
Bsp1286I	GDGCHC	2 cut(s)	923, 963
Bsp143I	GATC	5 cut(s)	343, 400, 672, 949, 1074
BspACI	CCGC	3 cut(s)	21, 882, 1070
BspANI	GGCC	4 cut(s)	303, 482, 885, 1032
BspCNI	CTCAG	4 cut(s)	434, 687, 886, 1054
BspDI	ATCGAT	1 cut(s)	399
BspLI	GGNNCC	4 cut(s)	585, 886, 951, 960
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	944, 957
BspTNI	GGTCTC	2 cut(s)	173, 658
BsrI	ACTGG	5 cut(s)	45, 178, 263, 365, 769
BssECI	CCNNGG	2 cut(s)	653, 953
BssMI	GATC	5 cut(s)	343, 400, 672, 949, 1074
BssNAI	GTATAC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	653
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	828, 840
Bst4CI	ACNGT	4 cut(s)	299, 341, 591, 733
Bst6I	CTCTTC	1 cut(s)	630
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	7 cut(s)	7, 288, 292, 484, 488, 1093, 1114
BstDEI	CTNAG	5 cut(s)	421, 695, 764, 894, 1041
BstDSI	CCRYGG	1 cut(s)	953
BstENI	CCTNNNNNAGG	1 cut(s)	893
BstF5I	GGATG	1 cut(s)	1051
BstHHI	GCGC	1 cut(s)	1105
BstKTI	GATC	5 cut(s)	346, 403, 675, 952, 1077
BstMAI	GTCTC	3 cut(s)	173, 467, 658
BstMBI	GATC	5 cut(s)	343, 400, 672, 949, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 1097, 1109
BstNI	CCWGG	2 cut(s)	828, 840
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	303, 826, 838
BstSFI	CTRYAG	2 cut(s)	846, 999
BstSLI	GKGCMC	1 cut(s)	923
BstV1I	GCAGC	4 cut(s)	584, 621, 661, 1087
BstV2I	GAAGAC	2 cut(s)	557, 1011
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BstZ17I	GTATAC	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	399
Bsu36I	CCTNAGG	2 cut(s)	894, 1041
BsuRI	GGCC	4 cut(s)	303, 482, 885, 1032
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	953
BtrI	CACGTC	1 cut(s)	977
BtsCI	GGATG	1 cut(s)	1051
BtsI	GCAGTG	1 cut(s)	1033
BtsIMutI	CAGTG	5 cut(s)	158, 304, 346, 776, 1033
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	7 cut(s)	7, 288, 292, 484, 488, 1093, 1114
CfoI	GCGC	1 cut(s)	1105
Cfr13I	GGNCC	3 cut(s)	302, 480, 884
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	3 cut(s)	418, 504, 658
CviAII	CATG	3 cut(s)	287, 323, 477
CviQI	GTAC	3 cut(s)	418, 504, 658
DdeI	CTNAG	5 cut(s)	421, 695, 764, 894, 1041
DpnI	GATC	5 cut(s)	345, 402, 674, 951, 1076
DpnII	GATC	5 cut(s)	343, 400, 672, 949, 1074
DrdI	GACNNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	1030
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	653
Eco24I	GRGCYC	1 cut(s)	963
Eco31I	GGTCTC	2 cut(s)	173, 658
Eco32I	GATATC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	195, 551
Eco81I	CCTNAGG	2 cut(s)	894, 1041
EcoNI	CCTNNNNNAGG	1 cut(s)	893
EcoRII	CCWGG	2 cut(s)	826, 838
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	963
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	3 cut(s)	290, 326, 480
FatI	CATG	3 cut(s)	286, 322, 476
FauI	CCCGC	1 cut(s)	28
FbaI	TGATCA	2 cut(s)	343, 672
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	573, 635, 650, 883, 1101
FokI	GGATG	1 cut(s)	1058
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	5 cut(s)	573, 635, 650, 883, 1101
FspBI	CTAG	1 cut(s)	806
GlaI	GCGC	1 cut(s)	1104
GluI	GCNGC	5 cut(s)	573, 635, 650, 883, 1101
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	2 cut(s)	280, 881
HaeIII	GGCC	4 cut(s)	303, 482, 885, 1032
HapII	CCGG	1 cut(s)	305
HhaI	GCGC	1 cut(s)	1105
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	290, 326, 480
Hin6I	GCGC	1 cut(s)	1103
HinP1I	GCGC	1 cut(s)	1103
HinfI	GANTC	4 cut(s)	97, 319, 995, 1079
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	3 cut(s)	188, 533, 953
Hpy166II	GTNNAC	2 cut(s)	217, 391
Hpy188I	TCNGA	6 cut(s)	229, 278, 424, 551, 687, 974
Hpy188III	TCNNGA	4 cut(s)	754, 860, 893, 1043
Hpy8I	GTNNAC	2 cut(s)	217, 391
HpyAV	CCTTC	2 cut(s)	830, 899
HpyCH4III	ACNGT	4 cut(s)	299, 341, 591, 733
HpyCH4IV	ACGT	2 cut(s)	231, 976
HpyCH4V	TGCA	4 cut(s)	76, 540, 597, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 1097, 1109
HpyF3I	CTNAG	5 cut(s)	421, 695, 764, 894, 1041
HpySE526I	ACGT	2 cut(s)	231, 976
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	290, 326, 480
HspAI	GCGC	1 cut(s)	1103
Ksp22I	TGATCA	2 cut(s)	343, 672
Kzo9I	GATC	5 cut(s)	343, 400, 672, 949, 1074
LmnI	GCTCC	4 cut(s)	332, 583, 958, 1110
Lsp1109I	GCAGC	4 cut(s)	584, 621, 661, 1087
MaeI	CTAG	1 cut(s)	806
MaeII	ACGT	2 cut(s)	231, 976
MaeIII	GTNAC	2 cut(s)	793, 941
MalI	GATC	5 cut(s)	345, 402, 674, 951, 1076
MboI	GATC	5 cut(s)	343, 400, 672, 949, 1074
MboII	GAAGA	8 cut(s)	147, 353, 557, 617, 715, 815, 1010, 1016
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	2 cut(s)	923, 963
MlsI	TGGCCA	1 cut(s)	1032
MluCI	AATT	3 cut(s)	443, 911, 989
MluNI	TGGCCA	1 cut(s)	1032
MlyI	GAGTC	1 cut(s)	1088
Mox20I	TGGCCA	1 cut(s)	1032
MroXI	GAANNNNTTC	1 cut(s)	807
MscI	TGGCCA	1 cut(s)	1032
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	592
Msp20I	TGGCCA	1 cut(s)	1032
MspA1I	CMGCKG	1 cut(s)	1072
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	3 cut(s)	305, 828, 840
MunI	CAATTG	1 cut(s)	911
Mva1269I	GAATGC	1 cut(s)	527
MvaI	CCWGG	2 cut(s)	828, 840
MwoI	GCNNNNNNNGC	3 cut(s)	300, 1097, 1109
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	5 cut(s)	343, 400, 672, 949, 1074
NlaIII	CATG	3 cut(s)	290, 326, 480
NlaIV	GGNNCC	4 cut(s)	585, 886, 951, 960
NmuCI	GTSAC	2 cut(s)	793, 941
NspI	RCATGY	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	290
PctI	GAATGC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	97, 319, 995
PfoI	TCCNGGA	1 cut(s)	826
PkrI	GCNGC	5 cut(s)	574, 636, 651, 884, 1102
PleI	GAGTC	1 cut(s)	1087
PpsI	GAGTC	1 cut(s)	1087
Psp6I	CCWGG	2 cut(s)	826, 838
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	2 cut(s)	826, 838
PspN4I	GGNNCC	4 cut(s)	585, 886, 951, 960
PspPI	GGNCC	3 cut(s)	302, 480, 884
PsuI	RGATCY	1 cut(s)	949
RsaI	GTAC	3 cut(s)	419, 505, 659
RsaNI	GTAC	3 cut(s)	418, 504, 658
RseI	CAYNNNNRTG	1 cut(s)	592
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	5 cut(s)	573, 635, 650, 883, 1101
Sau3AI	GATC	5 cut(s)	343, 400, 672, 949, 1074
Sau96I	GGNCC	3 cut(s)	302, 480, 884
SchI	GAGTC	1 cut(s)	1088
ScrFI	CCNGG	3 cut(s)	305, 828, 840
SduI	GDGCHC	2 cut(s)	923, 963
SetI	ASST	9 cut(s)	17, 110, 234, 492, 788, 979, 1057, 1062, 1133
SfcI	CTRYAG	2 cut(s)	846, 999
SmiMI	CAYNNNNRTG	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SpeI	ACTAGT	1 cut(s)	805
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	3 cut(s)	443, 911, 989
SsiI	CCGC	3 cut(s)	21, 882, 1070
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	1 cut(s)	806
StyD4I	CCNGG	3 cut(s)	303, 826, 838
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	299, 341, 591, 733
TaiI	ACGT	2 cut(s)	234, 979
TaqI	TCGA	3 cut(s)	113, 399, 1077
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	3 cut(s)	443, 911, 989
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	1 cut(s)	885
TfiI	GAWTC	3 cut(s)	97, 319, 995
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	5 cut(s)	165, 304, 346, 776, 1040
TseFI	GTSAC	2 cut(s)	793, 941
TseI	GCWGC	4 cut(s)	572, 634, 649, 1100
Tsp45I	GTSAC	2 cut(s)	793, 941
TspDTI	ATGAA	3 cut(s)	311, 856, 1062
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	5 cut(s)	165, 304, 346, 776, 1040
XagI	CCTNNNNNAGG	1 cut(s)	893
XapI	RAATTY	1 cut(s)	989
XceI	RCATGY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	1 cut(s)	806
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.