Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009477

Physical Location & Seq

Genomic Coordinates Reverse (-)

87604383 .. 87607664

Gene Structure 3282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCAAGTACTAGTGCTCCTGCTCTGTCTTTGTCAAAACTGGATTTTCCATTTGTGTCCTCTCAAAGAAGCATGAGGATAGTTCCACTTTCACTCACTTTCAGGCTCAGCAAAGGAAACCTCCATCAATTTCAGATGCCTGGTCGCATTTCTAAGTTTAATAGGGCGAAATCAAATGGGTTTGCCTTATTTTCTTCCTTAAATGGTCAAATTGAAGCCAACAATGCTCCTGAGGTCCAAGTTCAAAGCAGTTTTTGGAACTGGAAGGGTTATTCTATCCGCTATCAACATGCTGGTAACAGTGGCCCGGCTTTAGTATTAGTTCATGGGTTTGGAGCAAACAGTGACCACTGGAGAAAAAATATTCCAGTTCTAGCAAGAGCACATAGGGTTTACTCTATTGATCTCATTGGTTATGGGTACTCTGACAAACCAAATCCTCGACAATTTGGTGAAAGTCCCTTTTACACATTTGATACATGGGCCACTCAGATAAATGAATTTTGTGTTGATGTTATAAAGGATGAAGCATTCTTCATATGCAACTCAATTGGAGGTCTTGTTGGTCTTCAGGCAGCATTTATGGAGCCACAGATATGCAAGGGCCTAATGCTTATAAATATTTCTCTTCGTATGCTTCATATTAAAAAGCAGCCTTGGTATGGGAGACCATTGATAAAATCATTTCAGAACTTACTAAGAAATACTGATGTTGGCAAATACTTTTTCAAAACTGTTGCGACACCAGACTCTGTGAGGAATATCCTTCGCCAGTGCTACCATGATACCTCCCAAGTGACAGATGAACTAGTTGAAAAAATCCTTCTTCCAGGACTTGAGCCTGGTGCTGTAGACGTGTTTTTGGAGTTCATTTGTTATTCAGATGGCCCTCTACCTGAGGAACTATTACCTAAAGTGAAGTGTCCTGTTTTGATAGCATGGGGTGACAAGGATCCATGGGAACCTATTGAACTTGGACGTGCCTATGGGAATTTTGAATCTGTAGAAGACTTTGTTGTTCTTCCTAATGTTGGCCACTGCCCTCAGGATGAAGCACCTGATCTTGTAAATCCACTGGTCGAGTCATTTGTGGCACGCCATGCTGCACTCTCATCCAGTATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

376

Amino Acids

41.98

Weight (kDa)

6.75

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	103 - 353	5.2e-23	alpha/beta hydrolase fold
Hydrolase_4	PF12146	104 - 319	7.4e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	105 - 357	1.3e-20	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19850
fragaria_vesca	FvH4_3g45410 FvH4_3g45410 FvH4_3g45410 FvH4_3g45410
malus_domestica	MD11G1006800.v1.1 MD11G1007800.v1.1
prunus_persica	Prupe.6G005000_v2.0.a1 Prupe.6G143300_v2.0.a1 Prupe.6G143300_v2.0.a1
pyrus_communis	pycom11g00530
rosa_chinensis	RchiOBHm_Chr5g0083221
rosa_laevigata	RLG00000037020
rosa_multiflora	Rmu_co8146422.1_g000001 Rmu_ssc0000026.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001270
rosa_rugosa	Rorug05G0483500
rosa_samantha	Rh5AG532800 Rh5BG560000 Rh5CG582700 Rh5DG569300
rosa_wichuraiana	Rw5G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	518, 617
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	2 cut(s)	947, 960
AcoI	YGGCCR	1 cut(s)	1033
AcsI	RAATTY	2 cut(s)	500, 991
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	2 cut(s)	10, 422
AfiI	CCNNNNNNNGG	2 cut(s)	662, 1031
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	6 cut(s)	215, 245, 730, 815, 971, 998
AhlI	ACTAGT	2 cut(s)	11, 808
AjiI	CACGTC	2 cut(s)	856, 980
AjnI	CCWGG	3 cut(s)	139, 829, 841
Alw21I	GWGCWC	2 cut(s)	19, 385
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	947, 960
AlwNI	CAGNNNCTG	1 cut(s)	752
AoxI	GGCC	5 cut(s)	304, 483, 604, 886, 1033
ApeKI	GCWGC	3 cut(s)	575, 652, 1103
ApoI	RAATTY	2 cut(s)	500, 991
AspS9I	GGNCC	5 cut(s)	235, 305, 483, 604, 887
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	464, 956
AvaII	GGWCC	1 cut(s)	235
AxyI	CCTNAGG	3 cut(s)	231, 897, 1044
BalI	TGGCCA	1 cut(s)	1035
BamHI	GGATCC	1 cut(s)	952
BbsI	GAAGAC	2 cut(s)	560, 1014
Bbv12I	GWGCWC	2 cut(s)	19, 385
BbvI	GCAGC	3 cut(s)	587, 664, 1090
BccI	CCATC	2 cut(s)	132, 878
BciT130I	CCWGG	3 cut(s)	141, 831, 843
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	661
BcuI	ACTAGT	2 cut(s)	11, 808
BfaI	CTAG	3 cut(s)	12, 374, 809
BfmI	CTRYAG	2 cut(s)	849, 1002
BisI	GCNGC	3 cut(s)	576, 653, 1104
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	3 cut(s)	577, 654, 1105
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	4 cut(s)	141, 308, 831, 843
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	2 cut(s)	856, 980
BmgT120I	GGNCC	5 cut(s)	235, 305, 483, 604, 887
BmiI	GGNNCC	3 cut(s)	588, 954, 963
BmrFI	CCNGG	4 cut(s)	141, 308, 831, 843
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	2 cut(s)	560, 1014
BpmI	CTGGAG	1 cut(s)	373
Bpu1102I	GCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	661
BsaJI	CCNNGG	2 cut(s)	656, 956
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 1031
Bse1I	ACTGG	7 cut(s)	45, 266, 356, 368, 772, 1080, 1116
Bse21I	CCTNAGG	3 cut(s)	231, 897, 1044
BseBI	CCWGG	3 cut(s)	141, 831, 843
BseDI	CCNNGG	2 cut(s)	656, 956
BseGI	GGATG	3 cut(s)	529, 1054, 1112
BseLI	CCNNNNNNNGG	2 cut(s)	662, 1031
BseMII	CTCAG	5 cut(s)	121, 222, 503, 888, 1058
BseNI	ACTGG	7 cut(s)	45, 266, 356, 368, 772, 1080, 1116
BseXI	GCAGC	3 cut(s)	587, 664, 1090
BsgI	GTGCAG	1 cut(s)	1089
BshFI	GGCC	5 cut(s)	306, 485, 606, 888, 1035
BsiHKAI	GWGCWC	2 cut(s)	19, 385
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	2 cut(s)	662, 1031
BsmAI	GTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	5 cut(s)	306, 485, 606, 888, 1035
Bso31I	GGTCTC	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	19, 385
Bsp143I	GATC	3 cut(s)	403, 952, 1060
Bsp1720I	GCTNAGC	1 cut(s)	107
Bsp19I	CCATGG	1 cut(s)	956
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	5 cut(s)	306, 485, 606, 888, 1035
BspCNI	CTCAG	5 cut(s)	120, 223, 502, 889, 1057
BspHI	TCATGA	1 cut(s)	1124
BspLI	GGNNCC	3 cut(s)	588, 954, 963
BspPI	GGATC	2 cut(s)	947, 960
BspTNI	GGTCTC	1 cut(s)	661
BsrI	ACTGG	7 cut(s)	45, 266, 356, 368, 772, 1080, 1116
BssECI	CCNNGG	2 cut(s)	656, 956
BssMI	GATC	3 cut(s)	403, 952, 1060
BssT1I	CCWWGG	2 cut(s)	656, 956
Bst2UI	CCWGG	3 cut(s)	141, 831, 843
Bst4CI	ACNGT	3 cut(s)	302, 344, 736
Bst6I	CTCTTC	1 cut(s)	633
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstC8I	GCNNGC	1 cut(s)	1096
BstDEI	CTNAG	7 cut(s)	107, 153, 231, 489, 698, 897, 1044
BstDSI	CCRYGG	1 cut(s)	956
BstF5I	GGATG	3 cut(s)	529, 1054, 1112
BstKTI	GATC	3 cut(s)	406, 955, 1063
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	3 cut(s)	403, 952, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 1100
BstNI	CCWGG	3 cut(s)	141, 831, 843
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	4 cut(s)	139, 306, 829, 841
BstSFI	CTRYAG	2 cut(s)	849, 1002
BstV1I	GCAGC	3 cut(s)	587, 664, 1090
BstV2I	GAAGAC	2 cut(s)	560, 1014
BstX2I	RGATCY	1 cut(s)	952
BstYI	RGATCY	1 cut(s)	952
Bsu36I	CCTNAGG	3 cut(s)	231, 897, 1044
BsuRI	GGCC	5 cut(s)	306, 485, 606, 888, 1035
BtgI	CCRYGG	1 cut(s)	956
BtrI	CACGTC	2 cut(s)	856, 980
BtsCI	GGATG	3 cut(s)	529, 1054, 1112
BtsI	GCAGTG	1 cut(s)	1036
BtsIMutI	CAGTG	6 cut(s)	307, 349, 349, 779, 1036, 1073
Cac8I	GCNNGC	1 cut(s)	1096
CaiI	CAGNNNCTG	1 cut(s)	752
CciI	TCATGA	1 cut(s)	1124
Cfr13I	GGNCC	5 cut(s)	235, 305, 483, 604, 887
Csp6I	GTAC	2 cut(s)	9, 421
CviAII	CATG	9 cut(s)	73, 290, 326, 480, 782, 939, 957, 1100, 1125
CviQI	GTAC	2 cut(s)	9, 421
DdeI	CTNAG	7 cut(s)	107, 153, 231, 489, 698, 897, 1044
DpnI	GATC	3 cut(s)	405, 954, 1062
DpnII	GATC	3 cut(s)	403, 952, 1060
EaeI	YGGCCR	1 cut(s)	1033
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	2 cut(s)	656, 956
Eco31I	GGTCTC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	554
Eco81I	CCTNAGG	3 cut(s)	231, 897, 1044
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	3 cut(s)	139, 829, 841
EcoT14I	CCWWGG	2 cut(s)	656, 956
ErhI	CCWWGG	2 cut(s)	656, 956
FaeI	CATG	9 cut(s)	76, 293, 329, 483, 785, 942, 960, 1103, 1128
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	9 cut(s)	72, 289, 325, 479, 781, 938, 956, 1099, 1124
FauNDI	CATATG	1 cut(s)	539
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	3 cut(s)	576, 653, 1104
FokI	GGATG	3 cut(s)	536, 1061, 1099
Fsp4HI	GCNGC	3 cut(s)	576, 653, 1104
FspBI	CTAG	3 cut(s)	12, 374, 809
GluI	GCNGC	3 cut(s)	576, 653, 1104
GsuI	CTGGAG	1 cut(s)	373
HaeIII	GGCC	5 cut(s)	306, 485, 606, 888, 1035
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	9 cut(s)	76, 293, 329, 483, 785, 942, 960, 1103, 1128
HinfI	GANTC	3 cut(s)	749, 998, 1082
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	2 cut(s)	464, 956
Hpy166II	GTNNAC	2 cut(s)	394, 853
Hpy188I	TCNGA	5 cut(s)	135, 427, 492, 690, 883
Hpy188III	TCNNGA	3 cut(s)	230, 1046, 1125
Hpy8I	GTNNAC	2 cut(s)	394, 853
HpyAV	CCTTC	3 cut(s)	259, 776, 833
HpyCH4III	ACNGT	3 cut(s)	302, 344, 736
HpyCH4IV	ACGT	2 cut(s)	855, 979
HpyCH4V	TGCA	3 cut(s)	543, 600, 1106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 1100
HpyF3I	CTNAG	7 cut(s)	107, 153, 231, 489, 698, 897, 1044
HpySE526I	ACGT	2 cut(s)	855, 979
Hsp92II	CATG	9 cut(s)	76, 293, 329, 483, 785, 942, 960, 1103, 1128
Kzo9I	GATC	3 cut(s)	403, 952, 1060
LmnI	GCTCC	4 cut(s)	22, 232, 335, 586
Lsp1109I	GCAGC	3 cut(s)	587, 664, 1090
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	3 cut(s)	12, 374, 809
MaeII	ACGT	2 cut(s)	855, 979
MaeIII	GTNAC	4 cut(s)	296, 344, 796, 944
MalI	GATC	3 cut(s)	405, 954, 1062
MboI	GATC	3 cut(s)	403, 952, 1060
MboII	GAAGA	7 cut(s)	186, 526, 560, 620, 818, 1013, 1019
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	952
MhlI	GDGCHC	2 cut(s)	19, 385
MlsI	TGGCCA	1 cut(s)	1035
MluCI	AATT	6 cut(s)	128, 210, 446, 500, 549, 991
MluNI	TGGCCA	1 cut(s)	1035
MlyI	GAGTC	2 cut(s)	743, 1091
Mox20I	TGGCCA	1 cut(s)	1035
MscI	TGGCCA	1 cut(s)	1035
MseI	TTAA	3 cut(s)	159, 200, 645
MslI	CAYNNNNRTG	1 cut(s)	595
Msp20I	TGGCCA	1 cut(s)	1035
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	4 cut(s)	141, 308, 831, 843
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	3 cut(s)	141, 831, 843
MwoI	GCNNNNNNNGC	2 cut(s)	224, 1100
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	956
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	3 cut(s)	403, 952, 1060
NlaIII	CATG	9 cut(s)	76, 293, 329, 483, 785, 942, 960, 1103, 1128
NlaIV	GGNNCC	3 cut(s)	588, 954, 963
NmuCI	GTSAC	3 cut(s)	344, 796, 944
NspI	RCATGY	1 cut(s)	293
PagI	TCATGA	1 cut(s)	1124
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	998
PfoI	TCCNGGA	1 cut(s)	829
PkrI	GCNGC	3 cut(s)	577, 654, 1105
PleI	GAGTC	2 cut(s)	743, 1090
PpsI	GAGTC	2 cut(s)	743, 1090
PsiI	TTATAA	2 cut(s)	518, 617
Psp6I	CCWGG	3 cut(s)	139, 829, 841
PspGI	CCWGG	3 cut(s)	139, 829, 841
PspN4I	GGNNCC	3 cut(s)	588, 954, 963
PspPI	GGNCC	5 cut(s)	235, 305, 483, 604, 887
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	952
RsaI	GTAC	2 cut(s)	10, 422
RsaNI	GTAC	2 cut(s)	9, 421
RseI	CAYNNNNRTG	1 cut(s)	595
SaqAI	TTAA	3 cut(s)	159, 200, 645
SatI	GCNGC	3 cut(s)	576, 653, 1104
Sau3AI	GATC	3 cut(s)	403, 952, 1060
Sau96I	GGNCC	5 cut(s)	235, 305, 483, 604, 887
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	2 cut(s)	743, 1091
ScrFI	CCNGG	4 cut(s)	141, 308, 831, 843
SduI	GDGCHC	2 cut(s)	19, 385
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	2 cut(s)	849, 1002
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	595
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SpeI	ACTAGT	2 cut(s)	11, 808
Sse9I	AATT	6 cut(s)	128, 210, 446, 500, 549, 991
SsiI	CCGC	1 cut(s)	280
SspI	AATATT	2 cut(s)	364, 622
SspMI	CTAG	3 cut(s)	12, 374, 809
StyD4I	CCNGG	4 cut(s)	139, 306, 829, 841
StyI	CCWWGG	2 cut(s)	656, 956
TaaI	ACNGT	3 cut(s)	302, 344, 736
TaiI	ACGT	2 cut(s)	858, 982
TaqI	TCGA	2 cut(s)	442, 1080
TasI	AATT	6 cut(s)	128, 210, 446, 500, 549, 991
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	998
Tru1I	TTAA	3 cut(s)	159, 200, 645
Tru9I	TTAA	3 cut(s)	159, 200, 645
TscAI	CASTG	6 cut(s)	307, 349, 356, 779, 1043, 1080
TseFI	GTSAC	3 cut(s)	344, 796, 944
TseI	GCWGC	3 cut(s)	575, 652, 1103
Tsp45I	GTSAC	3 cut(s)	344, 796, 944
TspDTI	ATGAA	9 cut(s)	314, 513, 526, 540, 629, 819, 859, 1065, 1113
TspRI	CASTG	6 cut(s)	307, 349, 356, 779, 1043, 1080
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	500, 991
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	3 cut(s)	12, 374, 809
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.