Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000026.1

Orthogroup ID

OG0009477

Physical Location & Seq

Genomic Coordinates Reverse (-)

49151 .. 64689

Gene Structure 15539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000026.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atggcaactactagtgctcctgctctgtctttgtcaaaactggattttccatttgtgtcctctcaaagaagcatgaggatagctccactttcactcactttcagccaaggaaacctccatcaatttcagatgcctggtggcatttctaagtttaagggggcgaaatcaaatgggtttgtcttattttcttccttaaatggtcaaattgaagccaacaatgctcctgaggtccaagttcaaagcagtttttggaactggaagggttattctatccgctatcaacatgctggcaacagtggcccggctttagtattagttcatgggtttggagcaaacagtgaccactggagaaaaaatattccagttctagcaagaagacatagggtgtactctattgatctcattggttatgggtactctgacaaaccaaatcctcgtcaatttggtgaaagtcccttttacacatttgatacatgggccactcagataaatgaattttgtgttgatgttatcaaggatgaagcattcttcatatgcaactctattggaggtcttgttggtcttcaggcagcatttatggagccacagatatgcaagggtctaatgcttataaatatttctcttcgtatgcttcatattaaaaagcagccttggtatgggaaaccattgataaaatcatttcagaacttactgagaaatactgatgttggcaaatactttttcaaaaccgttgcgacaccagagtctgtgaagaatatccttcgccagtgctaccatgatacctcccaagtgacagatgaactagttgaaaaaatccttcttccaggacttgagcctggtgccgtagacgtgtttttggagttcatttgttattcagatggccctctacctgaggaactattacctaaagtgaaatgtcctgttttgatagcatggggtgacaaggatccatgggaacctattgaacttggacgtgcctatgggaattttgaatctgtagaagactttgttgttcttcctaatgttggccactgccctcagtactcatggcctcgctcggctaccgagccgtcgcacctgacctctgaggcttctgcgacaccgacccgtcgagatacacttgccttccgtggctaccaagctgttgcaggtgaccaggagaaggtgttcgtggtcggacatgactgggcagcgtcggaatcgtcgtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

403

Amino Acids

44.95

Weight (kDa)

6.56

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19850
fragaria_vesca	FvH4_3g45410 FvH4_3g45410 FvH4_3g45410 FvH4_3g45410
malus_domestica	MD11G1006800.v1.1 MD11G1007800.v1.1
prunus_persica	Prupe.6G005000_v2.0.a1 Prupe.6G143300_v2.0.a1 Prupe.6G143300_v2.0.a1
pyrus_communis	pycom11g00530
rosa_chinensis	RchiOBHm_Chr5g0083221
rosa_laevigata	RLG00000037020
rosa_multiflora	Rmu_co8146422.1_g000001 Rmu_ssc0000026.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001270
rosa_rugosa	Rorug05G0483500
rosa_samantha	Rh5AG532800 Rh5BG560000 Rh5CG582700 Rh5DG569300
rosa_wichuraiana	Rw5G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AarI	CACCTGC	1 cut(s)	1139
AasI	GACNNNNNNGTC	1 cut(s)	742
Acc36I	ACCTGC	1 cut(s)	1139
AccB1I	GGYRCC	1 cut(s)	839
AccI	GTMKAC	1 cut(s)	846
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	2 cut(s)	941, 954
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	2 cut(s)	494, 985
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	3 cut(s)	389, 416, 1043
AfiI	CCNNNNNNNGG	3 cut(s)	656, 1025, 1162
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	6 cut(s)	209, 239, 724, 809, 965, 992
AhlI	ACTAGT	2 cut(s)	11, 802
AjiI	CACGTC	2 cut(s)	850, 974
AjnI	CCWGG	4 cut(s)	133, 823, 835, 1155
AloI	GAACNNNNNNTCC	2 cut(s)	1151, 1183
AluBI	AGCT	2 cut(s)	83, 1142
AluI	AGCT	2 cut(s)	83, 1142
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	941, 954
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	5 cut(s)	298, 477, 880, 1027, 1049
ApeKI	GCWGC	3 cut(s)	569, 646, 1190
ApoI	RAATTY	2 cut(s)	494, 985
Asp700I	GAANNNNTTC	1 cut(s)	1166
AspS9I	GGNCC	4 cut(s)	229, 299, 477, 881
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	458, 950, 1163
AvaII	GGWCC	1 cut(s)	229
AxyI	CCTNAGG	2 cut(s)	225, 891
BalI	TGGCCA	1 cut(s)	1029
BamHI	GGATCC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	839
BbsI	GAAGAC	3 cut(s)	382, 554, 1008
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	581, 658, 1202
BccI	CCATC	2 cut(s)	126, 872
BceAI	ACGGC	2 cut(s)	827, 1054
BciT130I	CCWGG	4 cut(s)	135, 825, 837, 1157
BcnI	CCSGG	1 cut(s)	302
BcuI	ACTAGT	2 cut(s)	11, 802
BfaI	CTAG	3 cut(s)	12, 368, 803
BfmI	CTRYAG	1 cut(s)	996
BfuAI	ACCTGC	1 cut(s)	1139
BisI	GCNGC	3 cut(s)	570, 647, 1191
BlsI	GCNGC	3 cut(s)	571, 648, 1192
BmcAI	AGTACT	1 cut(s)	1043
Bme1390I	CCNGG	5 cut(s)	135, 302, 825, 837, 1157
Bme18I	GGWCC	1 cut(s)	229
BmgBI	CACGTC	2 cut(s)	850, 974
BmgT120I	GGNCC	4 cut(s)	229, 299, 477, 881
BmiI	GGNNCC	4 cut(s)	582, 841, 948, 957
BmrFI	CCNGG	5 cut(s)	135, 302, 825, 837, 1157
BmrI	ACTGGG	1 cut(s)	1195
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	1195
BpiI	GAAGAC	3 cut(s)	382, 554, 1008
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpmI	CTGGAG	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	302
BsaJI	CCNNGG	4 cut(s)	106, 650, 950, 1129
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 540, 570, 1151, 1181
Bsc4I	CCNNNNNNNGG	3 cut(s)	656, 1025, 1162
Bse1I	ACTGG	6 cut(s)	45, 260, 350, 362, 766, 1190
Bse21I	CCTNAGG	2 cut(s)	225, 891
BseBI	CCWGG	4 cut(s)	135, 825, 837, 1157
BseDI	CCNNGG	4 cut(s)	106, 650, 950, 1129
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	3 cut(s)	656, 1025, 1162
BseMII	CTCAG	6 cut(s)	216, 497, 683, 882, 1052, 1077
BseNI	ACTGG	6 cut(s)	45, 260, 350, 362, 766, 1190
BseXI	GCAGC	3 cut(s)	581, 658, 1202
BshFI	GGCC	5 cut(s)	300, 479, 882, 1029, 1051
BshNI	GGYRCC	1 cut(s)	839
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	3 cut(s)	656, 1025, 1162
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	5 cut(s)	300, 479, 882, 1029, 1051
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	397, 946
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	5 cut(s)	300, 479, 882, 1029, 1051
BspCNI	CTCAG	6 cut(s)	217, 496, 684, 883, 1051, 1078
BspLI	GGNNCC	4 cut(s)	582, 841, 948, 957
BspMI	ACCTGC	1 cut(s)	1139
BspPI	GGATC	2 cut(s)	941, 954
BspT107I	GGYRCC	1 cut(s)	839
BsrI	ACTGG	6 cut(s)	45, 260, 350, 362, 766, 1190
BssECI	CCNNGG	4 cut(s)	106, 650, 950, 1129
BssMI	GATC	2 cut(s)	397, 946
BssT1I	CCWWGG	3 cut(s)	106, 650, 950
Bst2UI	CCWGG	4 cut(s)	135, 825, 837, 1157
Bst4CI	ACNGT	3 cut(s)	296, 338, 730
Bst6I	CTCTTC	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	7 cut(s)	147, 225, 483, 692, 891, 1038, 1086
BstDSI	CCRYGG	2 cut(s)	950, 1129
BstEII	GGTNACC	1 cut(s)	1151
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	2 cut(s)	400, 949
BstMBI	GATC	2 cut(s)	397, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 297
BstNI	CCWGG	4 cut(s)	135, 825, 837, 1157
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	1151
BstSCI	CCNGG	5 cut(s)	133, 300, 823, 835, 1155
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	3 cut(s)	581, 658, 1202
BstV2I	GAAGAC	3 cut(s)	382, 554, 1008
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
Bsu36I	CCTNAGG	2 cut(s)	225, 891
BsuRI	GGCC	5 cut(s)	300, 479, 882, 1029, 1051
BtgI	CCRYGG	2 cut(s)	950, 1129
BtrI	CACGTC	2 cut(s)	850, 974
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	5 cut(s)	301, 343, 343, 773, 1030
BveI	ACCTGC	1 cut(s)	1139
Cac8I	GCNNGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	746
Cfr13I	GGNCC	4 cut(s)	229, 299, 477, 881
CseI	GACGC	1 cut(s)	1182
Csp6I	GTAC	3 cut(s)	388, 415, 1042
CviAII	CATG	9 cut(s)	73, 284, 320, 474, 776, 933, 951, 1047, 1181
CviQI	GTAC	3 cut(s)	388, 415, 1042
DdeI	CTNAG	7 cut(s)	147, 225, 483, 692, 891, 1038, 1086
DpnI	GATC	2 cut(s)	399, 948
DpnII	GATC	2 cut(s)	397, 946
DrdI	GACNNNNNNGTC	1 cut(s)	742
DseDI	GACNNNNNNGTC	1 cut(s)	742
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	3 cut(s)	106, 650, 950
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	548
Eco81I	CCTNAGG	2 cut(s)	225, 891
Eco91I	GGTNACC	1 cut(s)	1151
EcoO65I	GGTNACC	1 cut(s)	1151
EcoRII	CCWGG	4 cut(s)	133, 823, 835, 1155
EcoT14I	CCWWGG	3 cut(s)	106, 650, 950
ErhI	CCWWGG	3 cut(s)	106, 650, 950
FaeI	CATG	9 cut(s)	76, 287, 323, 477, 779, 936, 954, 1050, 1184
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	9 cut(s)	72, 283, 319, 473, 775, 932, 950, 1046, 1180
FauNDI	CATATG	1 cut(s)	533
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	3 cut(s)	570, 647, 1191
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	3 cut(s)	570, 647, 1191
FspBI	CTAG	3 cut(s)	12, 368, 803
GluI	GCNGC	3 cut(s)	570, 647, 1191
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	5 cut(s)	300, 479, 882, 1029, 1051
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	1182
Hin1II	CATG	9 cut(s)	76, 287, 323, 477, 779, 936, 954, 1050, 1184
HinfI	GANTC	3 cut(s)	743, 992, 1199
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	3 cut(s)	458, 950, 1163
Hpy166II	GTNNAC	2 cut(s)	388, 847
Hpy188I	TCNGA	8 cut(s)	129, 421, 486, 684, 877, 1087, 1178, 1198
Hpy188III	TCNNGA	2 cut(s)	224, 1112
Hpy8I	GTNNAC	2 cut(s)	388, 847
Hpy99I	CGWCG	4 cut(s)	1075, 1113, 1198, 1207
HpyAV	CCTTC	5 cut(s)	253, 770, 827, 1135, 1156
HpyCH4III	ACNGT	3 cut(s)	296, 338, 730
HpyCH4IV	ACGT	2 cut(s)	849, 973
HpyCH4V	TGCA	3 cut(s)	537, 594, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 297
HpyF3I	CTNAG	7 cut(s)	147, 225, 483, 692, 891, 1038, 1086
HpySE526I	ACGT	2 cut(s)	849, 973
Hsp92II	CATG	9 cut(s)	76, 287, 323, 477, 779, 936, 954, 1050, 1184
Kzo9I	GATC	2 cut(s)	397, 946
LmnI	GCTCC	5 cut(s)	22, 88, 226, 329, 580
Lsp1109I	GCAGC	3 cut(s)	581, 658, 1202
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	3 cut(s)	12, 368, 803
MaeII	ACGT	2 cut(s)	849, 973
MaeIII	GTNAC	4 cut(s)	338, 790, 938, 1151
MalI	GATC	2 cut(s)	399, 948
MboI	GATC	2 cut(s)	397, 946
MboII	GAAGA	9 cut(s)	180, 387, 520, 554, 614, 763, 812, 1007, 1013
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	1029
MluCI	AATT	5 cut(s)	122, 204, 440, 494, 985
MluNI	TGGCCA	1 cut(s)	1029
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	2 cut(s)	1156, 1176
Mox20I	TGGCCA	1 cut(s)	1029
MroXI	GAANNNNTTC	1 cut(s)	1166
MscI	TGGCCA	1 cut(s)	1029
MseI	TTAA	3 cut(s)	153, 194, 639
MslI	CAYNNNNRTG	1 cut(s)	589
Msp20I	TGGCCA	1 cut(s)	1029
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	5 cut(s)	135, 302, 825, 837, 1157
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	4 cut(s)	135, 825, 837, 1157
MwoI	GCNNNNNNNGC	2 cut(s)	218, 297
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	950
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	2 cut(s)	397, 946
NlaIII	CATG	9 cut(s)	76, 287, 323, 477, 779, 936, 954, 1050, 1184
NlaIV	GGNNCC	4 cut(s)	582, 841, 948, 957
NmeAIII	GCCGAG	1 cut(s)	1037
NmuCI	GTSAC	4 cut(s)	338, 790, 938, 1151
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	1139
PcsI	WCGNNNNNNNCGW	1 cut(s)	1202
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	1166
PfeI	GAWTC	2 cut(s)	992, 1199
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	3 cut(s)	571, 648, 1192
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
PsiI	TTATAA	1 cut(s)	611
Psp6I	CCWGG	4 cut(s)	133, 823, 835, 1155
PspEI	GGTNACC	1 cut(s)	1151
PspGI	CCWGG	4 cut(s)	133, 823, 835, 1155
PspN4I	GGNNCC	4 cut(s)	582, 841, 948, 957
PspPI	GGNCC	4 cut(s)	229, 299, 477, 881
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	946
RsaI	GTAC	3 cut(s)	389, 416, 1043
RsaNI	GTAC	3 cut(s)	388, 415, 1042
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	3 cut(s)	153, 194, 639
SatI	GCNGC	3 cut(s)	570, 647, 1191
Sau3AI	GATC	2 cut(s)	397, 946
Sau96I	GGNCC	4 cut(s)	229, 299, 477, 881
ScaI	AGTACT	1 cut(s)	1043
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	5 cut(s)	135, 302, 825, 837, 1157
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	996
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SpeI	ACTAGT	2 cut(s)	11, 802
Sse9I	AATT	5 cut(s)	122, 204, 440, 494, 985
SsiI	CCGC	1 cut(s)	274
SspI	AATATT	2 cut(s)	358, 616
SspMI	CTAG	3 cut(s)	12, 368, 803
StyD4I	CCNGG	5 cut(s)	133, 300, 823, 835, 1155
StyI	CCWWGG	3 cut(s)	106, 650, 950
TaaI	ACNGT	3 cut(s)	296, 338, 730
TaiI	ACGT	2 cut(s)	852, 976
TaqI	TCGA	1 cut(s)	1111
TasI	AATT	5 cut(s)	122, 204, 440, 494, 985
TatI	WGTACW	2 cut(s)	387, 1041
TfiI	GAWTC	2 cut(s)	992, 1199
Tru1I	TTAA	3 cut(s)	153, 194, 639
Tru9I	TTAA	3 cut(s)	153, 194, 639
TscAI	CASTG	5 cut(s)	301, 343, 350, 773, 1037
TseFI	GTSAC	4 cut(s)	338, 790, 938, 1151
TseI	GCWGC	3 cut(s)	569, 646, 1190
Tsp45I	GTSAC	4 cut(s)	338, 790, 938, 1151
TspDTI	ATGAA	7 cut(s)	308, 507, 520, 534, 623, 813, 853
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	5 cut(s)	301, 343, 350, 773, 1037
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	494, 985
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	1166
XspI	CTAG	3 cut(s)	12, 368, 803
ZrmI	AGTACT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.