Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009477

Physical Location & Seq

Genomic Coordinates Reverse (-)

91459334 .. 91461373

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG532800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATTTTGTGTTGATGTTATCAAGGATGAAGCATTCTTCATATGCAACTCTATTGGAGGCAGCATTTATGGAGCCACAGATATGCAAGGGTCTAATGCTTATAAATATTTCTCTTCGTATGCTTCATATTAAAAAGCAGCCTTGGTATGGGAAACCATTGATAAAATCATTTCAGAACTTACTGAGAAATACTGATGTTGGCAAATACTTTTTCAAAACTGTTGCGACACCAGAGTCTGTGAAGAATATCCTTCGCCAGTGCTACCATGATACCTCCCAAGTGACAGATGAACTAGTTGAAAAAATCCTTCTTCCAGGACTTGAGCCTGGTGCCGTAGACGTGTTTTTGGAGTTCATTTGTTATTCAGATGGCCCTCTACCTGAGGAACTATTACCTAAAGTGAAGTGTCCTGTTTTGATAGCATGGGGTGACAAGGATCCATGGGAACCTATTGAACTTGGACGTGCCTATGGGAATTTTGAATCTGTAGAAGACTTTGTTGTTCTTCCTAATGTTGGCCACTGCCCTCAGGATGAAGCACCTGATCTTGTAAATCCACTGGTCGAGTCATTTGTGGCACGCCATGCTGCACTCTCATCCAGTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

204

Amino Acids

22.99

Weight (kDa)

5.38

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19850
fragaria_vesca	FvH4_3g45410 FvH4_3g45410 FvH4_3g45410 FvH4_3g45410
malus_domestica	MD11G1006800.v1.1 MD11G1007800.v1.1
prunus_persica	Prupe.6G005000_v2.0.a1 Prupe.6G143300_v2.0.a1 Prupe.6G143300_v2.0.a1
pyrus_communis	pycom11g00530
rosa_chinensis	RchiOBHm_Chr5g0083221
rosa_laevigata	RLG00000037020
rosa_multiflora	Rmu_co8146422.1_g000001 Rmu_ssc0000026.1_g000009
rosa_roxburghii	Rroxscaffold_1G00001270
rosa_rugosa	Rorug05G0483500
rosa_samantha	Rh5AG532800 Rh5BG560000 Rh5CG582700 Rh5DG569300
rosa_wichuraiana	Rw5G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AasI	GACNNNNNNGTC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	339
AclWI	GGATC	2 cut(s)	434, 447
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	4, 478
AfiI	CCNNNNNNNGG	2 cut(s)	149, 518
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	4 cut(s)	217, 302, 458, 485
AhlI	ACTAGT	1 cut(s)	295
AjiI	CACGTC	2 cut(s)	343, 467
AjnI	CCWGG	2 cut(s)	316, 328
AlwI	GGATC	2 cut(s)	434, 447
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	373, 520
ApeKI	GCWGC	3 cut(s)	62, 139, 590
ApoI	RAATTY	2 cut(s)	4, 478
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	443
AxyI	CCTNAGG	2 cut(s)	384, 531
BalI	TGGCCA	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	74, 151, 577
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	318, 330
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	3 cut(s)	63, 140, 591
BlsI	GCNGC	3 cut(s)	64, 141, 592
Bme1390I	CCNGG	2 cut(s)	318, 330
BmgBI	CACGTC	2 cut(s)	343, 467
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	4 cut(s)	75, 334, 441, 450
BmrFI	CCNGG	2 cut(s)	318, 330
BpiI	GAAGAC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	143, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 518
Bse1I	ACTGG	3 cut(s)	259, 567, 603
Bse21I	CCTNAGG	2 cut(s)	384, 531
BseBI	CCWGG	2 cut(s)	318, 330
BseDI	CCNNGG	2 cut(s)	143, 443
BseGI	GGATG	3 cut(s)	33, 541, 599
BseLI	CCNNNNNNNGG	2 cut(s)	149, 518
BseMII	CTCAG	3 cut(s)	176, 375, 545
BseNI	ACTGG	3 cut(s)	259, 567, 603
BseXI	GCAGC	3 cut(s)	74, 151, 577
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	375, 522
BshNI	GGYRCC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	149, 518
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	375, 522
Bsp143I	GATC	2 cut(s)	439, 547
Bsp19I	CCATGG	1 cut(s)	443
BspANI	GGCC	2 cut(s)	375, 522
BspCNI	CTCAG	3 cut(s)	177, 376, 544
BspLI	GGNNCC	4 cut(s)	75, 334, 441, 450
BspPI	GGATC	2 cut(s)	434, 447
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	259, 567, 603
BssECI	CCNNGG	2 cut(s)	143, 443
BssMI	GATC	2 cut(s)	439, 547
BssT1I	CCWWGG	2 cut(s)	143, 443
Bst2UI	CCWGG	2 cut(s)	318, 330
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	583
BstDEI	CTNAG	3 cut(s)	185, 384, 531
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	33, 541, 599
BstKTI	GATC	2 cut(s)	442, 550
BstMBI	GATC	2 cut(s)	439, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	2 cut(s)	318, 330
BstSCI	CCNGG	2 cut(s)	316, 328
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	3 cut(s)	74, 151, 577
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu36I	CCTNAGG	2 cut(s)	384, 531
BsuRI	GGCC	2 cut(s)	375, 522
BtgI	CCRYGG	1 cut(s)	443
BtrI	CACGTC	2 cut(s)	343, 467
BtsCI	GGATG	3 cut(s)	33, 541, 599
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	266, 523, 560
Cac8I	GCNNGC	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	374
CviAII	CATG	4 cut(s)	269, 426, 444, 587
CviJI	RGCY	5 cut(s)	76, 142, 328, 375, 522
CviKI_1	RGCY	5 cut(s)	76, 142, 328, 375, 522
DdeI	CTNAG	3 cut(s)	185, 384, 531
DpnI	GATC	2 cut(s)	441, 549
DpnII	GATC	2 cut(s)	439, 547
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	143, 443
Eco81I	CCTNAGG	2 cut(s)	384, 531
EcoRII	CCWGG	2 cut(s)	316, 328
EcoT14I	CCWWGG	2 cut(s)	143, 443
ErhI	CCWWGG	2 cut(s)	143, 443
FaeI	CATG	4 cut(s)	272, 429, 447, 590
FatI	CATG	4 cut(s)	268, 425, 443, 586
FauNDI	CATATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	63, 140, 591
FokI	GGATG	3 cut(s)	40, 548, 586
Fsp4HI	GCNGC	3 cut(s)	63, 140, 591
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	3 cut(s)	63, 140, 591
HaeIII	GGCC	2 cut(s)	375, 522
Hin1II	CATG	4 cut(s)	272, 429, 447, 590
HinfI	GANTC	3 cut(s)	236, 485, 569
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	177, 370
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	263, 320
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	342, 466
HpyCH4V	TGCA	3 cut(s)	47, 87, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	3 cut(s)	185, 384, 531
HpySE526I	ACGT	2 cut(s)	342, 466
Hsp92II	CATG	4 cut(s)	272, 429, 447, 590
Kzo9I	GATC	2 cut(s)	439, 547
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	3 cut(s)	74, 151, 577
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	342, 466
MaeIII	GTNAC	2 cut(s)	283, 431
MalI	GATC	2 cut(s)	441, 549
MboI	GATC	2 cut(s)	439, 547
MboII	GAAGA	6 cut(s)	30, 107, 256, 305, 500, 506
MflI	RGATCY	1 cut(s)	439
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	2 cut(s)	4, 478
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	2 cut(s)	245, 578
MnlI	CCTC	5 cut(s)	52, 286, 379, 387, 540
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	82
Msp20I	TGGCCA	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	318, 330
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	318, 330
MwoI	GCNNNNNNNGC	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	443
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	2 cut(s)	439, 547
NlaIII	CATG	4 cut(s)	272, 429, 447, 590
NlaIV	GGNNCC	4 cut(s)	75, 334, 441, 450
NmuCI	GTSAC	2 cut(s)	283, 431
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	485
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	64, 141, 592
PleI	GAGTC	2 cut(s)	244, 577
PpsI	GAGTC	2 cut(s)	244, 577
PsiI	TTATAA	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	316, 328
PspGI	CCWGG	2 cut(s)	316, 328
PspN4I	GGNNCC	4 cut(s)	75, 334, 441, 450
PspPI	GGNCC	1 cut(s)	374
PstNI	CAGNNNCTG	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	63, 140, 591
Sau3AI	GATC	2 cut(s)	439, 547
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	2 cut(s)	245, 578
ScrFI	CCNGG	2 cut(s)	318, 330
SetI	ASST	7 cut(s)	278, 345, 385, 400, 454, 469, 547
SfcI	CTRYAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SpeI	ACTAGT	1 cut(s)	295
Sse9I	AATT	2 cut(s)	4, 478
SspI	AATATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	316, 328
StyI	CCWWGG	2 cut(s)	143, 443
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	2 cut(s)	345, 469
TaqI	TCGA	1 cut(s)	567
TasI	AATT	2 cut(s)	4, 478
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	266, 530, 567
TseFI	GTSAC	2 cut(s)	283, 431
TseI	GCWGC	3 cut(s)	62, 139, 590
Tsp45I	GTSAC	2 cut(s)	283, 431
TspDTI	ATGAA	8 cut(s)	17, 30, 44, 116, 306, 346, 552, 600
TspRI	CASTG	3 cut(s)	266, 530, 567
XapI	RAATTY	2 cut(s)	4, 478
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.