Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009477

Physical Location & Seq

Genomic Coordinates Forward (+)

636073 .. 639608

Gene Structure 3536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1006800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCAAGCACCAGCTCTCCCGCCCTGTCCTTGTCAAAACTGGATTTTCCACTATTTTCCTCTCAAAGAAAAATGCAAAATCTCCATCAAGTTAAGATTCCTCGCAGGTTGTCGAAGTTTTCTGGGGCTAAATCAAACGGGTTTGTCCTTTTTTCTTCACTGAATGGTCAAACTGGTGAGACCAGCCCTCCTAGTGTTGAAGCAACCACTTCAGTAAACAATGTGTCTGACGTCCAAGTTCAAAGCAGTATATGGAACTGGAGGGGTTATTCTATCCGATATCAGCATGCTGGCAACAGTGGCCCGGCATTAGTTTTGATTCATGGTTTTGGAGCAAACAGTGATCATTGGAGGAAAAATCTTCCAGTTCTTTCAAAATCACACAGGGTATACTCTATCGATCTTATTGGTTATGGGTACTCAGACAAACCAAATCCTCGTCAATTCGGGGAAACTTTGTTTTATACATTTGAGACATGGGCCACCCAGCTAAATGATTTTTGTACTGACGTTGTCAAGGGTGAAGCATTCTTTATATGCAACTCTATCGGAGGACTTGTCGGTCTTCAGGCAGCAGTTATGGAGCCACAGTTATGCAAGGGCATAATGCTTTTGAATATTTCTCTTCGTATGCTGCATATTACAAAGCAGCCTTGGTGCGGGAGACCATTGATCAAATCCTTTCAGAACTTGCTGAGGGTTTGGTGCAGTGAATTAGTGGAGCATTCAAACAAAAATACAAACAGAAATACTACATTACTAAGTCTCGACGACTGTCTCACGAAATTCAGCACCGCCGGTACGCCGCCGTGGTTGCTCTTCAGAGCACCAAAACGTCCAGACCCAAAGCCCGCCCCTTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

289

Amino Acids

32.08

Weight (kDa)

9.59

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	102 - 207	5.3e-18	alpha/beta hydrolase fold
Hydrolase_4	PF12146	103 - 244	6.8e-07	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	104 - 203	2.8e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19850
fragaria_vesca	FvH4_3g45410 FvH4_3g45410 FvH4_3g45410 FvH4_3g45410
malus_domestica	MD11G1006800.v1.1 MD11G1007800.v1.1
prunus_persica	Prupe.6G005000_v2.0.a1 Prupe.6G143300_v2.0.a1 Prupe.6G143300_v2.0.a1
pyrus_communis	pycom11g00530
rosa_chinensis	RchiOBHm_Chr5g0083221
rosa_laevigata	RLG00000037020
rosa_multiflora	Rmu_co8146422.1_g000001 Rmu_ssc0000026.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001270
rosa_rugosa	Rorug05G0483500
rosa_samantha	Rh5AG532800 Rh5BG560000 Rh5CG582700 Rh5DG569300
rosa_wichuraiana	Rw5G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	561
AatII	GACGTC	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	5 cut(s)	21, 660, 795, 806, 852
AcsI	RAATTY	1 cut(s)	785
AcuI	CTGAAG	3 cut(s)	195, 551, 805
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	419, 505, 802
AfiI	CCNNNNNNNGG	1 cut(s)	659
AgsI	TTSAA	5 cut(s)	200, 242, 375, 616, 729
AluBI	AGCT	2 cut(s)	15, 490
AluI	AGCT	2 cut(s)	15, 490
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	5 cut(s)	173, 467, 658, 770, 782
AoxI	GGCC	2 cut(s)	301, 480
ApeKI	GCWGC	3 cut(s)	572, 634, 649
ApoI	RAATTY	1 cut(s)	785
AspS9I	GGNCC	2 cut(s)	302, 480
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	188, 533
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	829
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	584, 621, 661
BccI	CCATC	1 cut(s)	93
BceAI	ACGGC	1 cut(s)	793
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BclI	TGATCA	2 cut(s)	343, 672
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	5 cut(s)	173, 467, 658, 770, 782
BfaI	CTAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	4 cut(s)	573, 635, 650, 806
BlsI	GCNGC	4 cut(s)	574, 636, 651, 807
Bme1390I	CCNGG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	302, 480
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	305
BoxI	GACNNNNGTC	1 cut(s)	774
BpiI	GAAGAC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	695
BpuMI	CCSGG	1 cut(s)	305
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	173, 658
BsaJI	CCNNGG	2 cut(s)	653, 809
BsaXI	ACNNNNNCTCC	7 cut(s)	31, 172, 202, 543, 573, 575, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse118I	RCCGGY	1 cut(s)	797
Bse1I	ACTGG	4 cut(s)	45, 178, 263, 365
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	653, 809
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	435, 686
BseNI	ACTGG	4 cut(s)	45, 178, 263, 365
BseXI	GCAGC	3 cut(s)	584, 621, 661
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	303, 482
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	829
BsiSI	CCGG	2 cut(s)	305, 798
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	5 cut(s)	173, 467, 658, 770, 782
BsmI	GAATGC	2 cut(s)	527, 724
BsnI	GGCC	2 cut(s)	303, 482
Bso31I	GGTCTC	2 cut(s)	173, 658
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp143I	GATC	3 cut(s)	343, 400, 672
BspACI	CCGC	5 cut(s)	21, 660, 795, 806, 852
BspANI	GGCC	2 cut(s)	303, 482
BspCNI	CTCAG	2 cut(s)	434, 687
BspDI	ATCGAT	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	585
BspMI	ACCTGC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	824
BspTNI	GGTCTC	2 cut(s)	173, 658
BsrFI	RCCGGY	1 cut(s)	797
BsrI	ACTGG	4 cut(s)	45, 178, 263, 365
BssAI	RCCGGY	1 cut(s)	797
BssECI	CCNNGG	2 cut(s)	653, 809
BssMI	GATC	3 cut(s)	343, 400, 672
BssNAI	GTATAC	1 cut(s)	391
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	653
Bst1107I	GTATAC	1 cut(s)	391
Bst4CI	ACNGT	4 cut(s)	299, 341, 591, 776
Bst6I	CTCTTC	2 cut(s)	630, 824
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	7, 288, 292, 852
BstDEI	CTNAG	3 cut(s)	421, 695, 761
BstDSI	CCRYGG	1 cut(s)	809
BstKTI	GATC	3 cut(s)	346, 403, 675
BstMAI	GTCTC	5 cut(s)	173, 467, 658, 770, 782
BstMBI	GATC	3 cut(s)	343, 400, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 814
BstNSI	RCATGY	1 cut(s)	290
BstPAI	GACNNNNGTC	1 cut(s)	774
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	584, 621, 661
BstV2I	GAAGAC	1 cut(s)	557
BstZ17I	GTATAC	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	303, 482
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	809
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	4 cut(s)	158, 304, 346, 715
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	4 cut(s)	7, 288, 292, 852
Cfr10I	RCCGGY	1 cut(s)	797
Cfr13I	GGNCC	2 cut(s)	302, 480
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	3 cut(s)	418, 504, 801
CviAII	CATG	3 cut(s)	287, 323, 477
CviJI	RGCY	9 cut(s)	15, 128, 186, 303, 482, 490, 586, 652, 850
CviKI_1	RGCY	9 cut(s)	15, 128, 186, 303, 482, 490, 586, 652, 850
CviQI	GTAC	3 cut(s)	418, 504, 801
DdeI	CTNAG	3 cut(s)	421, 695, 761
DpnI	GATC	3 cut(s)	345, 402, 674
DpnII	GATC	3 cut(s)	343, 400, 672
DrdI	GACNNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	630, 824
EarI	CTCTTC	2 cut(s)	630, 824
Eco130I	CCWWGG	1 cut(s)	653
Eco31I	GGTCTC	2 cut(s)	173, 658
Eco32I	GATATC	1 cut(s)	281
Eco57I	CTGAAG	3 cut(s)	195, 551, 805
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	3 cut(s)	290, 326, 480
FatI	CATG	3 cut(s)	286, 322, 476
FauI	CCCGC	3 cut(s)	28, 653, 859
FbaI	TGATCA	2 cut(s)	343, 672
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	4 cut(s)	573, 635, 650, 806
Fsp4HI	GCNGC	4 cut(s)	573, 635, 650, 806
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	4 cut(s)	573, 635, 650, 806
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	303, 482
HapII	CCGG	2 cut(s)	305, 798
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	290, 326, 480
HinfI	GANTC	2 cut(s)	97, 319
HpaII	CCGG	2 cut(s)	305, 798
HphI	GGTGA	2 cut(s)	188, 533
Hpy166II	GTNNAC	2 cut(s)	217, 391
Hpy188I	TCNGA	7 cut(s)	229, 278, 424, 551, 687, 824, 866
Hpy188III	TCNNGA	3 cut(s)	767, 781, 839
Hpy8I	GTNNAC	2 cut(s)	217, 391
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	1 cut(s)	867
HpyCH4III	ACNGT	4 cut(s)	299, 341, 591, 776
HpyCH4IV	ACGT	3 cut(s)	231, 510, 835
HpyCH4V	TGCA	5 cut(s)	76, 540, 597, 637, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 814
HpyF3I	CTNAG	3 cut(s)	421, 695, 761
HpySE526I	ACGT	3 cut(s)	231, 510, 835
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	290, 326, 480
Ksp22I	TGATCA	2 cut(s)	343, 672
Kzo9I	GATC	3 cut(s)	343, 400, 672
LguI	GCTCTTC	1 cut(s)	824
LmnI	GCTCC	3 cut(s)	332, 583, 721
Lsp1109I	GCAGC	3 cut(s)	584, 621, 661
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	3 cut(s)	231, 510, 835
MalI	GATC	3 cut(s)	345, 402, 674
MboI	GATC	3 cut(s)	343, 400, 672
MboII	GAAGA	5 cut(s)	147, 353, 557, 617, 811
MhlI	GDGCHC	1 cut(s)	829
MluCI	AATT	3 cut(s)	443, 713, 785
MnlI	CCTC	8 cut(s)	70, 111, 198, 255, 345, 447, 545, 690
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	592
MspI	CCGG	2 cut(s)	305, 798
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	2 cut(s)	527, 724
MwoI	GCNNNNNNNGC	2 cut(s)	300, 814
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	343, 400, 672
NlaIII	CATG	3 cut(s)	290, 326, 480
NlaIV	GGNNCC	1 cut(s)	585
NspI	RCATGY	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	290
PciSI	GCTCTTC	1 cut(s)	824
PctI	GAATGC	2 cut(s)	527, 724
PfeI	GAWTC	2 cut(s)	97, 319
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	574, 636, 651, 807
PshAI	GACNNNNGTC	1 cut(s)	774
PspFI	CCCAGC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	2 cut(s)	302, 480
PsyI	GACNNNGTC	1 cut(s)	512
RsaI	GTAC	3 cut(s)	419, 505, 802
RsaNI	GTAC	3 cut(s)	418, 504, 801
RseI	CAYNNNNRTG	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	824
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	573, 635, 650, 806
Sau3AI	GATC	3 cut(s)	343, 400, 672
Sau96I	GGNCC	2 cut(s)	302, 480
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	829
SetI	ASST	6 cut(s)	17, 110, 234, 492, 513, 838
SmiMI	CAYNNNNRTG	1 cut(s)	592
SphI	GCATGC	1 cut(s)	290
Sse9I	AATT	3 cut(s)	443, 713, 785
SsiI	CCGC	5 cut(s)	21, 660, 795, 806, 852
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	299, 341, 591, 776
TaiI	ACGT	3 cut(s)	234, 513, 838
TaqI	TCGA	3 cut(s)	113, 399, 768
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	3 cut(s)	443, 713, 785
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	1 cut(s)	808
TfiI	GAWTC	2 cut(s)	97, 319
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	4 cut(s)	165, 304, 346, 715
TseI	GCWGC	3 cut(s)	572, 634, 649
TspDTI	ATGAA	1 cut(s)	311
TspRI	CASTG	4 cut(s)	165, 304, 346, 715
Tth111I	GACNNNGTC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.